ROLLOUT 2 · reanahub/reana-client
reanahub__reana-client-701
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15model calls
3,781tokens generated
143,649prompt tokens read
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System instructions 4,822 characters
You are a principal Python software engineer resolving a repository issue in `/workspace`. Your sole objective is to produce a minimal, root-cause source patch that passes every hidden fail-to-pass and pass-to-pass regression test on the first grading run. ## Critical Environment & Grader Rules 1. **Air-Gapped Sandbox & Available CLI Tools**: No network access. Never run `pip`, `uv`, `conda`, or `git fetch`. Note: `rg` (`ripgrep`) is NOT installed in the container — always use `grep -rn --include="*.py"` for fast exact searches so you never waste a tool call on `command not found`. 2. **Protected Grading Paths**: Before running official verification, the grading harness **strips and reverts all changes** to `tests/`, `test/`, `testing/`, `test_*.py`, `*_test.py`, `conftest.py`, `pyproject.toml`, `setup.cfg`, `pytest.ini`, and `tox.ini`. Every part of your fix MUST reside in non-test production source files. 3. **Untracked File Trap (`git add -N .`)**: `submit_patch` stages ALL untracked files inside `/workspace`! Never leave reproduction or scratch files inside `/workspace` — run reproductions inline via `python3 - <<'PY'` or inside `/tmp/repro.py` in a single `run_command`. 4. **Stdout Truncation Rule**: `run_command` truncates stdout after the first 5,000 characters from the TOP. Always run pytest quietly with short tracebacks: `pytest path/to/test_file.py -k pattern -q --tb=short --no-header` If a test file is large, redirect output to `/tmp/pytest.log` and inspect `tail -n 80 /tmp/pytest.log` so failure tracebacks at the bottom are never cut off. 5. **Strict Pacing Discipline**: `get_status` and `submit_patch` are free and do NOT count toward `max_tool_calls`. Target **16-22 counted tool calls total**, and **begin your first `edit_file` change no later than tool call 15**. Reserve at least 4 calls for verification, `git status --short && git diff`, and submission. ## Execution Protocol ### Phase 1 — Pinpoint Code & Tests Immediately (1-2 tool calls) - The user message already contains `Workspace Layout` — do NOT waste a turn running `ls` on top-level directories. - Run a single compound `run_command` with `grep -rn --include="*.py"` to locate: (a) the exact symbols, error strings, or functions from the problem description, (b) **all parallel or sibling implementations** (for example sync + async variants, `Client` + `AsyncClient`, serializer + deserializer, multiple backends/dialects, base + subclass methods, `__init__.py` / `__all__` exports), and (c) the closest existing unit test files under `tests/`. ### Phase 2 — Deep Read & Spec Anchor (2-5 tool calls) - Use `read_file` with generous `start_line` and `end_line` windows (180-300 lines per call so you read whole modules in fewer calls) on the target function/class, callers, type annotations, and neighboring tests. - Before editing, verify every explicit and implicit requirement from the issue: exact parameter names, defaults, boundary/domain edge cases, exception types/messages, `None` vs empty collection vs falsy (`0`, `False`, `""`) semantics, mutability/copying, and return types. ### Phase 3 — Reproduce Bug in One Call (1 tool call) - Run ONE concise command (`python3 - <<'PY' ... PY` or targeted `pytest ... -q --tb=short --no-header`) via `run_command` to observe the exact pre-fix failure. Do NOT spend multiple tool calls writing separate reproduction scripts. ### Phase 4 — Surgical Implementation Across All Parallel Paths (1-4 tool calls) - Begin editing by tool call 15! Use `edit_file` with 4-6 lines of exact surrounding context copied from `read_file`. - Update ALL parallel codepaths (sync/async, multiple classes/dialects, type hints) consistently so partial fixes do not fail sibling tests. - **2-Strike Edit Rule**: If `edit_file` fails twice on the same block due to whitespace or escaping, do not retry `edit_file` a third time — apply an atomic Python transformation via `run_command` and immediately verify `python3 -m py_compile path/to/file.py`. ### Phase 5 — Edge-Case Verification, Diff Hygiene & Clean Exit (2-4 tool calls) - Run a single compound `run_command` testing both your reproduction + boundary edge cases (`None`, empty input, leading/trailing delimiters, subdomain/prefix boundaries, subclass/async parity) AND the relevant existing `pytest` module(s) with `-q --tb=short --no-header`. - Run `git status --short && git diff` via `run_command`. Confirm: - ZERO untracked (`??`) files in `/workspace` (`rm -f` any untracked workspace files immediately), - ZERO modifications to `tests/` or protected config files (`git checkout -- tests/` if touched), - Minimal, clean diff with valid imports and indentation. - Call `submit_patch` once verification passes, then respond with a brief 2-sentence plain-text summary and make NO further tool calls.
Task prompt 6,896 characters
You are evaluating a software engineering task for repository reanahub/reana-client. Problem Statement: cli: duration of stopped workflows is not displayed correctly Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment. ```console ❯ reana-client status -w recast --include-duration --json | jq '.[0].status' "stopped" ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2598 # After a few seconds... ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2604 ``` This is very likely because in [`reana_client.utils.get_workflow_duration`](https://github.com/reanahub/reana-client/blob/5b278f131b59d3ecfd3c7f129040a126cd01b60a/reana_client/utils.py#L134) we only look at `run_finished_at`, but not at `run_stopped_at`. ## Hints: codecov[bot]: ## [Codecov](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) Report All modified and coverable lines are covered by tests :white_check_mark: > Comparison is base [(`fa5b7c7`)](https://app.codecov.io/gh/reanahub/reana-client/commit/fa5b7c76eb25bfb1591e6fae4a142d975e14b937?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.57% compared to head [(`d3925f2`)](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.62%. <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) ```diff @@ Coverage Diff @@ ## master #701 +/- ## ========================================== + Coverage 58.57% 58.62% +0.05% ========================================== Files 24 24 Lines 2390 2393 +3 ========================================== + Hits 1400 1403 +3 Misses 990 990 ``` | [Files](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) | Coverage Δ | | |---|---|---| | [reana\_client/api/client.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L2FwaS9jbGllbnQucHk=) | `45.54% <100.00%> (ø)` | | | [reana\_client/utils.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3V0aWxzLnB5) | `76.47% <100.00%> (+0.60%)` | :arrow_up: | | [reana\_client/validation/environments.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3ZhbGlkYXRpb24vZW52aXJvbm1lbnRzLnB5) | `32.50% <ø> (ø)` | | </details> giuseppe-steduto: Note for the reviewer: I chose `status` as the scope of the commit because I think that the commands affected by the PR are a nice user-facing scope for changes to the client. For example, this PR fixes `status`, `list`, and in general the commands that use the `--include-duration` flag, I chose `status` as it is the one most evidently impacted. WDYT? mdonadoni: Regarding the scope, I think `fix(status)` can be a good choice. WDYT @tiborsimko ? ## Task Budget (Session terminates when any budget is exhausted) - Time allowance: 7.5 minutes - Tool calls allowance: 30 calls - Max loop iterations: 40 turns ## Execution Environment Rules - Single command timeout: 90 seconds (commands exceeding this fail without ending the session) - Command output limit: 5000 characters - File view limit: 150 lines per read_file call - File character limit: 10000 characters per read_file call - Environment is offline (no network/PyPI access). All repository and test dependencies are ALREADY pre-installed. Do NOT attempt to run pip install or download packages. ## Instructions: 0. All source code is under `/workspace`. Do NOT search outside `/workspace` (e.g. `/usr/`, `/wheels/`, system site-packages). If imports fail, the issue is in the source code under `/workspace`, not in missing system packages. 1. Analyze the problem statement and any provided hints carefully to identify all requested script paths, CLI subcommands, or Python modules. 2. Inspect existing codebase conventions and test files before making edits. 3. Verify your implementation using targeted tests or inline assertions before submitting. 4. Call submit_patch only after your implementation is complete and verified. 5. As your final action, you must return a text-only response reporting your completion to terminate the session. ## Workspace Layout The repository is located at `/workspace`. Here is the directory tree (up to 3 levels): ``` ./AUTHORS.rst ./CHANGELOG.md ./CHANGES.rst ./CONTRIBUTING.rst ./LICENSE ./MANIFEST.in ./README.rst ./docs ./pytest.ini ./reana_client ./reana_client/__init__.py ./reana_client/api ./reana_client/api/__init__.py ./reana_client/api/client.py ./reana_client/api/utils.py ./reana_client/cli ./reana_client/cli/__init__.py ./reana_client/cli/cwl_runner.py ./reana_client/cli/files.py ./reana_client/cli/ping.py ./reana_client/cli/quotas.py ./reana_client/cli/retention_rules.py ./reana_client/cli/secrets.py ./reana_client/cli/utils.py ./reana_client/cli/workflow.py ./reana_client/config.py ./reana_client/errors.py ./reana_client/printer.py ./reana_client/utils.py ./reana_client/validation ./reana_client/validation/__init__.py ./reana_client/validation/compute_backends.py ./reana_client/validation/environments.py ./reana_client/validation/parameters.py ./reana_client/validation/utils.py ./reana_client/validation/workspace.py ./reana_client/version.py ./requirements-dev.txt ./run-tests.sh ./scripts ./scripts/create-appimage.sh ./scripts/generate_cli_api.py ./setup.cfg ./setup.py ./tests ./tox.ini ```
Turn 1at 14 s217 tokens out4,359 prompt tokens
The user is reporting a bug where the duration of stopped workflows is calculated incorrectly in `reana-client status --include-duration`. It seems the duration is calculated from the start time to the current time, instead of the start time to the stopped time. The problem description points to `reana_client.utils.get_workflow_duration` as the likely cause, mentioning that it only looks at `run_finished_at` but not `run_stopped_at`. I need to: 1. Locate `reana_client.utils.get_workflow_duration`. 2. Analyze how it calculates duration. 3. Create a reproduction case. 4. Fix the bug by considering `run_stopped_at`. 5. Verify the fix. Let's start by finding the function and the related code.
TOOL CALL · run_command
{
"command": "grep -rn --include=\"*.py\" \"get_workflow_duration\" ."
}Result of run_command 748 characters
{
"status": "ok",
"stdout": "./reana_client/cli/workflow.py:43: get_workflow_duration,\n./reana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\n./reana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\n./reana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\n./tests/test_utils.py:14:from reana_client.utils import get_workflow_duration\n./tests/test_utils.py:24: assert get_workflow_duration(workflow) is None\n./tests/test_utils.py:34: assert get_workflow_duration(workflow) == 60 + 11\n./tests/test_utils.py:49: assert get_workflow_duration(workflow) == 60 + 11\n",
"stderr": "",
"exit_code": 0
}Turn 2at 21 s125 tokens out4,857 prompt tokens
Okay, the function `get_workflow_duration` is defined in `reana_client/utils.py` at line 134. It is used in `reana_client/cli/workflow.py` and tested in `tests/test_utils.py`. Let's read the definition of `get_workflow_duration` in `reana_client/utils.py`.
TOOL CALL · read_file
{
"end_line": 160,
"filepath": "reana_client/utils.py",
"start_line": 120
}Result of read_file 1,674 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": " # `workflow_name` was split, so it is a dot-separated string\n # but it didn't contain a valid `run_number`.\n # Assume that this dot-separated string is the name of\n # the workflow and return just this without a `run_number`.\n return workflow_name, \"\"\n\n return name, run_number\n\n except ValueError:\n # Couldn't split. Probably not a dot-separated string.\n # Return the name given as parameter without a `run_number`.\n return workflow_name, \"\"\n\n\ndef get_workflow_duration(workflow: Dict) -> Optional[int]:\n \"\"\"Calculate the duration of the workflow.\n\n :param workflow: Workflow details returned by the server.\n :return: The duration of the workflow in seconds or ``None`` if the starting\n time is not present.\n \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n",
"start_line": 120,
"end_line": 160,
"total_lines": 277,
"is_truncated": false
}Turn 3at 37 s269 tokens out5,490 prompt tokens
The implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`.
For a "stopped" workflow, it might have `run_stopped_at` instead of `run_finished_at`.
Let's check `tests/test_utils.py` to see how it's currently tested.
TOOL CALL · read_file
{
"filepath": "tests/test_utils.py"
}Result of read_file 1,574 characters
{
"status": "ok",
"filepath": "tests/test_utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\n\"\"\"REANA client utils tests.\"\"\"\n\nfrom unittest.mock import patch\nfrom datetime import datetime\n\nfrom reana_client.utils import get_workflow_duration\n\n\ndef test_duration_pending_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": None,\n \"run_finished_at\": None,\n }\n }\n assert get_workflow_duration(workflow) is None\n\n\ndef test_duration_finished_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": \"2022-06-16T14:43:22\",\n }\n }\n assert get_workflow_duration(workflow) == 60 + 11\n\n\ndef test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11",
"start_line": 1,
"end_line": 49,
"total_lines": 49,
"is_truncated": false
}Turn 4at 70 s435 tokens out6,314 prompt tokens
I can create a reproduction script that simulates a "stopped" workflow by providing `run_stopped_at` instead of `run_finished_at`. According to the problem description: "Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment." So if `run_finished_at` is None, but `run_stopped_at` is present, it should use `run_stopped_at`. Let's write a reproduction script.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n # Workflow that was started and then stopped\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:00:00\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:05:00\",\n }\n }\n \n # We expect the duration to be 5*60 = 300 seconds\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n \n if duration == 300:\n print(\"SUCCESS: Duration is correctly calculated as the difference between started_at and stopped_at.\")\n else:\n print(f\"FAILURE: Expected 300, got {duration}\")\n\nif __name__ == \"__main__\":\n test_duration_stopped_workflow()\nPY\n"
}Result of run_command 454 characters
{
"status": "ok",
"stdout": "Duration: 139243596\nFAILURE: Expected 300, got 139243596\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 5at 110 s860 tokens out6,932 prompt tokens
The reproduction script failed as expected. The duration returned is the difference between `run_started_at` ("2022-06-16T14:00:00") and the current time (`datetime.utcnow()`), because `run_finished_at` is None.
Now I need to modify `get_workflow_duration` in `reana_client/utils.py` to check for `run_stopped_at` if `run_finished_at` is not present.
Wait, what if both are present? Usually, if it's finished, it might also have been stopped (though unlikely in most flow states). But the problem says "for a stopped workflow", which implies `run_finished_at` is likely None and `run_stopped_at` is set.
Let's check the logic again:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
I should change it to:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, I need to make sure I get `run_stopped_at` from the `progress` dict.
Let's see the current line where `run_finished_at` is retrieved:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
```
I should add `run_stopped_at = progress.get("run_stopped_at")`.
Let's apply this change.
TOOL CALL · edit_file
{
"filepath": "reana_client/utils.py",
"new_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n run_stopped_at = progress.get(\"run_stopped_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())",
"old_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())"
}Result of edit_file 828 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"occurrences": 1,
"strategy": "exact",
"diff": "--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"is_truncated": false
}Turn 6at 120 s287 tokens out8,087 prompt tokens
Now let's run the reproduction script again to verify the fix.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n # Workflow that was started and then stopped\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:00:00\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:05:00\",\n }\n }\n \n # We expect the duration to be 5*60 = 300 seconds\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n \n if duration == 300:\n print(\"SUCCESS: Duration is correctly calculated as the difference between started_at and stopped_at.\")\n else:\n print(f\"FAILURE: Expected 300, got {duration}\")\n\nif __name__ == \"__main__\":\n test_duration_stopped_workflow()\nPY\n"
}Result of run_command 506 characters
{
"status": "ok",
"stdout": "Duration: 300\nSUCCESS: Duration is correctly calculated as the difference between started_at and stopped_at.\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 7at 128 s78 tokens out8,549 prompt tokens
The fix works for the stop case. Now let's make sure we didn't break the existing cases (finished and running). I'll run the tests in `tests/test_utils.py`.
TOOL CALL · run_command
{
"command": "pytest tests/test_utils.py -q --tb=short --no-header"
}Result of run_command 2,957 characters
{
"status": "ok",
"stdout": "... [100%]\n\n---------- coverage: platform linux, python 3.10.19-final-0 ----------\nName Stmts Miss Cover Missing\n---------------------------------------------------------------------------\nreana_client/__init__.py 4 0 100%\nreana_client/api/__init__.py 2 2 0% 9-11\nreana_client/api/client.py 415 415 0% 8-1282\nreana_client/api/utils.py 9 9 0% 8-19\nreana_client/cli/__init__.py 47 47 0% 8-97\nreana_client/cli/cwl_runner.py 159 159 0% 8-265\nreana_client/cli/files.py 306 306 0% 8-649\nreana_client/cli/ping.py 60 60 0% 8-130\nreana_client/cli/quotas.py 41 41 0% 8-116\nreana_client/cli/retention_rules.py 28 28 0% 8-73\nreana_client/cli/secrets.py 73 73 0% 8-160\nreana_client/cli/utils.py 183 183 0% 8-408\nreana_client/cli/workflow.py 579 579 0% 8-1459\nreana_client/config.py 35 0 100%\nreana_client/errors.py 4 0 100%\nreana_client/printer.py 17 13 24% 31-62\nreana_client/utils.py 120 78 35% 30-39, 57-78, 84-89, 94-98, 114-131, 157, 166-185, 194, 206-224, 234-251, 256-257, 262-280\nreana_client/validation/__init__.py 1 0 100%\nreana_client/validation/compute_backends.py 14 7 50% 29-39\nreana_client/validation/environments.py 200 167 16% 42-62, 74-77, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 186-221, 225-244, 249-308, 312-373, 380-395, 399, 407-410, 419-429, 434-462, 471-484, 492-503\nreana_client/validation/parameters.py 31 19 39% 26-37, 42-44, 49, 58, 67, 75-79\nreana_client/validation/utils.py 64 48 25% 38-109, 118-131, 136-144, 151-155\nreana_client/validation/workspace.py 15 8 47% 31-45\nreana_client/version.py 3 0 100%\n---------------------------------------------------------------------------\nTOTAL 2410 2242 7%\nCoverage XML written to file coverage.xml\n\n3 passed in 0.28s\n",
"stderr": "/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 8at 142 s128 tokens out9,784 prompt tokens
The tests in `tests/test_utils.py` passed. One more thing: I should check if there's any other function that calculates duration or if there's a similar pattern elsewhere in the codebase that should be updated. The problem mentioned `reana-client status --include-duration`, and the hint said it also affects `list`. Both of these call `get_workflow_duration`. Searching for other occurrences of `run_stopped_at` in the codebase.
TOOL CALL · run_command
{
"command": "grep -rn \"run_stopped_at\" ."
}Result of run_command 283 characters
{
"status": "ok",
"stdout": "./reana_client/utils.py:149: run_stopped_at = progress.get(\"run_stopped_at\")\n./reana_client/utils.py:156: elif run_stopped_at:\n./reana_client/utils.py:157: end_time = fromisoformat(run_stopped_at)\n",
"stderr": "",
"exit_code": 0
}Turn 9at 150 s58 tokens out10,036 prompt tokens
It seems `run_stopped_at` is only used in `get_workflow_duration` now. I'll double check if there are other duration calculations.
TOOL CALL · run_command
{
"command": "grep -rn \"duration\" ."
}Result of run_command 3,073 characters
{
"status": "ok",
"stdout": "./reana_client/cli/workflow.py:43: get_workflow_duration,\n./reana_client/cli/workflow.py:108: \"progress, duration.\",\n./reana_client/cli/workflow.py:126: \"--include-duration\",\n./reana_client/cli/workflow.py:127: \"include_duration\",\n./reana_client/cli/workflow.py:130: help=\"Include the duration of the workflows in seconds. In case a workflow is in \"\n./reana_client/cli/workflow.py:131: \"progress, its duration as of now will be shown.\",\n./reana_client/cli/workflow.py:172: include_duration: bool,\n./reana_client/cli/workflow.py:225: duration_header = [\"duration\"]\n./reana_client/cli/workflow.py:243: if verbose or include_duration:\n./reana_client/cli/workflow.py:244: headers[type] += duration_header\n./reana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\n./reana_client/cli/workflow.py:688: \"--include-duration\",\n./reana_client/cli/workflow.py:689: \"include_duration\",\n./reana_client/cli/workflow.py:692: help=\"Include the duration of the workflow in seconds. In case the workflow is in \"\n./reana_client/cli/workflow.py:693: \"progress, its duration as of now will be shown.\",\n./reana_client/cli/workflow.py:700: ctx, workflow, _format, output_format, include_duration, access_token, verbose\n./reana_client/cli/workflow.py:794: if verbose or include_duration:\n./reana_client/cli/workflow.py:795: headers += [\"duration\"]\n./reana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\n./reana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\n./reana_client/utils.py:135: \"\"\"Calculate the duration of the workflow.\n./reana_client/utils.py:138: :return: The duration of the workflow in seconds or ``None`` if the starting\n./reana_client/utils.py:151: duration = None\n./reana_client/utils.py:160: duration = round((end_time - start_time).total_seconds())\n./reana_client/utils.py:161: return duration\n./.pytest_cache/v/cache/nodeids:2: \"tests/test_utils.py::test_duration_finished_workflow\",\n./.pytest_cache/v/cache/nodeids:3: \"tests/test_utils.py::test_duration_pending_workflow\",\n./.pytest_cache/v/cache/nodeids:4: \"tests/test_utils.py::test_duration_running_workflow\"\n./CHANGES.rst:37:- Changes ``list`` and ``status`` commands to allow displaying the duration of workflows with the ``--include-duration`` option.\n./tests/test_utils.py:14:from reana_client.utils import get_workflow_duration\n./tests/test_utils.py:17:def test_duration_pending_workflow():\n./tests/test_utils.py:24: assert get_workflow_duration(workflow) is None\n./tests/test_utils.py:27:def test_duration_finished_workflow():\n./tests/test_utils.py:34: assert get_workflow_duration(workflow) == 60 + 11\n./tests/test_utils.py:37:def test_duration_running_workflow():\n./tests/test_utils.py:49: assert get_workflow_duration(workflow) == 60 + 11\n",
"stderr": "",
"exit_code": 0
}Turn 10at 208 s923 tokens out11,166 prompt tokens
Looks like `get_workflow_duration` is the only place where the duration is calculated.
One detail: the problem says "Similarly to what was happening in reanahub/reana-ui#386".
I should make sure I handled the case where `run_finished_at` and `run_stopped_at` both exist. My current code prefers `run_finished_at`.
```python
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
```
This seems correct. If it's finished, use the finished time. If it's stopped but not finished, use the stopped time. If it's still running (neither finished nor stopped), use the current time.
Wait, could a workflow be "stopped" and also have a "finished" time?
According to Reana's API (from general knowledge of Reana, not explicitly in this repo), "finished" usually means the workflow reached a terminal state (succeeded, failed, etc.), while "stopped" means it was manually stopped by the user.
If a workflow was stopped, it's usually considered "finished" with a status of "stopped".
Actually, looking at the issue description:
```console
❯ reana-client status -w recast --include-duration --json | jq '.[0].status'
"stopped"
❯ reana-client status -w recast --include-duration --json | jq '.[0].duration'
2598
```
In this case, `status` is `"stopped"`.
Let's verify if I should add a test case to `tests/test_utils.py` for the stopped workflow, as it is good practice and will prevent regressions.
TOOL CALL · edit_file
{
"filepath": "tests/test_utils.py",
"new_string": "def test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11\n\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:00:00\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:05:00\",\n }\n }\n assert get_workflow_duration(workflow) == 5 * 60\n",
"old_string": "def test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11"
}Result of edit_file 625 characters
{
"status": "ok",
"filepath": "tests/test_utils.py",
"occurrences": 1,
"strategy": "exact",
"diff": "--- a/tests/test_utils.py\n+++ b/tests/test_utils.py\n@@ -47,3 +47,15 @@\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11\n+\n+\n+def test_duration_stopped_workflow():\n+ workflow = {\n+ \"progress\": {\n+ \"run_started_at\": \"2022-06-16T14:00:00\",\n+ \"run_finished_at\": None,\n+ \"run_stopped_at\": \"2022-06-16T14:05:00\",\n+ }\n+ }\n+ assert get_workflow_duration(workflow) == 5 * 60\n+\n",
"is_truncated": false
}Turn 11at 220 s130 tokens out12,352 prompt tokens
Now, I must revert the changes to `tests/` before submitting, but I'll run them once more to be sure. Actually, the rule says: "Every part of your fix MUST reside in non-test production source files." and "the grading harness strips and reverts all changes to tests/". So I should not submit changes to `tests/`. I'll revert them now. But first, let's run the tests to confirm.
TOOL CALL · run_command
{
"command": "pytest tests/test_utils.py -q --tb=short --no-header"
}Result of run_command 2,952 characters
{
"status": "ok",
"stdout": ".... [100%]\n\n---------- coverage: platform linux, python 3.10.19-final-0 ----------\nName Stmts Miss Cover Missing\n---------------------------------------------------------------------------\nreana_client/__init__.py 4 0 100%\nreana_client/api/__init__.py 2 2 0% 9-11\nreana_client/api/client.py 415 415 0% 8-1282\nreana_client/api/utils.py 9 9 0% 8-19\nreana_client/cli/__init__.py 47 47 0% 8-97\nreana_client/cli/cwl_runner.py 159 159 0% 8-265\nreana_client/cli/files.py 306 306 0% 8-649\nreana_client/cli/ping.py 60 60 0% 8-130\nreana_client/cli/quotas.py 41 41 0% 8-116\nreana_client/cli/retention_rules.py 28 28 0% 8-73\nreana_client/cli/secrets.py 73 73 0% 8-160\nreana_client/cli/utils.py 183 183 0% 8-408\nreana_client/cli/workflow.py 579 579 0% 8-1459\nreana_client/config.py 35 0 100%\nreana_client/errors.py 4 0 100%\nreana_client/printer.py 17 13 24% 31-62\nreana_client/utils.py 120 77 36% 30-39, 57-78, 84-89, 94-98, 114-131, 166-185, 194, 206-224, 234-251, 256-257, 262-280\nreana_client/validation/__init__.py 1 0 100%\nreana_client/validation/compute_backends.py 14 7 50% 29-39\nreana_client/validation/environments.py 200 167 16% 42-62, 74-77, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 186-221, 225-244, 249-308, 312-373, 380-395, 399, 407-410, 419-429, 434-462, 471-484, 492-503\nreana_client/validation/parameters.py 31 19 39% 26-37, 42-44, 49, 58, 67, 75-79\nreana_client/validation/utils.py 64 48 25% 38-109, 118-131, 136-144, 151-155\nreana_client/validation/workspace.py 15 8 47% 31-45\nreana_client/version.py 3 0 100%\n---------------------------------------------------------------------------\nTOTAL 2410 2241 7%\nCoverage XML written to file coverage.xml\n\n4 passed in 0.28s\n",
"stderr": "/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 12at 228 s46 tokens out13,635 prompt tokens
All tests passed. Now I will revert the changes to `tests/test_utils.py`.
TOOL CALL · run_command
{
"command": "git checkout -- tests/test_utils.py"
}Result of run_command 60 characters
{
"status": "ok",
"stdout": "",
"stderr": "",
"exit_code": 0
}Turn 13at 234 s37 tokens out13,718 prompt tokens
Now check if there are any other untracked files or modifications.
TOOL CALL · run_command
{
"command": "git status --short && git diff"
}Result of run_command 938 characters
{
"status": "ok",
"stdout": " M reana_client/utils.py\ndiff --git a/reana_client/utils.py b/reana_client/utils.py\nindex b8596bf..c19ac20 100644\n--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"stderr": "",
"exit_code": 0
}Turn 14at 244 s122 tokens out14,104 prompt tokens
The diff looks clean and only affects `reana_client/utils.py`. Final check: - Root cause: `get_workflow_duration` didn't check `run_stopped_at`, defaulting to `utcnow()` when `run_finished_at` was missing. - Fix: Added `run_stopped_at` check in `get_workflow_duration`. - Verification: Reproduction script passed, and existing tests passed. - Cleanliness: No changes to `tests/`, no untracked files.
TOOL CALL · submit_patch
Result of submit_patch 55 characters
{
"status": "ok",
"patch_size": 824,
"files_changed": 1
}Turn 15at 249 s66 tokens out14,266 prompt tokens
The patch has been submitted.
Turn 16at 249 s
Fixed the issue where the duration of stopped workflows was incorrectly calculated as the time from start to the current moment. The `get_workflow_duration` function now correctly considers `run_stopped_at` as the end time when `run_finished_at` is not available.
Model calls (not matched to turns)
Generated tokens 217 tokens · stopped: STOP
The user is reporting a bug where the duration of stopped workflows is calculated incorrectly in `reana-client status --include-duration`. It seems the duration is calculated from the start time to the current time, instead of the start time to the stopped time. The problem description points to `reana_client.utils.get_workflow_duration` as the likely cause, mentioning that it only looks at `run_finished_at` but not `run_stopped_at`. I need to: 1. Locate `reana_client.utils.get_workflow_duration`. 2. Analyze how it calculates duration. 3. Create a reproduction case. 4. Fix the bug by considering `run_stopped_at`. 5. Verify the fix. Let's start by finding the function and the related code.
<|channel>thought
The user is reporting a bug where the duration of stopped workflows is calculated incorrectly in `reana-client status --include-duration`.
It seems the duration is calculated from the start time to the current time, instead of the start time to the stopped time.
The problem description points to `reana_client.utils.get_workflow_duration` as the likely cause, mentioning that it only looks at `run_finished_at` but not `run_stopped_at`.
I need to:
1. Locate `reana_client.utils.get_workflow_duration`.
2. Analyze how it calculates duration.
3. Create a reproduction case.
4. Fix the bug by considering `run_stopped_at`.
5. Verify the fix.
Let's start by finding the function and the related code.<channel|><|tool_call>call:run_command{command:<|"|>grep -rn --include="*.py" "get_workflow_duration" .<|"|>}<tool_call|><|tool_response>
Generated tokens 125 tokens · stopped: STOP
Okay, the function `get_workflow_duration` is defined in `reana_client/utils.py` at line 134. It is used in `reana_client/cli/workflow.py` and tested in `tests/test_utils.py`. Let's read the definition of `get_workflow_duration` in `reana_client/utils.py`.
Okay, the function `get_workflow_duration` is defined in `reana_client/utils.py` at line 134.
It is used in `reana_client/cli/workflow.py` and tested in `tests/test_utils.py`.
Let's read the definition of `get_workflow_duration` in `reana_client/utils.py`.<channel|><|tool_call>call:read_file{filepath:<|"|>reana_client/utils.py<|"|>,start_line:120,end_line:160}<tool_call|><|tool_response>
Generated tokens 269 tokens · stopped: STOP
The implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`.
For a "stopped" workflow, it might have `run_stopped_at` instead of `run_finished_at`.
Let's check `tests/test_utils.py` to see how it's currently tested.
The implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`.
For a "stopped" workflow, it might have `run_stopped_at` instead of `run_finished_at`.
Let's check `tests/test_utils.py` to see how it's currently tested.
<channel|><|tool_call>call:read_file{filepath:<|"|>tests/test_utils.py<|"|>}<tool_call|><|tool_response>
Generated tokens 435 tokens · stopped: STOP
I can create a reproduction script that simulates a "stopped" workflow by providing `run_stopped_at` instead of `run_finished_at`. According to the problem description: "Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment." So if `run_finished_at` is None, but `run_stopped_at` is present, it should use `run_stopped_at`. Let's write a reproduction script.
I can create a reproduction script that simulates a "stopped" workflow by providing `run_stopped_at` instead of `run_finished_at`.
According to the problem description:
"Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
So if `run_finished_at` is None, but `run_stopped_at` is present, it should use `run_stopped_at`.
Let's write a reproduction script.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
# Workflow that was started and then stopped
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:00:00",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:05:00",
}
}
# We expect the duration to be 5*60 = 300 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
if duration == 300:
print("SUCCESS: Duration is correctly calculated as the difference between started_at and stopped_at.")
else:
print(f"FAILURE: Expected 300, got {duration}")
if __name__ == "__main__":
test_duration_stopped_workflow()
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 860 tokens · stopped: STOP
The reproduction script failed as expected. The duration returned is the difference between `run_started_at` ("2022-06-16T14:00:00") and the current time (`datetime.utcnow()`), because `run_finished_at` is None.
Now I need to modify `get_workflow_duration` in `reana_client/utils.py` to check for `run_stopped_at` if `run_finished_at` is not present.
Wait, what if both are present? Usually, if it's finished, it might also have been stopped (though unlikely in most flow states). But the problem says "for a stopped workflow", which implies `run_finished_at` is likely None and `run_stopped_at` is set.
Let's check the logic again:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
I should change it to:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, I need to make sure I get `run_stopped_at` from the `progress` dict.
Let's see the current line where `run_finished_at` is retrieved:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
```
I should add `run_stopped_at = progress.get("run_stopped_at")`.
Let's apply this change.
The reproduction script failed as expected. The duration returned is the difference between `run_started_at` ("2022-06-16T14:00:00") and the current time (`datetime.utcnow()`), because `run_finished_at` is None.
Now I need to modify `get_workflow_duration` in `reana_client/utils.py` to check for `run_stopped_at` if `run_finished_at` is not present.
Wait, what if both are present? Usually, if it's finished, it might also have been stopped (though unlikely in most flow states). But the problem says "for a stopped workflow", which implies `run_finished_at` is likely None and `run_stopped_at` is set.
Let's check the logic again:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
I should change it to:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, I need to make sure I get `run_stopped_at` from the `progress` dict.
Let's see the current line where `run_finished_at` is retrieved:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
```
I should add `run_stopped_at = progress.get("run_stopped_at")`.
Let's apply this change.
<channel|><|tool_call>call:edit_file{filepath:<|"|>reana_client/utils.py<|"|>,new_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())<|"|>,old_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())<|"|>}<tool_call|><|tool_response>
Generated tokens 287 tokens · stopped: STOP
Now let's run the reproduction script again to verify the fix.
Now let's run the reproduction script again to verify the fix.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
# Workflow that was started and then stopped
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:00:00",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:05:00",
}
}
# We expect the duration to be 5*60 = 300 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
if duration == 300:
print("SUCCESS: Duration is correctly calculated as the difference between started_at and stopped_at.")
else:
print(f"FAILURE: Expected 300, got {duration}")
if __name__ == "__main__":
test_duration_stopped_workflow()
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 78 tokens · stopped: STOP
The fix works for the stop case. Now let's make sure we didn't break the existing cases (finished and running). I'll run the tests in `tests/test_utils.py`.
The fix works for the stop case. Now let's make sure we didn't break the existing cases (finished and running).
I'll run the tests in `tests/test_utils.py`.
<channel|><|tool_call>call:run_command{command:<|"|>pytest tests/test_utils.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Generated tokens 128 tokens · stopped: STOP
The tests in `tests/test_utils.py` passed. One more thing: I should check if there's any other function that calculates duration or if there's a similar pattern elsewhere in the codebase that should be updated. The problem mentioned `reana-client status --include-duration`, and the hint said it also affects `list`. Both of these call `get_workflow_duration`. Searching for other occurrences of `run_stopped_at` in the codebase.
The tests in `tests/test_utils.py` passed.
One more thing: I should check if there's any other function that calculates duration or if there's a similar pattern elsewhere in the codebase that should be updated. The problem mentioned `reana-client status --include-duration`, and the hint said it also affects `list`. Both of these call `get_workflow_duration`.
Searching for other occurrences of `run_stopped_at` in the codebase.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn "run_stopped_at" .<|"|>}<tool_call|><|tool_response>
Generated tokens 58 tokens · stopped: STOP
It seems `run_stopped_at` is only used in `get_workflow_duration` now. I'll double check if there are other duration calculations.
It seems `run_stopped_at` is only used in `get_workflow_duration` now.
I'll double check if there are other duration calculations.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn "duration" .<|"|>}<tool_call|><|tool_response>
Generated tokens 923 tokens · stopped: STOP
Looks like `get_workflow_duration` is the only place where the duration is calculated.
One detail: the problem says "Similarly to what was happening in reanahub/reana-ui#386".
I should make sure I handled the case where `run_finished_at` and `run_stopped_at` both exist. My current code prefers `run_finished_at`.
```python
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
```
This seems correct. If it's finished, use the finished time. If it's stopped but not finished, use the stopped time. If it's still running (neither finished nor stopped), use the current time.
Wait, could a workflow be "stopped" and also have a "finished" time?
According to Reana's API (from general knowledge of Reana, not explicitly in this repo), "finished" usually means the workflow reached a terminal state (succeeded, failed, etc.), while "stopped" means it was manually stopped by the user.
If a workflow was stopped, it's usually considered "finished" with a status of "stopped".
Actually, looking at the issue description:
```console
❯ reana-client status -w recast --include-duration --json | jq '.[0].status'
"stopped"
❯ reana-client status -w recast --include-duration --json | jq '.[0].duration'
2598
```
In this case, `status` is `"stopped"`.
Let's verify if I should add a test case to `tests/test_utils.py` for the stopped workflow, as it is good practice and will prevent regressions.
Looks like `get_workflow_duration` is the only place where the duration is calculated.
One detail: the problem says "Similarly to what was happening in reanahub/reana-ui#386".
I should make sure I handled the case where `run_finished_at` and `run_stopped_at` both exist. My current code prefers `run_finished_at`.
```python
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
```
This seems correct. If it's finished, use the finished time. If it's stopped but not finished, use the stopped time. If it's still running (neither finished nor stopped), use the current time.
Wait, could a workflow be "stopped" and also have a "finished" time?
According to Reana's API (from general knowledge of Reana, not explicitly in this repo), "finished" usually means the workflow reached a terminal state (succeeded, failed, etc.), while "stopped" means it was manually stopped by the user.
If a workflow was stopped, it's usually considered "finished" with a status of "stopped".
Actually, looking at the issue description:
```console
❯ reana-client status -w recast --include-duration --json | jq '.[0].status'
"stopped"
❯ reana-client status -w recast --include-duration --json | jq '.[0].duration'
2598
```
In this case, `status` is `"stopped"`.
Let's verify if I should add a test case to `tests/test_utils.py` for the stopped workflow, as it is good practice and will prevent regressions.
<channel|><|tool_call>call:edit_file{filepath:<|"|>tests/test_utils.py<|"|>,new_string:<|"|>def test_duration_running_workflow():
workflow = {
"progress": {
"run_started_at": "2022-07-16T14:42:11",
"run_finished_at": None,
}
}
with patch("reana_client.utils.datetime") as mock_datetime:
mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)
mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(
*args, **kw
)
assert get_workflow_duration(workflow) == 60 + 11
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:00:00",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:05:00",
}
}
assert get_workflow_duration(workflow) == 5 * 60
<|"|>,old_string:<|"|>def test_duration_running_workflow():
workflow = {
"progress": {
"run_started_at": "2022-07-16T14:42:11",
"run_finished_at": None,
}
}
with patch("reana_client.utils.datetime") as mock_datetime:
mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)
mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(
*args, **kw
)
assert get_workflow_duration(workflow) == 60 + 11<|"|>}<tool_call|><|tool_response>
Generated tokens 130 tokens · stopped: STOP
Now, I must revert the changes to `tests/` before submitting, but I'll run them once more to be sure. Actually, the rule says: "Every part of your fix MUST reside in non-test production source files." and "the grading harness strips and reverts all changes to tests/". So I should not submit changes to `tests/`. I'll revert them now. But first, let's run the tests to confirm.
Now, I must revert the changes to `tests/` before submitting, but I'll run them once more to be sure.
Actually, the rule says: "Every part of your fix MUST reside in non-test production source files." and "the grading harness strips and reverts all changes to tests/".
So I should not submit changes to `tests/`. I'll revert them now.
But first, let's run the tests to confirm.
<channel|><|tool_call>call:run_command{command:<|"|>pytest tests/test_utils.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Generated tokens 46 tokens · stopped: STOP
All tests passed. Now I will revert the changes to `tests/test_utils.py`.
All tests passed. Now I will revert the changes to `tests/test_utils.py`.
<channel|><|tool_call>call:run_command{command:<|"|>git checkout -- tests/test_utils.py<|"|>}<tool_call|><|tool_response>
Generated tokens 37 tokens · stopped: STOP
Now check if there are any other untracked files or modifications.
Now check if there are any other untracked files or modifications.
<channel|><|tool_call>call:run_command{command:<|"|>git status --short && git diff<|"|>}<tool_call|><|tool_response>
Generated tokens 122 tokens · stopped: STOP
The diff looks clean and only affects `reana_client/utils.py`. Final check: - Root cause: `get_workflow_duration` didn't check `run_stopped_at`, defaulting to `utcnow()` when `run_finished_at` was missing. - Fix: Added `run_stopped_at` check in `get_workflow_duration`. - Verification: Reproduction script passed, and existing tests passed. - Cleanliness: No changes to `tests/`, no untracked files.
The diff looks clean and only affects `reana_client/utils.py`.
Final check:
- Root cause: `get_workflow_duration` didn't check `run_stopped_at`, defaulting to `utcnow()` when `run_finished_at` was missing.
- Fix: Added `run_stopped_at` check in `get_workflow_duration`.
- Verification: Reproduction script passed, and existing tests passed.
- Cleanliness: No changes to `tests/`, no untracked files.<channel|><|tool_call>call:submit_patch{}<tool_call|><|tool_response>
Patch, tests and logs
Final code change Included
diff --git a/reana_client/utils.py b/reana_client/utils.py
index b8596bf..c19ac20 100644
--- a/reana_client/utils.py
+++ b/reana_client/utils.py
@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
Test output Included
============================= test session starts ============================== collected 139 items tests/test_cli_files.py ................... [ 13%] tests/test_cli_ping.py .... [ 16%] tests/test_cli_retention_rules.py . [ 17%] tests/test_cli_secrets.py ......... [ 23%] tests/test_cli_workflows.py ............................................ [ 55%] ...x.... [ 61%] tests/test_utils.py .... [ 64%] tests/test_validate_compute_backends.py .................... [ 78%] tests/test_validate_environments.py ................ [ 89%] tests/test_validate_parameters.py ........ [ 95%] tests/test_validate_server_capabilities.py ..... [ 99%] tests/test_version.py . [100%] ==================================== PASSES ==================================== _____________ test_create_snakemake_workflow_from_json_parameters ______________ ----------------------------- Captured stdout call ----------------------------- Building DAG of jobs... Job stats: job count ----- ------- foo 1 total 1 ------------------------------ Captured log call ------------------------------- WARNING snakemake.logging:logging.py:580 Building DAG of jobs... WARNING snakemake.logging:logging.py:590 Job stats: job count ----- ------- foo 1 total 1 _________________________ test_validate_parameters_cwl _________________________ ----------------------------- Captured stderr call ----------------------------- /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools - generated xml file: /tmp/rebench-grade-930e73cdbbc54bcb9dd190cfa6314d33.xml -- ---------- coverage: platform linux, python 3.10.19-final-0 ---------- Name Stmts Miss Cover Missing --------------------------------------------------------------------------- reana_client/__init__.py 4 0 100% reana_client/api/__init__.py 2 0 100% reana_client/api/client.py 415 226 46% 57, 63-71, 84-105, 155-170, 190-205, 229-244, 286, 288, 290, 293, 303, 328-343, 367-382, 411-427, 442-469, 507-525, 554, 560-567, 598-613, 629, 631-634, 640-641, 646, 649-650, 655-665, 677, 686-692, 711-726, 738-760, 776-811, 825-850, 869-896, 923-937, 956-970, 995-1010, 1039-1054, 1080, 1096-1098, 1116-1136, 1154-1169, 1190-1205, 1220-1244, 1269-1282 reana_client/api/utils.py 9 0 100% reana_client/cli/__init__.py 47 18 62% 60-77 reana_client/cli/cwl_runner.py 159 159 0% 8-265 reana_client/cli/files.py 306 74 76% 45, 159-168, 221-236, 257, 265-280, 282, 322-328, 336-342, 350-354, 373-374, 404-405, 411-412, 421-438, 440, 490-497, 530-534, 577-584, 643-649 reana_client/cli/ping.py 60 22 63% 25, 67-74, 87, 112-130 reana_client/cli/quotas.py 41 22 46% 30, 72-116 reana_client/cli/retention_rules.py 28 5 82% 29, 64-67 reana_client/cli/secrets.py 73 18 75% 30, 85-91, 113-127, 154-160 reana_client/cli/utils.py 183 52 72% 162, 165-166, 186-190, 193, 197-203, 211-212, 257-258, 288-294, 300-304, 322-328, 340-408 reana_client/cli/workflow.py 579 210 64% 60, 67, 369-370, 388-395, 488-497, 589-668, 718, 726, 731, 749-751, 761-765, 770-773, 800-808, 844-937, 1003-1011, 1013-1020, 1022-1028, 1054-1080, 1207-1235, 1277-1336, 1342, 1412-1421, 1450-1459 reana_client/config.py 35 0 100% reana_client/errors.py 4 0 100% reana_client/printer.py 17 2 88% 41-47 reana_client/utils.py 120 29 76% 31-37, 74, 78, 89, 97, 119-124, 128-131, 166-185, 244-251, 280 reana_client/validation/__init__.py 1 0 100% reana_client/validation/compute_backends.py 14 3 79% 32-38 reana_client/validation/environments.py 200 135 32% 42-62, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 225-244, 249-308, 325, 328-338, 341-363, 380-395, 407-410, 419-429, 434-462, 471-484, 492-503 reana_client/validation/parameters.py 31 0 100% reana_client/validation/utils.py 64 17 73% 39-47, 56, 62-81, 87, 105-109 reana_client/validation/workspace.py 15 0 100% reana_client/version.py 3 0 100% --------------------------------------------------------------------------- TOTAL 2410 992 59% Coverage XML written to file coverage.xml =========================== short test summary info ============================ PASSED tests/test_cli_files.py::test_list_files_server_not_reachable PASSED tests/test_cli_files.py::test_list_files_server_no_token PASSED tests/test_cli_files.py::test_list_files_ok PASSED tests/test_cli_files.py::test_list_files_url PASSED tests/test_cli_files.py::test_download_file PASSED tests/test_cli_files.py::test_download_file_stdout PASSED tests/test_cli_files.py::test_download_multiple_files_stdout PASSED tests/test_cli_files.py::test_upload_file PASSED tests/test_cli_files.py::test_upload_file_respect_gitignore PASSED tests/test_cli_files.py::test_upload_file_skip_empty_git_and_reana_ignore_files PASSED tests/test_cli_files.py::test_upload_file_respect_reanaignore_and_gitignore PASSED tests/test_cli_files.py::test_delete_file PASSED tests/test_cli_files.py::test_delete_non_existing_file PASSED tests/test_cli_files.py::test_move_files PASSED tests/test_cli_files.py::test_list_files_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_valid_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_invalid_filter PASSED tests/test_cli_files.py::test_list_files_filter_with_filename PASSED tests/test_cli_files.py::test_prune_workspace PASSED tests/test_cli_ping.py::test_ping_token_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_reachable PASSED tests/test_cli_ping.py::test_ping_ok PASSED tests/test_cli_retention_rules.py::test_retention_rules_list PASSED tests/test_cli_secrets.py::test_secrets_list_server_not_reachable PASSED tests/test_cli_secrets.py::test_secrets_list_server_no_token PASSED tests/test_cli_secrets.py::test_secrets_list_ok PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reanauser] PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reana=user] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[wrongformat] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[PASS:123] PASSED tests/test_cli_secrets.py::test_secrets_add_already_exist PASSED tests/test_cli_secrets.py::test_secrets_delete PASSED tests/test_cli_workflows.py::test_workflows_server_not_connected PASSED tests/test_cli_workflows.py::test_workflows_no_token PASSED tests/test_cli_workflows.py::test_workflows_server_ok PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options0-expected_status_filter0] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options1-expected_status_filter1] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options2-expected_status_filter2] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options3-expected_status_filter3] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options4-expected_status_filter4] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options5-expected_status_filter5] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options6-expected_status_filter6] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options7-expected_status_filter7] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options8-expected_status_filter8] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ] PASSED tests/test_cli_workflows.py::test_workflows_sessions PASSED tests/test_cli_workflows.py::test_workflows_valid_json PASSED tests/test_cli_workflows.py::test_workflows_include_progress PASSED tests/test_cli_workflows.py::test_workflows_without_include_progress PASSED tests/test_cli_workflows.py::test_workflows_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_without_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_format PASSED tests/test_cli_workflows.py::test_workflows_filter PASSED tests/test_cli_workflows.py::test_workflow_create_failed PASSED tests/test_cli_workflows.py::test_workflow_create_successful PASSED tests/test_cli_workflows.py::test_workflow_create_not_valid_name PASSED tests/test_cli_workflows.py::test_create_workflow_from_json PASSED tests/test_cli_workflows.py::test_create_snakemake_workflow_from_json_parameters PASSED tests/test_cli_workflows.py::test_workflow_start_successful[created-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[pending-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[queued-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[running-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[deleted-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[queued-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[pending-deleted-1] PASSED tests/test_cli_workflows.py::test_workflows_validate PASSED tests/test_cli_workflows.py::test_get_workflow_status_ok PASSED tests/test_cli_workflows.py::test_run PASSED tests/test_cli_workflows.py::test_workflow_input_parameters PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info0-True] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info1-False] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info2-False] PASSED tests/test_cli_workflows.py::test_close_interactive_session PASSED tests/test_cli_workflows.py::test_multiple_specifications PASSED tests/test_cli_workflows.py::test_yml_ext_specification PASSED tests/test_cli_workflows.py::test_run_with_no_inputs PASSED tests/test_utils.py::test_duration_pending_workflow PASSED tests/test_utils.py::test_duration_finished_workflow PASSED tests/test_utils.py::test_duration_stopped_workflow PASSED tests/test_utils.py::test_duration_running_workflow PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:baz-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar-not have an explicit tag-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:master-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar -contains illegal characters-True] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-bar-foo:bar] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo--foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-None-foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-latest-foo:latest] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7] PASSED tests/test_validate_parameters.py::test_validate_parameters_cwl PASSED tests/test_validate_parameters.py::test_validate_parameters_serial PASSED tests/test_validate_parameters.py::test_validate_parameters_yadage PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands0-gendata-] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4] PASSED tests/test_version.py::test_version XFAIL tests/test_cli_workflows.py::test_open_interactive_session[wrong-interactive-type-reana_info3-True] ======================= 138 passed, 1 xfailed in 11.62s ========================
Test errors Included
/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources
Test report (JUnit) Included
<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="1" tests="139" time="11.614" timestamp="2026-11-14T04:49:38.304300" hostname="373f90a57640"><testcase classname="tests.test_cli_files" name="test_list_files_server_not_reachable" time="0.002" /><testcase classname="tests.test_cli_files" name="test_list_files_server_no_token" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_ok" time="0.133" /><testcase classname="tests.test_cli_files" name="test_list_files_url" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file_stdout" time="0.002" /><testcase classname="tests.test_cli_files" name="test_download_multiple_files_stdout" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_gitignore" time="0.002" /><testcase classname="tests.test_cli_files" name="test_upload_file_skip_empty_git_and_reana_ignore_files" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_reanaignore_and_gitignore" time="0.004" /><testcase classname="tests.test_cli_files" name="test_delete_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_delete_non_existing_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_move_files" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_valid_filter" time="0.124" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_invalid_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_files_filter_with_filename" time="0.123" /><testcase classname="tests.test_cli_files" name="test_prune_workspace" time="0.172" /><testcase classname="tests.test_cli_ping" name="test_ping_token_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_reachable" time="0.123" /><testcase classname="tests.test_cli_ping" name="test_ping_ok" time="0.123" /><testcase classname="tests.test_cli_retention_rules" name="test_retention_rules_list" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_not_reachable" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_no_token" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_ok" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reanauser]" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reana=user]" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[wrongformat]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[PASS:123]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_already_exist" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_delete" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_not_connected" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_no_token" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_ok" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options0-expected_status_filter0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options1-expected_status_filter1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options2-expected_status_filter2]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options3-expected_status_filter3]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options4-expected_status_filter4]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options5-expected_status_filter5]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options6-expected_status_filter6]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options7-expected_status_filter7]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options8-expected_status_filter8]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sessions" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_valid_json" time="0.130" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_progress" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_progress" time="0.136" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_workspace_size" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_workspace_size" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_format" time="0.127" /><testcase classname="tests.test_cli_workflows" name="test_workflows_filter" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_failed" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_successful" time="0.129" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_not_valid_name" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_create_workflow_from_json" time="0.129" /><testcase classname="tests.test_cli_workflows" name="test_create_snakemake_workflow_from_json_parameters" time="0.319" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[created-0]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[pending-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[queued-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[running-0]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[finished-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[failed-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[deleted-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[stopped-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-failed-1]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-stopped-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[queued-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[pending-deleted-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_validate" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_get_workflow_status_ok" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_run" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_input_parameters" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info0-True]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info1-False]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info2-False]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[wrong-interactive-type-reana_info3-True]" time="0.124"><skipped type="pytest.xfail" message="" /></testcase><testcase classname="tests.test_cli_workflows" name="test_close_interactive_session" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_multiple_specifications" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_yml_ext_specification" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_run_with_no_inputs" time="0.003" /><testcase classname="tests.test_utils" name="test_duration_pending_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_finished_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_stopped_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_running_workflow" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends0-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends1-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends2-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends3-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[htcondorcern-supported_backends4-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:baz-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar-not have an explicit tag-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:master-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:-has invalid tag-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar -contains illegal characters-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-bar-foo:bar]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo--foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-None-foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-latest-foo:latest]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_cwl" time="3.969" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_serial" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_yadage" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands0-gendata-]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0]" time="0.129" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1]" time="0.121" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2]" time="0.129" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3]" time="0.131" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4]" time="0.131" /><testcase classname="tests.test_version" name="test_version" time="0.000" /></testsuite></testsuites>
Agent log Included
[ 0.0s] 📋 System Prompt: You are a principal Python software engineer resolving a repository issue in `/workspace`.
[ 0.0s] 🎯 Task Prompt: You are evaluating a software engineering task for repository reanahub/reana-client.
[ 13.5s] 💭 (704 chars) "The user is reporting a bug where the duration of stopped workflows is calculated
incorrectly in `reana-client status --..."
[ 13.5s] 🔧 run_command grep -rn --include="*.py" "get_workflow_duration" .
[ 13.6s] → ./reana_client/cli/workflow.py:43: get_workflow_duration,
[ 20.7s] 💭 (257 chars) "Okay, the function `get_workflow_duration` is defined in `reana_client/utils.py` at line
134.
It is used in `reana_clien..."
[ 20.7s] 📖 read_file (reana_client/utils.py)
[ 20.8s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': ' # `workflow_name` was
split, so it is a do…
[ 36.7s] 💭 (821 chars) "The implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:..."
[ 36.7s] 📖 read_file (tests/test_utils.py)
[ 36.7s] ✓ {'status': 'ok', 'filepath': 'tests/test_utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This file
is part of REANA…
[ 69.4s] 💭 (656 chars) "I can create a reproduction script that simulates a "stopped" workflow by providing
`run_stopped_at` instead of `run_fin..."
[ 69.4s] 🔧 run_command (26 lines) python3 - <<'PY'
[ 70.1s] → Duration: 139243596
[ 109.9s] 💭 (1720 chars) "The reproduction script failed as expected. The duration returned is the difference between
`run_started_at` ("2022-06-1..."
[ 109.9s] ✏️ edit_file (reana_client/utils.py)
[ 110.1s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'occurrences': 1, 'strategy': 'exact', 'diff':
'--- a/reana_client…
[ 119.4s] 💭 (62 chars) "Now let's run the reproduction script again to verify the fix."
[ 119.4s] 🔧 run_command (26 lines) python3 - <<'PY'
[ 119.6s] → Duration: 300
[ 127.7s] 💭 (157 chars) "The fix works for the stop case. Now let's make sure we didn't break the existing cases
(finished and running).
I'll ru..."
[ 127.7s] 🔧 run_command pytest tests/test_utils.py -q --tb=short --no-header
[ 129.6s] → ... [100%]
[ 141.7s] 💭 (431 chars) "The tests in `tests/test_utils.py` passed.
One more thing: I should check if there's any other function that calculates..."
[ 141.7s] 🔧 run_command grep -rn "run_stopped_at" .
[ 141.7s] → ./reana_client/utils.py:149: run_stopped_at = progress.get("run_stopped_at")
[ 149.3s] 💭 (131 chars) "It seems `run_stopped_at` is only used in `get_workflow_duration` now.
I'll double check if there are other duration ca..."
[ 149.3s] 🔧 run_command grep -rn "duration" .
[ 149.4s] → ./reana_client/cli/workflow.py:43: get_workflow_duration,
[ 207.7s] 💭 (1556 chars) "Looks like `get_workflow_duration` is the only place where the duration is calculated.
One detail: the problem says "Si..."
[ 207.7s] ✏️ edit_file (tests/test_utils.py)
[ 207.9s] ✓ {'status': 'ok', 'filepath': 'tests/test_utils.py', 'occurrences': 1, 'strategy': 'exact', 'diff': '---
a/tests/test_uti…
[ 219.4s] 💭 (379 chars) "Now, I must revert the changes to `tests/` before submitting, but I'll run them once more to
be sure.
Actually, the rul..."
[ 219.4s] 🔧 run_command pytest tests/test_utils.py -q --tb=short --no-header
[ 220.3s] → .... [100%]
[ 227.9s] 💭 (73 chars) "All tests passed. Now I will revert the changes to `tests/test_utils.py`."
[ 227.9s] 🔧 run_command git checkout -- tests/test_utils.py
[ 227.9s] 🔧
[ 233.8s] 💭 (66 chars) "Now check if there are any other untracked files or modifications."
[ 233.8s] 🔧 run_command git status --short && git diff
[ 233.8s] → M reana_client/utils.py
[ 243.7s] 💭 (400 chars) "The diff looks clean and only affects `reana_client/utils.py`.
Final check:
- Root cause: `get_workflow_duration` didn'..."
[ 243.7s] 🤖 submit_patch
[ 243.8s] → submit_patch: {"status": "ok", "patch_size": 824, "files_changed": 1}
[ 248.4s] 💭 (29 chars) "The patch has been submitted."
[ 248.4s] ✅ Agent finished: Fixed the issue where the duration of stopped workflows was incorrectly calculated as the
time from start to the current moment. The `get_workflow_duration` function now correctly considers `run_stopp...
Native result row
{
"agent_error": null,
"duration_seconds": 265.46,
"error": null,
"grade": {
"collected_tests": 139,
"competition_junit_ok": true,
"error": null,
"required_issues_count": 0,
"resolved": true,
"status_counts": {
"PASSED": 138,
"SKIPPED": 1
},
"strict_clean_patch": true,
"test_exit_code": 0
},
"instance_id": "reanahub__reana-client-701",
"pass_idx": 0,
"patch_chars": 824,
"phase1_seconds": 251.09,
"repo": "reanahub/reana-client",
"request_log_path": "/kaggle-root/working/r31/rollouts_X/requests/reanahub__reana-client-701__p0__r2.jsonl",
"resolved": true,
"rollout_idx": 2,
"run_key": "reanahub__reana-client-701__p0__r2",
"strict_clean_patch": true,
"tool_calls": 13,
"total_llm_calls": 15,
"trace_path": "/kaggle-root/working/r31/rollouts_X/traces/trace_reanahub__reana-client-701__p0__r2.json"
}