ROLLOUT 7 · reanahub/reana-client
reanahub__reana-client-701
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15tool calls
17model calls
3,857tokens generated
160,455prompt tokens read
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⚠ The request log has 16 model calls but the trace has 18 agent calls, so tokens are listed separately instead of beside each turn.
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System instructions 4,822 characters
You are a principal Python software engineer resolving a repository issue in `/workspace`. Your sole objective is to produce a minimal, root-cause source patch that passes every hidden fail-to-pass and pass-to-pass regression test on the first grading run. ## Critical Environment & Grader Rules 1. **Air-Gapped Sandbox & Available CLI Tools**: No network access. Never run `pip`, `uv`, `conda`, or `git fetch`. Note: `rg` (`ripgrep`) is NOT installed in the container — always use `grep -rn --include="*.py"` for fast exact searches so you never waste a tool call on `command not found`. 2. **Protected Grading Paths**: Before running official verification, the grading harness **strips and reverts all changes** to `tests/`, `test/`, `testing/`, `test_*.py`, `*_test.py`, `conftest.py`, `pyproject.toml`, `setup.cfg`, `pytest.ini`, and `tox.ini`. Every part of your fix MUST reside in non-test production source files. 3. **Untracked File Trap (`git add -N .`)**: `submit_patch` stages ALL untracked files inside `/workspace`! Never leave reproduction or scratch files inside `/workspace` — run reproductions inline via `python3 - <<'PY'` or inside `/tmp/repro.py` in a single `run_command`. 4. **Stdout Truncation Rule**: `run_command` truncates stdout after the first 5,000 characters from the TOP. Always run pytest quietly with short tracebacks: `pytest path/to/test_file.py -k pattern -q --tb=short --no-header` If a test file is large, redirect output to `/tmp/pytest.log` and inspect `tail -n 80 /tmp/pytest.log` so failure tracebacks at the bottom are never cut off. 5. **Strict Pacing Discipline**: `get_status` and `submit_patch` are free and do NOT count toward `max_tool_calls`. Target **16-22 counted tool calls total**, and **begin your first `edit_file` change no later than tool call 15**. Reserve at least 4 calls for verification, `git status --short && git diff`, and submission. ## Execution Protocol ### Phase 1 — Pinpoint Code & Tests Immediately (1-2 tool calls) - The user message already contains `Workspace Layout` — do NOT waste a turn running `ls` on top-level directories. - Run a single compound `run_command` with `grep -rn --include="*.py"` to locate: (a) the exact symbols, error strings, or functions from the problem description, (b) **all parallel or sibling implementations** (for example sync + async variants, `Client` + `AsyncClient`, serializer + deserializer, multiple backends/dialects, base + subclass methods, `__init__.py` / `__all__` exports), and (c) the closest existing unit test files under `tests/`. ### Phase 2 — Deep Read & Spec Anchor (2-5 tool calls) - Use `read_file` with generous `start_line` and `end_line` windows (180-300 lines per call so you read whole modules in fewer calls) on the target function/class, callers, type annotations, and neighboring tests. - Before editing, verify every explicit and implicit requirement from the issue: exact parameter names, defaults, boundary/domain edge cases, exception types/messages, `None` vs empty collection vs falsy (`0`, `False`, `""`) semantics, mutability/copying, and return types. ### Phase 3 — Reproduce Bug in One Call (1 tool call) - Run ONE concise command (`python3 - <<'PY' ... PY` or targeted `pytest ... -q --tb=short --no-header`) via `run_command` to observe the exact pre-fix failure. Do NOT spend multiple tool calls writing separate reproduction scripts. ### Phase 4 — Surgical Implementation Across All Parallel Paths (1-4 tool calls) - Begin editing by tool call 15! Use `edit_file` with 4-6 lines of exact surrounding context copied from `read_file`. - Update ALL parallel codepaths (sync/async, multiple classes/dialects, type hints) consistently so partial fixes do not fail sibling tests. - **2-Strike Edit Rule**: If `edit_file` fails twice on the same block due to whitespace or escaping, do not retry `edit_file` a third time — apply an atomic Python transformation via `run_command` and immediately verify `python3 -m py_compile path/to/file.py`. ### Phase 5 — Edge-Case Verification, Diff Hygiene & Clean Exit (2-4 tool calls) - Run a single compound `run_command` testing both your reproduction + boundary edge cases (`None`, empty input, leading/trailing delimiters, subdomain/prefix boundaries, subclass/async parity) AND the relevant existing `pytest` module(s) with `-q --tb=short --no-header`. - Run `git status --short && git diff` via `run_command`. Confirm: - ZERO untracked (`??`) files in `/workspace` (`rm -f` any untracked workspace files immediately), - ZERO modifications to `tests/` or protected config files (`git checkout -- tests/` if touched), - Minimal, clean diff with valid imports and indentation. - Call `submit_patch` once verification passes, then respond with a brief 2-sentence plain-text summary and make NO further tool calls.
Task prompt 6,896 characters
You are evaluating a software engineering task for repository reanahub/reana-client. Problem Statement: cli: duration of stopped workflows is not displayed correctly Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment. ```console ❯ reana-client status -w recast --include-duration --json | jq '.[0].status' "stopped" ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2598 # After a few seconds... ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2604 ``` This is very likely because in [`reana_client.utils.get_workflow_duration`](https://github.com/reanahub/reana-client/blob/5b278f131b59d3ecfd3c7f129040a126cd01b60a/reana_client/utils.py#L134) we only look at `run_finished_at`, but not at `run_stopped_at`. ## Hints: codecov[bot]: ## [Codecov](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) Report All modified and coverable lines are covered by tests :white_check_mark: > Comparison is base [(`fa5b7c7`)](https://app.codecov.io/gh/reanahub/reana-client/commit/fa5b7c76eb25bfb1591e6fae4a142d975e14b937?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.57% compared to head [(`d3925f2`)](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.62%. <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) ```diff @@ Coverage Diff @@ ## master #701 +/- ## ========================================== + Coverage 58.57% 58.62% +0.05% ========================================== Files 24 24 Lines 2390 2393 +3 ========================================== + Hits 1400 1403 +3 Misses 990 990 ``` | [Files](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) | Coverage Δ | | |---|---|---| | [reana\_client/api/client.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L2FwaS9jbGllbnQucHk=) | `45.54% <100.00%> (ø)` | | | [reana\_client/utils.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3V0aWxzLnB5) | `76.47% <100.00%> (+0.60%)` | :arrow_up: | | [reana\_client/validation/environments.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3ZhbGlkYXRpb24vZW52aXJvbm1lbnRzLnB5) | `32.50% <ø> (ø)` | | </details> giuseppe-steduto: Note for the reviewer: I chose `status` as the scope of the commit because I think that the commands affected by the PR are a nice user-facing scope for changes to the client. For example, this PR fixes `status`, `list`, and in general the commands that use the `--include-duration` flag, I chose `status` as it is the one most evidently impacted. WDYT? mdonadoni: Regarding the scope, I think `fix(status)` can be a good choice. WDYT @tiborsimko ? ## Task Budget (Session terminates when any budget is exhausted) - Time allowance: 7.5 minutes - Tool calls allowance: 30 calls - Max loop iterations: 40 turns ## Execution Environment Rules - Single command timeout: 90 seconds (commands exceeding this fail without ending the session) - Command output limit: 5000 characters - File view limit: 150 lines per read_file call - File character limit: 10000 characters per read_file call - Environment is offline (no network/PyPI access). All repository and test dependencies are ALREADY pre-installed. Do NOT attempt to run pip install or download packages. ## Instructions: 0. All source code is under `/workspace`. Do NOT search outside `/workspace` (e.g. `/usr/`, `/wheels/`, system site-packages). If imports fail, the issue is in the source code under `/workspace`, not in missing system packages. 1. Analyze the problem statement and any provided hints carefully to identify all requested script paths, CLI subcommands, or Python modules. 2. Inspect existing codebase conventions and test files before making edits. 3. Verify your implementation using targeted tests or inline assertions before submitting. 4. Call submit_patch only after your implementation is complete and verified. 5. As your final action, you must return a text-only response reporting your completion to terminate the session. ## Workspace Layout The repository is located at `/workspace`. Here is the directory tree (up to 3 levels): ``` ./AUTHORS.rst ./CHANGELOG.md ./CHANGES.rst ./CONTRIBUTING.rst ./LICENSE ./MANIFEST.in ./README.rst ./docs ./pytest.ini ./reana_client ./reana_client/__init__.py ./reana_client/api ./reana_client/api/__init__.py ./reana_client/api/client.py ./reana_client/api/utils.py ./reana_client/cli ./reana_client/cli/__init__.py ./reana_client/cli/cwl_runner.py ./reana_client/cli/files.py ./reana_client/cli/ping.py ./reana_client/cli/quotas.py ./reana_client/cli/retention_rules.py ./reana_client/cli/secrets.py ./reana_client/cli/utils.py ./reana_client/cli/workflow.py ./reana_client/config.py ./reana_client/errors.py ./reana_client/printer.py ./reana_client/utils.py ./reana_client/validation ./reana_client/validation/__init__.py ./reana_client/validation/compute_backends.py ./reana_client/validation/environments.py ./reana_client/validation/parameters.py ./reana_client/validation/utils.py ./reana_client/validation/workspace.py ./reana_client/version.py ./requirements-dev.txt ./run-tests.sh ./scripts ./scripts/create-appimage.sh ./scripts/generate_cli_api.py ./setup.cfg ./setup.py ./tests ./tox.ini ```
Turn 1at 18 s238 tokens out4,359 prompt tokens
The user is reporting a bug where the duration of stopped workflows is not displayed correctly when running `reana-client status --include-duration`. The duration should be the time between the run start and the run stop, but it's currently calculating the time from the run start until now for stopped workflows. The problem points to `reana_client.utils.get_workflow_duration` as the likely culprit. It says it only looks at `run_finished_at` but not `run_stopped_at`. Plan: 1. Examine `reana_client/utils.py` and the `get_workflow_duration` function. 2. Find where `get_workflow_duration` is used to ensure all calling paths are covered. 3. Create a reproduction test case to verify the bug. 4. Fix the bug by incorporating `run_stopped_at`. 5. Run tests to verify the fix.
TOOL CALL · run_command
{
"command": "grep -rn --include=\"*.py\" \"get_workflow_duration\" ."
}Result of run_command 748 characters
{
"status": "ok",
"stdout": "./reana_client/cli/workflow.py:43: get_workflow_duration,\n./reana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\n./reana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\n./reana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\n./tests/test_utils.py:14:from reana_client.utils import get_workflow_duration\n./tests/test_utils.py:24: assert get_workflow_duration(workflow) is None\n./tests/test_utils.py:34: assert get_workflow_duration(workflow) == 60 + 11\n./tests/test_utils.py:49: assert get_workflow_duration(workflow) == 60 + 11\n",
"stderr": "",
"exit_code": 0
}Turn 2at 27 s120 tokens out4,878 prompt tokens
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` (line 134) and used in `reana_client/cli/workflow.py`. It's also tested in `tests/test_utils.py`. Let's examine `reana_client/utils.py` around line 134.
TOOL CALL · read_file
{
"end_line": 160,
"filepath": "reana_client/utils.py",
"start_line": 120
}Result of read_file 1,674 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": " # `workflow_name` was split, so it is a dot-separated string\n # but it didn't contain a valid `run_number`.\n # Assume that this dot-separated string is the name of\n # the workflow and return just this without a `run_number`.\n return workflow_name, \"\"\n\n return name, run_number\n\n except ValueError:\n # Couldn't split. Probably not a dot-separated string.\n # Return the name given as parameter without a `run_number`.\n return workflow_name, \"\"\n\n\ndef get_workflow_duration(workflow: Dict) -> Optional[int]:\n \"\"\"Calculate the duration of the workflow.\n\n :param workflow: Workflow details returned by the server.\n :return: The duration of the workflow in seconds or ``None`` if the starting\n time is not present.\n \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n",
"start_line": 120,
"end_line": 160,
"total_lines": 277,
"is_truncated": false
}Turn 3at 55 s319 tokens out5,506 prompt tokens
I see the issue.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
When `run_finished_at` is missing, it uses `datetime.utcnow()`. If the workflow was stopped but not finished, it should probably use `run_stopped_at` if it exists.
Let's verify if `run_stopped_at` is available in the `progress` dictionary. The problem statement says "Similarly to what was happening in reanahub/reana-ui#386... we only look at `run_finished_at`, but not at `run_stopped_at`."
Now let's examine the tests in `tests/test_utils.py` to see how it's currently tested.
TOOL CALL · read_file
{
"end_line": 60,
"filepath": "tests/test_utils.py",
"start_line": 1
}Result of read_file 1,574 characters
{
"status": "ok",
"filepath": "tests/test_utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\n\"\"\"REANA client utils tests.\"\"\"\n\nfrom unittest.mock import patch\nfrom datetime import datetime\n\nfrom reana_client.utils import get_workflow_duration\n\n\ndef test_duration_pending_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": None,\n \"run_finished_at\": None,\n }\n }\n assert get_workflow_duration(workflow) is None\n\n\ndef test_duration_finished_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": \"2022-06-16T14:43:22\",\n }\n }\n assert get_workflow_duration(workflow) == 60 + 11\n\n\ndef test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11",
"start_line": 1,
"end_line": 49,
"total_lines": 49,
"is_truncated": false
}Turn 4at 91 s427 tokens out6,380 prompt tokens
I can add a test case for a stopped workflow. If `run_finished_at` is None, and `run_stopped_at` is present, it should use `run_stopped_at`. If both are None, it should use `utcnow()`. Wait, if it's "stopped", is it still "running" in terms of what we want to calculate? The problem says: "when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment." So if `run_stopped_at` is present, it should be used as `end_time`. Let's create a reproduction script.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:00:00\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-07-16T14:05:00\",\n }\n }\n # Current behavior: uses utcnow(), which will be > 2022-07-16T14:05:00\n # Desired behavior: uses run_stopped_at, which should give 5*60 = 300 seconds.\n // Wait, let's just print it.\n print(f\"Duration for stopped workflow: {get_workflow_duration(workflow)}\")\n\ntest_duration_stopped_workflow()\nPY\n"
}Result of run_command 421 characters
{
"status": "error",
"error_type": "CommandError",
"error_message": " File \"<stdin>\", line 14\n // Wait, let's just print it.\n ^\nSyntaxError: unterminated string literal (detected at line 14)\n",
"details": {
"stdout": "",
"stderr": " File \"<stdin>\", line 14\n // Wait, let's just print it.\n ^\nSyntaxError: unterminated string literal (detected at line 14)\n",
"exit_code": 1
}
}Turn 5at 99 s185 tokens out6,954 prompt tokens
My apologies, I used `//` for comments in Python.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:00:00\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-07-16T14:05:00\",\n }\n }\n print(f\"Duration for stopped workflow: {get_workflow_duration(workflow)}\")\n\ntest_duration_stopped_workflow()\nPY\n"
}Result of run_command 437 characters
{
"status": "ok",
"stdout": "Duration for stopped workflow: 136651721\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 6at 129 s318 tokens out7,304 prompt tokens
The duration is indeed very large, which means it's using `datetime.utcnow()` instead of `run_stopped_at`. Now I will apply the fix. I should check if `run_stopped_at` is present in `progress` and use it if `run_finished_at` is not present. Wait, if both `run_finished_at` and `run_stopped_at` are present, which one should take precedence? Usually, if it's finished, it's finished. If it's stopped, it's stopped. If it finished, `run_finished_at` should be used. If it didn't finish but it was stopped, `run_stopped_at` should be used. If it's still running (neither finished nor stopped), `utcnow()` should be used. Revised logic: 1. `end_time = None` 2. if `run_finished_at`: `end_time = fromisoformat(run_finished_at)` 3. else if `run_stopped_at`: `end_time = fromisoformat(run_stopped_at)` 4. else: `end_time = datetime.utcnow()` Let's check `reana_client/utils.py` again.
TOOL CALL · read_file
{
"end_line": 160,
"filepath": "reana_client/utils.py",
"start_line": 120
}Result of read_file 1,674 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": " # `workflow_name` was split, so it is a dot-separated string\n # but it didn't contain a valid `run_number`.\n # Assume that this dot-separated string is the name of\n # the workflow and return just this without a `run_number`.\n return workflow_name, \"\"\n\n return name, run_number\n\n except ValueError:\n # Couldn't split. Probably not a dot-separated string.\n # Return the name given as parameter without a `run_number`.\n return workflow_name, \"\"\n\n\ndef get_workflow_duration(workflow: Dict) -> Optional[int]:\n \"\"\"Calculate the duration of the workflow.\n\n :param workflow: Workflow details returned by the server.\n :return: The duration of the workflow in seconds or ``None`` if the starting\n time is not present.\n \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n",
"start_line": 120,
"end_line": 160,
"total_lines": 277,
"is_truncated": false
}Turn 7at 147 s349 tokens out8,129 prompt tokens
I will now modify `get_workflow_duration` to include `run_stopped_at`.
TOOL CALL · edit_file
{
"filepath": "reana_client/utils.py",
"new_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n run_stopped_at = progress.get(\"run_stopped_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())",
"old_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()"
}Result of edit_file 921 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"occurrences": 1,
"strategy": "exact",
"diff": "--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,14 +146,18 @@\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n+ duration = round((end_time - start_time).total_seconds())\n duration = round((end_time - start_time).total_seconds())\n return duration\n \n",
"is_truncated": false
}Turn 8at 174 s575 tokens out8,800 prompt tokens
Wait, I see a mistake in the `edit_file` result. I duplicated the line `duration = round((end_time - start_time).total_seconds())`.
Actually, looking at the diff:
```diff
@@ -146,14 +146,18 @@
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
+ duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
return duration
```
Yes, I added `duration = round((end_time - start_time).total_seconds())` before the original one.
Let's fix this.
TOOL CALL · edit_file
{
"filepath": "reana_client/utils.py",
"new_string": " if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())",
"old_string": " if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n duration = round((end_time - start_time).total_seconds())"
}Result of edit_file 481 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"occurrences": 1,
"strategy": "exact",
"diff": "--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -157,7 +157,6 @@\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n- duration = round((end_time - start_time).total_seconds())\n duration = round((end_time - start_time).total_seconds())\n return duration\n \n",
"is_truncated": false
}Turn 9at 189 s188 tokens out9,552 prompt tokens
Wait, the diff shows it removed one and kept one.
```diff
- duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
```
Actually, I think I had:
```python
duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
```
And I replaced it with
```python
duration = round((end_time - start_time).total_seconds())
```
So it should be correct now. Let me verify by reading the file.
TOOL CALL · read_file
{
"end_line": 165,
"filepath": "reana_client/utils.py",
"start_line": 140
}Result of read_file 1,062 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": " \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n run_stopped_at = progress.get(\"run_stopped_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n\ndef get_workflow_root():\n \"\"\"Return the current workflow root directory.\"\"\"",
"start_line": 140,
"end_line": 165,
"total_lines": 280,
"is_truncated": false
}Turn 10at 196 s185 tokens out10,101 prompt tokens
Perfect. Now let's re-run the reproduction script.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:00:00\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-07-16T14:05:00\",\n }\n }\n print(f\"Duration for stopped workflow: {get_workflow_duration(workflow)}\")\n\ntest_duration_stopped_workflow()\nPY\n"
}Result of run_command 431 characters
{
"status": "ok",
"stdout": "Duration for stopped workflow: 300\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 11at 211 s170 tokens out10,445 prompt tokens
The reproduction script now outputs `300`, which is correct (5 minutes * 60 seconds). Now I should add a proper test case to `tests/test_utils.py` and run it, as well as make sure no existing tests are broken. I'll use `pytest` to run the tests. Wait, I cannot modify `tests/` for the final submission, but I can add tests to verify my work. However, the grading harness reverts changes to `tests/`. I should verify using a standalone script or by running the existing tests. Let's run existing tests in `tests/test_utils.py`.
TOOL CALL · run_command
{
"command": "pytest tests/test_utils.py -q --tb=short --no-header"
}Result of run_command 2,957 characters
{
"status": "ok",
"stdout": "... [100%]\n\n---------- coverage: platform linux, python 3.10.19-final-0 ----------\nName Stmts Miss Cover Missing\n---------------------------------------------------------------------------\nreana_client/__init__.py 4 0 100%\nreana_client/api/__init__.py 2 2 0% 9-11\nreana_client/api/client.py 415 415 0% 8-1282\nreana_client/api/utils.py 9 9 0% 8-19\nreana_client/cli/__init__.py 47 47 0% 8-97\nreana_client/cli/cwl_runner.py 159 159 0% 8-265\nreana_client/cli/files.py 306 306 0% 8-649\nreana_client/cli/ping.py 60 60 0% 8-130\nreana_client/cli/quotas.py 41 41 0% 8-116\nreana_client/cli/retention_rules.py 28 28 0% 8-73\nreana_client/cli/secrets.py 73 73 0% 8-160\nreana_client/cli/utils.py 183 183 0% 8-408\nreana_client/cli/workflow.py 579 579 0% 8-1459\nreana_client/config.py 35 0 100%\nreana_client/errors.py 4 0 100%\nreana_client/printer.py 17 13 24% 31-62\nreana_client/utils.py 120 78 35% 30-39, 57-78, 84-89, 94-98, 114-131, 157, 166-185, 194, 206-224, 234-251, 256-257, 262-280\nreana_client/validation/__init__.py 1 0 100%\nreana_client/validation/compute_backends.py 14 7 50% 29-39\nreana_client/validation/environments.py 200 167 16% 42-62, 74-77, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 186-221, 225-244, 249-308, 312-373, 380-395, 399, 407-410, 419-429, 434-462, 471-484, 492-503\nreana_client/validation/parameters.py 31 19 39% 26-37, 42-44, 49, 58, 67, 75-79\nreana_client/validation/utils.py 64 48 25% 38-109, 118-131, 136-144, 151-155\nreana_client/validation/workspace.py 15 8 47% 31-45\nreana_client/version.py 3 0 100%\n---------------------------------------------------------------------------\nTOTAL 2410 2242 7%\nCoverage XML written to file coverage.xml\n\n3 passed in 0.29s\n",
"stderr": "/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 12at 230 s226 tokens out11,772 prompt tokens
The existing tests passed. Now let's double check for any other parallel paths. I searched for `get_workflow_duration` and found it used in: - `reana_client/cli/workflow.py` - `reana_client/utils.py` - `tests/test_utils.py` The implementation is in `reana_client/utils.py`. It seems there is only one implementation. One thing to consider: is there any other function that calculates duration? The user mentioned `reana-client status`, `list`, and others that use `--include-duration`. In `reana_client/cli/workflow.py`, we see `get_workflow_duration` being used. Let's check `reana_client/cli/workflow.py` to see if there are any other ways durations are calculated.
TOOL CALL · run_command
{
"command": "grep -rn --include=\"*.py\" \"duration\" reana_client/cli/workflow.py"
}Result of run_command 1,071 characters
{
"status": "ok",
"stdout": "43: get_workflow_duration,\n108: \"progress, duration.\",\n126: \"--include-duration\",\n127: \"include_duration\",\n130: help=\"Include the duration of the workflows in seconds. In case a workflow is in \"\n131: \"progress, its duration as of now will be shown.\",\n172: include_duration: bool,\n225: duration_header = [\"duration\"]\n243: if verbose or include_duration:\n244: headers[type] += duration_header\n251: workflow[\"duration\"] = get_workflow_duration(workflow)\n688: \"--include-duration\",\n689: \"include_duration\",\n692: help=\"Include the duration of the workflow in seconds. In case the workflow is in \"\n693: \"progress, its duration as of now will be shown.\",\n700: ctx, workflow, _format, output_format, include_duration, access_token, verbose\n794: if verbose or include_duration:\n795: headers += [\"duration\"]\n796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\n",
"stderr": "",
"exit_code": 0
}Turn 13at 244 s224 tokens out12,353 prompt tokens
Both usages in `reana_client/cli/workflow.py` use `get_workflow_duration(workflow)`. I'm confident with the fix. Final check: - `run_started_at` missing: returns `None`. - `run_started_at` present, `run_finished_at` present: uses `run_finished_at`. - `run_started_at` present, `run_finished_at` missing, `run_stopped_at` present: uses `run_stopped_at`. - `run_started_at` present, `run_finished_at` missing, `run_stopped_at` missing: uses `utcnow()`. This covers all cases. Let me check if there are any other files where duration is calculated.
TOOL CALL · run_command
{
"command": "grep -rn --include=\"*.py\" \"duration\" reana_client | grep -v \"workflow.py\" | grep -v \"utils.py\""
}Result of run_command 127 characters
{
"status": "error",
"error_type": "CommandError",
"error_message": "",
"details": {
"stdout": "",
"stderr": "",
"exit_code": 1
}
}Turn 14at 256 s125 tokens out12,632 prompt tokens
No other files mention "duration" except `reana_client/cli/workflow.py` and `reana_client/utils.py` (and maybe `reana_client/api/client.py` or something, but I already searched for `get_workflow_duration`). Wait, `grep` might have returned nothing if everything is in `utils.py` and `workflow.py`. Let's check if `duration` appears anywhere else.
TOOL CALL · run_command
{
"command": "grep -rn \"duration\" reana_client"
}Result of run_command 2,081 characters
{
"status": "ok",
"stdout": "reana_client/cli/workflow.py:43: get_workflow_duration,\nreana_client/cli/workflow.py:108: \"progress, duration.\",\nreana_client/cli/workflow.py:126: \"--include-duration\",\nreana_client/cli/workflow.py:127: \"include_duration\",\nreana_client/cli/workflow.py:130: help=\"Include the duration of the workflows in seconds. In case a workflow is in \"\nreana_client/cli/workflow.py:131: \"progress, its duration as of now will be shown.\",\nreana_client/cli/workflow.py:172: include_duration: bool,\nreana_client/cli/workflow.py:225: duration_header = [\"duration\"]\nreana_client/cli/workflow.py:243: if verbose or include_duration:\nreana_client/cli/workflow.py:244: headers[type] += duration_header\nreana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\nreana_client/cli/workflow.py:688: \"--include-duration\",\nreana_client/cli/workflow.py:689: \"include_duration\",\nreana_client/cli/workflow.py:692: help=\"Include the duration of the workflow in seconds. In case the workflow is in \"\nreana_client/cli/workflow.py:693: \"progress, its duration as of now will be shown.\",\nreana_client/cli/workflow.py:700: ctx, workflow, _format, output_format, include_duration, access_token, verbose\nreana_client/cli/workflow.py:794: if verbose or include_duration:\nreana_client/cli/workflow.py:795: headers += [\"duration\"]\nreana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\nreana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\nreana_client/utils.py:135: \"\"\"Calculate the duration of the workflow.\nreana_client/utils.py:138: :return: The duration of the workflow in seconds or ``None`` if the starting\nreana_client/utils.py:151: duration = None\nreana_client/utils.py:160: duration = round((end_time - start_time).total_seconds())\nreana_client/utils.py:161: return duration\n",
"stderr": "",
"exit_code": 0
}Turn 15at 262 s49 tokens out13,479 prompt tokens
It seems I have covered all occurrences of "duration". Now I'll do a final check of the diff and submit.
TOOL CALL · run_command
{
"command": "git status --short && git diff"
}Result of run_command 938 characters
{
"status": "ok",
"stdout": " M reana_client/utils.py\ndiff --git a/reana_client/utils.py b/reana_client/utils.py\nindex b8596bf..c19ac20 100644\n--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"stderr": "",
"exit_code": 0
}Turn 16at 264 s18 tokens out13,877 prompt tokens
The diff looks clean and correct.
TOOL CALL · submit_patch
Result of submit_patch 55 characters
{
"status": "ok",
"patch_size": 824,
"files_changed": 1
}Turn 17at 274 s141 tokens out13,934 prompt tokens
I have fixed the bug in `reana_client/utils.py` by ensuring that `run_stopped_at` is used to calculate workflow duration if `run_finished_at` is not present. I verified the fix with a reproduction script and ran existing tests.
Turn 18at 274 s
The bug was caused by `reana_client.utils.get_workflow_duration` using the current time (`datetime.utcnow()`) instead of the workflow's stop time when `run_finished_at` was missing. I modified the function to check for and use `run_stopped_at` as the end time if present, which ensures that stopped workflows display their actual duration correctly.
Model calls (not matched to turns)
Generated tokens 238 tokens · stopped: STOP
The user is reporting a bug where the duration of stopped workflows is not displayed correctly when running `reana-client status --include-duration`. The duration should be the time between the run start and the run stop, but it's currently calculating the time from the run start until now for stopped workflows. The problem points to `reana_client.utils.get_workflow_duration` as the likely culprit. It says it only looks at `run_finished_at` but not `run_stopped_at`. Plan: 1. Examine `reana_client/utils.py` and the `get_workflow_duration` function. 2. Find where `get_workflow_duration` is used to ensure all calling paths are covered. 3. Create a reproduction test case to verify the bug. 4. Fix the bug by incorporating `run_stopped_at`. 5. Run tests to verify the fix.
<|channel>thought
The user is reporting a bug where the duration of stopped workflows is not displayed correctly when running `reana-client status --include-duration`.
The duration should be the time between the run start and the run stop, but it's currently calculating the time from the run start until now for stopped workflows.
The problem points to `reana_client.utils.get_workflow_duration` as the likely culprit. It says it only looks at `run_finished_at` but not `run_stopped_at`.
Plan:
1. Examine `reana_client/utils.py` and the `get_workflow_duration` function.
2. Find where `get_workflow_duration` is used to ensure all calling paths are covered.
3. Create a reproduction test case to verify the bug.
4. Fix the bug by incorporating `run_stopped_at`.
5. Run tests to verify the fix.<channel|><|tool_call>call:run_command{command:<|"|>grep -rn --include="*.py" "get_workflow_duration" .<|"|>}<tool_call|><|tool_response>
Generated tokens 120 tokens · stopped: STOP
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` (line 134) and used in `reana_client/cli/workflow.py`. It's also tested in `tests/test_utils.py`. Let's examine `reana_client/utils.py` around line 134.
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` (line 134) and used in `reana_client/cli/workflow.py`. It's also tested in `tests/test_utils.py`.
Let's examine `reana_client/utils.py` around line 134.<channel|><|tool_call>call:read_file{end_line:160,filepath:<|"|>reana_client/utils.py<|"|>,start_line:120}<tool_call|><|tool_response>
Generated tokens 319 tokens · stopped: STOP
I see the issue.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
When `run_finished_at` is missing, it uses `datetime.utcnow()`. If the workflow was stopped but not finished, it should probably use `run_stopped_at` if it exists.
Let's verify if `run_stopped_at` is available in the `progress` dictionary. The problem statement says "Similarly to what was happening in reanahub/reana-ui#386... we only look at `run_finished_at`, but not at `run_stopped_at`."
Now let's examine the tests in `tests/test_utils.py` to see how it's currently tested.
I see the issue.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
When `run_finished_at` is missing, it uses `datetime.utcnow()`. If the workflow was stopped but not finished, it should probably use `run_stopped_at` if it exists.
Let's verify if `run_stopped_at` is available in the `progress` dictionary. The problem statement says "Similarly to what was happening in reanahub/reana-ui#386... we only look at `run_finished_at`, but not at `run_stopped_at`."
Now let's examine the tests in `tests/test_utils.py` to see how it's currently tested.
<channel|><|tool_call>call:read_file{end_line:60,filepath:<|"|>tests/test_utils.py<|"|>,start_line:1}<tool_call|><|tool_response>
Generated tokens 427 tokens · stopped: STOP
I can add a test case for a stopped workflow. If `run_finished_at` is None, and `run_stopped_at` is present, it should use `run_stopped_at`. If both are None, it should use `utcnow()`. Wait, if it's "stopped", is it still "running" in terms of what we want to calculate? The problem says: "when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment." So if `run_stopped_at` is present, it should be used as `end_time`. Let's create a reproduction script.
I can add a test case for a stopped workflow.
If `run_finished_at` is None, and `run_stopped_at` is present, it should use `run_stopped_at`.
If both are None, it should use `utcnow()`.
Wait, if it's "stopped", is it still "running" in terms of what we want to calculate?
The problem says: "when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
So if `run_stopped_at` is present, it should be used as `end_time`.
Let's create a reproduction script.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-07-16T14:00:00",
"run_finished_at": None,
"run_stopped_at": "2022-07-16T14:05:00",
}
}
# Current behavior: uses utcnow(), which will be > 2022-07-16T14:05:00
# Desired behavior: uses run_stopped_at, which should give 5*60 = 300 seconds.
// Wait, let's just print it.
print(f"Duration for stopped workflow: {get_workflow_duration(workflow)}")
test_duration_stopped_workflow()
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 185 tokens · stopped: STOP
My apologies, I used `//` for comments in Python.
My apologies, I used `//` for comments in Python.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-07-16T14:00:00",
"run_finished_at": None,
"run_stopped_at": "2022-07-16T14:05:00",
}
}
print(f"Duration for stopped workflow: {get_workflow_duration(workflow)}")
test_duration_stopped_workflow()
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 318 tokens · stopped: STOP
The duration is indeed very large, which means it's using `datetime.utcnow()` instead of `run_stopped_at`. Now I will apply the fix. I should check if `run_stopped_at` is present in `progress` and use it if `run_finished_at` is not present. Wait, if both `run_finished_at` and `run_stopped_at` are present, which one should take precedence? Usually, if it's finished, it's finished. If it's stopped, it's stopped. If it finished, `run_finished_at` should be used. If it didn't finish but it was stopped, `run_stopped_at` should be used. If it's still running (neither finished nor stopped), `utcnow()` should be used. Revised logic: 1. `end_time = None` 2. if `run_finished_at`: `end_time = fromisoformat(run_finished_at)` 3. else if `run_stopped_at`: `end_time = fromisoformat(run_stopped_at)` 4. else: `end_time = datetime.utcnow()` Let's check `reana_client/utils.py` again.
The duration is indeed very large, which means it's using `datetime.utcnow()` instead of `run_stopped_at`.
Now I will apply the fix. I should check if `run_stopped_at` is present in `progress` and use it if `run_finished_at` is not present.
Wait, if both `run_finished_at` and `run_stopped_at` are present, which one should take precedence?
Usually, if it's finished, it's finished. If it's stopped, it's stopped.
If it finished, `run_finished_at` should be used.
If it didn't finish but it was stopped, `run_stopped_at` should be used.
If it's still running (neither finished nor stopped), `utcnow()` should be used.
Revised logic:
1. `end_time = None`
2. if `run_finished_at`: `end_time = fromisoformat(run_finished_at)`
3. else if `run_stopped_at`: `end_time = fromisoformat(run_stopped_at)`
4. else: `end_time = datetime.utcnow()`
Let's check `reana_client/utils.py` again.
<channel|><|tool_call>call:read_file{end_line:160,filepath:<|"|>reana_client/utils.py<|"|>,start_line:120}<tool_call|><|tool_response>
Generated tokens 349 tokens · stopped: STOP
I will now modify `get_workflow_duration` to include `run_stopped_at`.
I will now modify `get_workflow_duration` to include `run_stopped_at`.
<channel|><|tool_call>call:edit_file{filepath:<|"|>reana_client/utils.py<|"|>,new_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())<|"|>,old_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()<|"|>}<tool_call|><|tool_response>
Generated tokens 575 tokens · stopped: STOP
Wait, I see a mistake in the `edit_file` result. I duplicated the line `duration = round((end_time - start_time).total_seconds())`.
Actually, looking at the diff:
```diff
@@ -146,14 +146,18 @@
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
+ duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
return duration
```
Yes, I added `duration = round((end_time - start_time).total_seconds())` before the original one.
Let's fix this.
Wait, I see a mistake in the `edit_file` result. I duplicated the line `duration = round((end_time - start_time).total_seconds())`.
Actually, looking at the diff:
```diff
@@ -146,14 +146,18 @@
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
+ duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
return duration
```
Yes, I added `duration = round((end_time - start_time).total_seconds())` before the original one.
Let's fix this.
<channel|><|tool_call>call:edit_file{filepath:<|"|>reana_client/utils.py<|"|>,new_string:<|"|> if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())<|"|>,old_string:<|"|> if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())<|"|>}<tool_call|><|tool_response>
Generated tokens 188 tokens · stopped: STOP
Wait, the diff shows it removed one and kept one.
```diff
- duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
```
Actually, I think I had:
```python
duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
```
And I replaced it with
```python
duration = round((end_time - start_time).total_seconds())
```
So it should be correct now. Let me verify by reading the file.
Wait, the diff shows it removed one and kept one.
```diff
- duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
```
Actually, I think I had:
```python
duration = round((end_time - start_time).total_seconds())
duration = round((end_time - start_time).total_seconds())
```
And I replaced it with
```python
duration = round((end_time - start_time).total_seconds())
```
So it should be correct now. Let me verify by reading the file.
<channel|><|tool_call>call:read_file{end_line:165,filepath:<|"|>reana_client/utils.py<|"|>,start_line:140}<tool_call|><|tool_response>
Generated tokens 185 tokens · stopped: STOP
Perfect. Now let's re-run the reproduction script.
Perfect. Now let's re-run the reproduction script.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-07-16T14:00:00",
"run_finished_at": None,
"run_stopped_at": "2022-07-16T14:05:00",
}
}
print(f"Duration for stopped workflow: {get_workflow_duration(workflow)}")
test_duration_stopped_workflow()
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 170 tokens · stopped: STOP
The reproduction script now outputs `300`, which is correct (5 minutes * 60 seconds). Now I should add a proper test case to `tests/test_utils.py` and run it, as well as make sure no existing tests are broken. I'll use `pytest` to run the tests. Wait, I cannot modify `tests/` for the final submission, but I can add tests to verify my work. However, the grading harness reverts changes to `tests/`. I should verify using a standalone script or by running the existing tests. Let's run existing tests in `tests/test_utils.py`.
The reproduction script now outputs `300`, which is correct (5 minutes * 60 seconds).
Now I should add a proper test case to `tests/test_utils.py` and run it, as well as make sure no existing tests are broken. I'll use `pytest` to run the tests.
Wait, I cannot modify `tests/` for the final submission, but I can add tests to verify my work. However, the grading harness reverts changes to `tests/`. I should verify using a standalone script or by running the existing tests.
Let's run existing tests in `tests/test_utils.py`.
<channel|><|tool_call>call:run_command{command:<|"|>pytest tests/test_utils.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Generated tokens 226 tokens · stopped: STOP
The existing tests passed. Now let's double check for any other parallel paths. I searched for `get_workflow_duration` and found it used in: - `reana_client/cli/workflow.py` - `reana_client/utils.py` - `tests/test_utils.py` The implementation is in `reana_client/utils.py`. It seems there is only one implementation. One thing to consider: is there any other function that calculates duration? The user mentioned `reana-client status`, `list`, and others that use `--include-duration`. In `reana_client/cli/workflow.py`, we see `get_workflow_duration` being used. Let's check `reana_client/cli/workflow.py` to see if there are any other ways durations are calculated.
The existing tests passed.
Now let's double check for any other parallel paths.
I searched for `get_workflow_duration` and found it used in:
- `reana_client/cli/workflow.py`
- `reana_client/utils.py`
- `tests/test_utils.py`
The implementation is in `reana_client/utils.py`. It seems there is only one implementation.
One thing to consider: is there any other function that calculates duration?
The user mentioned `reana-client status`, `list`, and others that use `--include-duration`.
In `reana_client/cli/workflow.py`, we see `get_workflow_duration` being used.
Let's check `reana_client/cli/workflow.py` to see if there are any other ways durations are calculated.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn --include="*.py" "duration" reana_client/cli/workflow.py<|"|>}<tool_call|><|tool_response>
Generated tokens 224 tokens · stopped: STOP
Both usages in `reana_client/cli/workflow.py` use `get_workflow_duration(workflow)`. I'm confident with the fix. Final check: - `run_started_at` missing: returns `None`. - `run_started_at` present, `run_finished_at` present: uses `run_finished_at`. - `run_started_at` present, `run_finished_at` missing, `run_stopped_at` present: uses `run_stopped_at`. - `run_started_at` present, `run_finished_at` missing, `run_stopped_at` missing: uses `utcnow()`. This covers all cases. Let me check if there are any other files where duration is calculated.
Both usages in `reana_client/cli/workflow.py` use `get_workflow_duration(workflow)`.
I'm confident with the fix.
Final check:
- `run_started_at` missing: returns `None`.
- `run_started_at` present, `run_finished_at` present: uses `run_finished_at`.
- `run_started_at` present, `run_finished_at` missing, `run_stopped_at` present: uses `run_stopped_at`.
- `run_started_at` present, `run_finished_at` missing, `run_stopped_at` missing: uses `utcnow()`.
This covers all cases.
Let me check if there are any other files where duration is calculated.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn --include="*.py" "duration" reana_client | grep -v "workflow.py" | grep -v "utils.py"<|"|>}<tool_call|><|tool_response>
Generated tokens 125 tokens · stopped: STOP
No other files mention "duration" except `reana_client/cli/workflow.py` and `reana_client/utils.py` (and maybe `reana_client/api/client.py` or something, but I already searched for `get_workflow_duration`). Wait, `grep` might have returned nothing if everything is in `utils.py` and `workflow.py`. Let's check if `duration` appears anywhere else.
No other files mention "duration" except `reana_client/cli/workflow.py` and `reana_client/utils.py` (and maybe `reana_client/api/client.py` or something, but I already searched for `get_workflow_duration`).
Wait, `grep` might have returned nothing if everything is in `utils.py` and `workflow.py`.
Let's check if `duration` appears anywhere else.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn "duration" reana_client<|"|>}<tool_call|><|tool_response>
Generated tokens 49 tokens · stopped: STOP
It seems I have covered all occurrences of "duration". Now I'll do a final check of the diff and submit.
It seems I have covered all occurrences of "duration".
Now I'll do a final check of the diff and submit.
<channel|><|tool_call>call:run_command{command:<|"|>git status --short && git diff<|"|>}<tool_call|><|tool_response>
Generated tokens 18 tokens · stopped: STOP
The diff looks clean and correct.
The diff looks clean and correct.
<channel|><|tool_call>call:submit_patch{}<tool_call|><|tool_response>
Patch, tests and logs
Final code change Included
diff --git a/reana_client/utils.py b/reana_client/utils.py
index b8596bf..c19ac20 100644
--- a/reana_client/utils.py
+++ b/reana_client/utils.py
@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
Test output Included
============================= test session starts ============================== collected 139 items tests/test_cli_files.py ................... [ 13%] tests/test_cli_ping.py .... [ 16%] tests/test_cli_retention_rules.py . [ 17%] tests/test_cli_secrets.py ......... [ 23%] tests/test_cli_workflows.py ............................................ [ 55%] ...x.... [ 61%] tests/test_utils.py .... [ 64%] tests/test_validate_compute_backends.py .................... [ 78%] tests/test_validate_environments.py ................ [ 89%] tests/test_validate_parameters.py ........ [ 95%] tests/test_validate_server_capabilities.py ..... [ 99%] tests/test_version.py . [100%] ==================================== PASSES ==================================== _____________ test_create_snakemake_workflow_from_json_parameters ______________ ----------------------------- Captured stdout call ----------------------------- Building DAG of jobs... Job stats: job count ----- ------- foo 1 total 1 ------------------------------ Captured log call ------------------------------- WARNING snakemake.logging:logging.py:580 Building DAG of jobs... WARNING snakemake.logging:logging.py:590 Job stats: job count ----- ------- foo 1 total 1 _________________________ test_validate_parameters_cwl _________________________ ----------------------------- Captured stderr call ----------------------------- /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools - generated xml file: /tmp/rebench-grade-da6a12926e6445e8a1ffb5caadef3689.xml -- ---------- coverage: platform linux, python 3.10.19-final-0 ---------- Name Stmts Miss Cover Missing --------------------------------------------------------------------------- reana_client/__init__.py 4 0 100% reana_client/api/__init__.py 2 0 100% reana_client/api/client.py 415 226 46% 57, 63-71, 84-105, 155-170, 190-205, 229-244, 286, 288, 290, 293, 303, 328-343, 367-382, 411-427, 442-469, 507-525, 554, 560-567, 598-613, 629, 631-634, 640-641, 646, 649-650, 655-665, 677, 686-692, 711-726, 738-760, 776-811, 825-850, 869-896, 923-937, 956-970, 995-1010, 1039-1054, 1080, 1096-1098, 1116-1136, 1154-1169, 1190-1205, 1220-1244, 1269-1282 reana_client/api/utils.py 9 0 100% reana_client/cli/__init__.py 47 18 62% 60-77 reana_client/cli/cwl_runner.py 159 159 0% 8-265 reana_client/cli/files.py 306 74 76% 45, 159-168, 221-236, 257, 265-280, 282, 322-328, 336-342, 350-354, 373-374, 404-405, 411-412, 421-438, 440, 490-497, 530-534, 577-584, 643-649 reana_client/cli/ping.py 60 22 63% 25, 67-74, 87, 112-130 reana_client/cli/quotas.py 41 22 46% 30, 72-116 reana_client/cli/retention_rules.py 28 5 82% 29, 64-67 reana_client/cli/secrets.py 73 18 75% 30, 85-91, 113-127, 154-160 reana_client/cli/utils.py 183 52 72% 162, 165-166, 186-190, 193, 197-203, 211-212, 257-258, 288-294, 300-304, 322-328, 340-408 reana_client/cli/workflow.py 579 210 64% 60, 67, 369-370, 388-395, 488-497, 589-668, 718, 726, 731, 749-751, 761-765, 770-773, 800-808, 844-937, 1003-1011, 1013-1020, 1022-1028, 1054-1080, 1207-1235, 1277-1336, 1342, 1412-1421, 1450-1459 reana_client/config.py 35 0 100% reana_client/errors.py 4 0 100% reana_client/printer.py 17 2 88% 41-47 reana_client/utils.py 120 29 76% 31-37, 74, 78, 89, 97, 119-124, 128-131, 166-185, 244-251, 280 reana_client/validation/__init__.py 1 0 100% reana_client/validation/compute_backends.py 14 3 79% 32-38 reana_client/validation/environments.py 200 135 32% 42-62, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 225-244, 249-308, 325, 328-338, 341-363, 380-395, 407-410, 419-429, 434-462, 471-484, 492-503 reana_client/validation/parameters.py 31 0 100% reana_client/validation/utils.py 64 17 73% 39-47, 56, 62-81, 87, 105-109 reana_client/validation/workspace.py 15 0 100% reana_client/version.py 3 0 100% --------------------------------------------------------------------------- TOTAL 2410 992 59% Coverage XML written to file coverage.xml =========================== short test summary info ============================ PASSED tests/test_cli_files.py::test_list_files_server_not_reachable PASSED tests/test_cli_files.py::test_list_files_server_no_token PASSED tests/test_cli_files.py::test_list_files_ok PASSED tests/test_cli_files.py::test_list_files_url PASSED tests/test_cli_files.py::test_download_file PASSED tests/test_cli_files.py::test_download_file_stdout PASSED tests/test_cli_files.py::test_download_multiple_files_stdout PASSED tests/test_cli_files.py::test_upload_file PASSED tests/test_cli_files.py::test_upload_file_respect_gitignore PASSED tests/test_cli_files.py::test_upload_file_skip_empty_git_and_reana_ignore_files PASSED tests/test_cli_files.py::test_upload_file_respect_reanaignore_and_gitignore PASSED tests/test_cli_files.py::test_delete_file PASSED tests/test_cli_files.py::test_delete_non_existing_file PASSED tests/test_cli_files.py::test_move_files PASSED tests/test_cli_files.py::test_list_files_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_valid_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_invalid_filter PASSED tests/test_cli_files.py::test_list_files_filter_with_filename PASSED tests/test_cli_files.py::test_prune_workspace PASSED tests/test_cli_ping.py::test_ping_token_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_reachable PASSED tests/test_cli_ping.py::test_ping_ok PASSED tests/test_cli_retention_rules.py::test_retention_rules_list PASSED tests/test_cli_secrets.py::test_secrets_list_server_not_reachable PASSED tests/test_cli_secrets.py::test_secrets_list_server_no_token PASSED tests/test_cli_secrets.py::test_secrets_list_ok PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reanauser] PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reana=user] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[wrongformat] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[PASS:123] PASSED tests/test_cli_secrets.py::test_secrets_add_already_exist PASSED tests/test_cli_secrets.py::test_secrets_delete PASSED tests/test_cli_workflows.py::test_workflows_server_not_connected PASSED tests/test_cli_workflows.py::test_workflows_no_token PASSED tests/test_cli_workflows.py::test_workflows_server_ok PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options0-expected_status_filter0] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options1-expected_status_filter1] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options2-expected_status_filter2] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options3-expected_status_filter3] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options4-expected_status_filter4] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options5-expected_status_filter5] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options6-expected_status_filter6] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options7-expected_status_filter7] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options8-expected_status_filter8] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ] PASSED tests/test_cli_workflows.py::test_workflows_sessions PASSED tests/test_cli_workflows.py::test_workflows_valid_json PASSED tests/test_cli_workflows.py::test_workflows_include_progress PASSED tests/test_cli_workflows.py::test_workflows_without_include_progress PASSED tests/test_cli_workflows.py::test_workflows_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_without_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_format PASSED tests/test_cli_workflows.py::test_workflows_filter PASSED tests/test_cli_workflows.py::test_workflow_create_failed PASSED tests/test_cli_workflows.py::test_workflow_create_successful PASSED tests/test_cli_workflows.py::test_workflow_create_not_valid_name PASSED tests/test_cli_workflows.py::test_create_workflow_from_json PASSED tests/test_cli_workflows.py::test_create_snakemake_workflow_from_json_parameters PASSED tests/test_cli_workflows.py::test_workflow_start_successful[created-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[pending-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[queued-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[running-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[deleted-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[queued-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[pending-deleted-1] PASSED tests/test_cli_workflows.py::test_workflows_validate PASSED tests/test_cli_workflows.py::test_get_workflow_status_ok PASSED tests/test_cli_workflows.py::test_run PASSED tests/test_cli_workflows.py::test_workflow_input_parameters PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info0-True] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info1-False] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info2-False] PASSED tests/test_cli_workflows.py::test_close_interactive_session PASSED tests/test_cli_workflows.py::test_multiple_specifications PASSED tests/test_cli_workflows.py::test_yml_ext_specification PASSED tests/test_cli_workflows.py::test_run_with_no_inputs PASSED tests/test_utils.py::test_duration_pending_workflow PASSED tests/test_utils.py::test_duration_finished_workflow PASSED tests/test_utils.py::test_duration_stopped_workflow PASSED tests/test_utils.py::test_duration_running_workflow PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:baz-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar-not have an explicit tag-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:master-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar -contains illegal characters-True] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-bar-foo:bar] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo--foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-None-foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-latest-foo:latest] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7] PASSED tests/test_validate_parameters.py::test_validate_parameters_cwl PASSED tests/test_validate_parameters.py::test_validate_parameters_serial PASSED tests/test_validate_parameters.py::test_validate_parameters_yadage PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands0-gendata-] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4] PASSED tests/test_version.py::test_version XFAIL tests/test_cli_workflows.py::test_open_interactive_session[wrong-interactive-type-reana_info3-True] ======================= 138 passed, 1 xfailed in 11.76s ========================
Test errors Included
/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources
Test report (JUnit) Included
<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="1" tests="139" time="11.758" timestamp="2026-11-14T04:51:41.075797" hostname="5c717da58984"><testcase classname="tests.test_cli_files" name="test_list_files_server_not_reachable" time="0.002" /><testcase classname="tests.test_cli_files" name="test_list_files_server_no_token" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_ok" time="0.133" /><testcase classname="tests.test_cli_files" name="test_list_files_url" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file_stdout" time="0.002" /><testcase classname="tests.test_cli_files" name="test_download_multiple_files_stdout" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_gitignore" time="0.002" /><testcase classname="tests.test_cli_files" name="test_upload_file_skip_empty_git_and_reana_ignore_files" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_reanaignore_and_gitignore" time="0.004" /><testcase classname="tests.test_cli_files" name="test_delete_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_delete_non_existing_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_move_files" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_valid_filter" time="0.124" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_invalid_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_files_filter_with_filename" time="0.123" /><testcase classname="tests.test_cli_files" name="test_prune_workspace" time="0.171" /><testcase classname="tests.test_cli_ping" name="test_ping_token_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_reachable" time="0.124" /><testcase classname="tests.test_cli_ping" name="test_ping_ok" time="0.124" /><testcase classname="tests.test_cli_retention_rules" name="test_retention_rules_list" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_not_reachable" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_no_token" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_ok" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reanauser]" time="0.124" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reana=user]" time="0.124" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[wrongformat]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[PASS:123]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_already_exist" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_delete" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_not_connected" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_no_token" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_ok" time="0.129" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options0-expected_status_filter0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options1-expected_status_filter1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options2-expected_status_filter2]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options3-expected_status_filter3]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options4-expected_status_filter4]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options5-expected_status_filter5]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options6-expected_status_filter6]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options7-expected_status_filter7]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options8-expected_status_filter8]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sessions" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_valid_json" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_progress" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_progress" time="0.126" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_workspace_size" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_workspace_size" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_format" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_filter" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_failed" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_successful" time="0.130" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_not_valid_name" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_create_workflow_from_json" time="0.129" /><testcase classname="tests.test_cli_workflows" name="test_create_snakemake_workflow_from_json_parameters" time="0.320" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[created-0]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[pending-0]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[queued-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[running-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[finished-0]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[failed-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[deleted-1]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[stopped-1]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-failed-1]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-stopped-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[queued-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[pending-deleted-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_validate" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_get_workflow_status_ok" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_run" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_input_parameters" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info0-True]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info1-False]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info2-False]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[wrong-interactive-type-reana_info3-True]" time="0.125"><skipped type="pytest.xfail" message="" /></testcase><testcase classname="tests.test_cli_workflows" name="test_close_interactive_session" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_multiple_specifications" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_yml_ext_specification" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_run_with_no_inputs" time="0.003" /><testcase classname="tests.test_utils" name="test_duration_pending_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_finished_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_stopped_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_running_workflow" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends0-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends1-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends2-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends3-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[htcondorcern-supported_backends4-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:baz-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar-not have an explicit tag-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:master-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:-has invalid tag-True]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar -contains illegal characters-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-bar-foo:bar]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo--foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-None-foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-latest-foo:latest]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_cwl" time="4.015" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_serial" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_yadage" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands0-gendata-]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0]" time="0.130" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1]" time="0.123" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2]" time="0.130" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3]" time="0.131" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4]" time="0.131" /><testcase classname="tests.test_version" name="test_version" time="0.000" /></testsuite></testsuites>
Agent log Included
[ 0.0s] 📋 System Prompt: You are a principal Python software engineer resolving a repository issue in `/workspace`.
[ 0.0s] 🎯 Task Prompt: You are evaluating a software engineering task for repository reanahub/reana-client.
[ 17.6s] 💭 (783 chars) "The user is reporting a bug where the duration of stopped workflows is not displayed
correctly when running `reana-clien..."
[ 17.6s] 🔧 run_command grep -rn --include="*.py" "get_workflow_duration" .
[ 17.7s] → ./reana_client/cli/workflow.py:43: get_workflow_duration,
[ 27.0s] 💭 (221 chars) "Okay, `get_workflow_duration` is defined in `reana_client/utils.py` (line 134) and used in
`reana_client/cli/workflow.py..."
[ 27.0s] 📖 read_file (reana_client/utils.py)
[ 27.0s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': ' # `workflow_name` was
split, so it is a do…
[ 54.5s] 💭 (960 chars) "I see the issue.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at..."
[ 54.5s] 📖 read_file (tests/test_utils.py)
[ 54.6s] ✓ {'status': 'ok', 'filepath': 'tests/test_utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This file
is part of REANA…
[ 90.6s] 💭 (689 chars) "I can add a test case for a stopped workflow.
If `run_finished_at` is None, and `run_stopped_at` is present, it should u..."
[ 90.6s] 🔧 run_command (19 lines) python3 - <<'PY'
[ 90.6s] → error (exit 0):
[ 98.0s] 💭 (49 chars) "My apologies, I used `//` for comments in Python."
[ 98.0s] 🔧 run_command (16 lines) python3 - <<'PY'
[ 98.8s] → Duration for stopped workflow: 136651721
[ 128.6s] 💭 (881 chars) "The duration is indeed very large, which means it's using `datetime.utcnow()` instead of
`run_stopped_at`.
Now I will a..."
[ 128.6s] 📖 read_file (reana_client/utils.py)
[ 128.7s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': ' # `workflow_name` was
split, so it is a do…
[ 147.0s] 💭 (70 chars) "I will now modify `get_workflow_duration` to include `run_stopped_at`."
[ 147.0s] ✏️ edit_file (reana_client/utils.py)
[ 147.2s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'occurrences': 1, 'strategy': 'exact', 'diff':
'--- a/reana_client…
[ 173.1s] 💭 (997 chars) "Wait, I see a mistake in the `edit_file` result. I duplicated the line `duration =
round((end_time - start_time).total_s..."
[ 173.1s] ✏️ edit_file (reana_client/utils.py)
[ 173.3s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'occurrences': 1, 'strategy': 'exact', 'diff':
'--- a/reana_client…
[ 188.7s] 💭 (533 chars) "Wait, the diff shows it removed one and kept one.
```diff
- duration = round((end_time - start_time).total_second..."
[ 188.7s] 📖 read_file (reana_client/utils.py)
[ 188.7s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': ' """\n\n # FIXME: Use
datetime.fromisoformat whe…
[ 195.5s] 💭 (50 chars) "Perfect. Now let's re-run the reproduction script."
[ 195.5s] 🔧 run_command (16 lines) python3 - <<'PY'
[ 195.8s] → Duration for stopped workflow: 300
[ 210.7s] 💭 (529 chars) "The reproduction script now outputs `300`, which is correct (5 minutes * 60 seconds).
Now I should add a proper test ca..."
[ 210.7s] 🔧 run_command pytest tests/test_utils.py -q --tb=short --no-header
[ 212.6s] → ... [100%]
[ 229.8s] 💭 (671 chars) "The existing tests passed.
Now let's double check for any other parallel paths.
I searched for `get_workflow_duration` ..."
[ 229.8s] 🔧 run_command grep -rn --include="*.py" "duration" reana_client/cli/workflow.py
[ 229.8s] → 43: get_workflow_duration,
[ 243.5s] 💭 (549 chars) "Both usages in `reana_client/cli/workflow.py` use `get_workflow_duration(workflow)`.
I'm confident with the fix.
Final..."
[ 243.5s] 🔧 run_command grep -rn --include="*.py" "duration" reana_client | grep -v "workflow.py" | grep
[ 243.5s] → error (exit 0):
[ 255.3s] 💭 (348 chars) "No other files mention "duration" except `reana_client/cli/workflow.py` and
`reana_client/utils.py` (and maybe `reana_cl..."
[ 255.3s] 🔧 run_command grep -rn "duration" reana_client
[ 255.3s] → reana_client/cli/workflow.py:43: get_workflow_duration,
[ 261.3s] 💭 (105 chars) "It seems I have covered all occurrences of "duration".
Now I'll do a final check of the diff and submit."
[ 261.3s] 🔧 run_command git status --short && git diff
[ 261.3s] → M reana_client/utils.py
[ 263.2s] 💭 (33 chars) "The diff looks clean and correct."
[ 263.2s] 🤖 submit_patch
[ 263.3s] → submit_patch: {"status": "ok", "patch_size": 824, "files_changed": 1}
[ 274.0s] 💭 (227 chars) "I have fixed the bug in `reana_client/utils.py` by ensuring that `run_stopped_at` is used to
calculate workflow duration..."
[ 274.0s] ✅ Agent finished: The bug was caused by `reana_client.utils.get_workflow_duration` using the current time
(`datetime.utcnow()`) instead of the workflow's stop time when `run_finished_at` was missing. I modified the fun...
Native result row
{
"agent_error": null,
"duration_seconds": 291.22,
"error": null,
"grade": {
"collected_tests": 139,
"competition_junit_ok": true,
"error": null,
"required_issues_count": 0,
"resolved": true,
"status_counts": {
"PASSED": 138,
"SKIPPED": 1
},
"strict_clean_patch": true,
"test_exit_code": 0
},
"instance_id": "reanahub__reana-client-701",
"pass_idx": 0,
"patch_chars": 824,
"phase1_seconds": 276.72,
"repo": "reanahub/reana-client",
"request_log_path": "/kaggle-root/working/r31/rollouts_X/requests/reanahub__reana-client-701__p0__r7.jsonl",
"resolved": true,
"rollout_idx": 7,
"run_key": "reanahub__reana-client-701__p0__r7",
"strict_clean_patch": true,
"tool_calls": 15,
"total_llm_calls": 17,
"trace_path": "/kaggle-root/working/r31/rollouts_X/traces/trace_reanahub__reana-client-701__p0__r7.json"
}