ROLLOUT 4 · reanahub/reana-client
reanahub__reana-client-701
Solved
308 stotal time
10tool calls
12model calls
4,320tokens generated
111,543prompt tokens read
No error recorded
⚠ The request log has 11 model calls but the trace has 13 agent calls, so tokens are listed separately instead of beside each turn.
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System instructions 4,822 characters
You are a principal Python software engineer resolving a repository issue in `/workspace`. Your sole objective is to produce a minimal, root-cause source patch that passes every hidden fail-to-pass and pass-to-pass regression test on the first grading run. ## Critical Environment & Grader Rules 1. **Air-Gapped Sandbox & Available CLI Tools**: No network access. Never run `pip`, `uv`, `conda`, or `git fetch`. Note: `rg` (`ripgrep`) is NOT installed in the container — always use `grep -rn --include="*.py"` for fast exact searches so you never waste a tool call on `command not found`. 2. **Protected Grading Paths**: Before running official verification, the grading harness **strips and reverts all changes** to `tests/`, `test/`, `testing/`, `test_*.py`, `*_test.py`, `conftest.py`, `pyproject.toml`, `setup.cfg`, `pytest.ini`, and `tox.ini`. Every part of your fix MUST reside in non-test production source files. 3. **Untracked File Trap (`git add -N .`)**: `submit_patch` stages ALL untracked files inside `/workspace`! Never leave reproduction or scratch files inside `/workspace` — run reproductions inline via `python3 - <<'PY'` or inside `/tmp/repro.py` in a single `run_command`. 4. **Stdout Truncation Rule**: `run_command` truncates stdout after the first 5,000 characters from the TOP. Always run pytest quietly with short tracebacks: `pytest path/to/test_file.py -k pattern -q --tb=short --no-header` If a test file is large, redirect output to `/tmp/pytest.log` and inspect `tail -n 80 /tmp/pytest.log` so failure tracebacks at the bottom are never cut off. 5. **Strict Pacing Discipline**: `get_status` and `submit_patch` are free and do NOT count toward `max_tool_calls`. Target **16-22 counted tool calls total**, and **begin your first `edit_file` change no later than tool call 15**. Reserve at least 4 calls for verification, `git status --short && git diff`, and submission. ## Execution Protocol ### Phase 1 — Pinpoint Code & Tests Immediately (1-2 tool calls) - The user message already contains `Workspace Layout` — do NOT waste a turn running `ls` on top-level directories. - Run a single compound `run_command` with `grep -rn --include="*.py"` to locate: (a) the exact symbols, error strings, or functions from the problem description, (b) **all parallel or sibling implementations** (for example sync + async variants, `Client` + `AsyncClient`, serializer + deserializer, multiple backends/dialects, base + subclass methods, `__init__.py` / `__all__` exports), and (c) the closest existing unit test files under `tests/`. ### Phase 2 — Deep Read & Spec Anchor (2-5 tool calls) - Use `read_file` with generous `start_line` and `end_line` windows (180-300 lines per call so you read whole modules in fewer calls) on the target function/class, callers, type annotations, and neighboring tests. - Before editing, verify every explicit and implicit requirement from the issue: exact parameter names, defaults, boundary/domain edge cases, exception types/messages, `None` vs empty collection vs falsy (`0`, `False`, `""`) semantics, mutability/copying, and return types. ### Phase 3 — Reproduce Bug in One Call (1 tool call) - Run ONE concise command (`python3 - <<'PY' ... PY` or targeted `pytest ... -q --tb=short --no-header`) via `run_command` to observe the exact pre-fix failure. Do NOT spend multiple tool calls writing separate reproduction scripts. ### Phase 4 — Surgical Implementation Across All Parallel Paths (1-4 tool calls) - Begin editing by tool call 15! Use `edit_file` with 4-6 lines of exact surrounding context copied from `read_file`. - Update ALL parallel codepaths (sync/async, multiple classes/dialects, type hints) consistently so partial fixes do not fail sibling tests. - **2-Strike Edit Rule**: If `edit_file` fails twice on the same block due to whitespace or escaping, do not retry `edit_file` a third time — apply an atomic Python transformation via `run_command` and immediately verify `python3 -m py_compile path/to/file.py`. ### Phase 5 — Edge-Case Verification, Diff Hygiene & Clean Exit (2-4 tool calls) - Run a single compound `run_command` testing both your reproduction + boundary edge cases (`None`, empty input, leading/trailing delimiters, subdomain/prefix boundaries, subclass/async parity) AND the relevant existing `pytest` module(s) with `-q --tb=short --no-header`. - Run `git status --short && git diff` via `run_command`. Confirm: - ZERO untracked (`??`) files in `/workspace` (`rm -f` any untracked workspace files immediately), - ZERO modifications to `tests/` or protected config files (`git checkout -- tests/` if touched), - Minimal, clean diff with valid imports and indentation. - Call `submit_patch` once verification passes, then respond with a brief 2-sentence plain-text summary and make NO further tool calls.
Task prompt 6,896 characters
You are evaluating a software engineering task for repository reanahub/reana-client. Problem Statement: cli: duration of stopped workflows is not displayed correctly Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment. ```console ❯ reana-client status -w recast --include-duration --json | jq '.[0].status' "stopped" ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2598 # After a few seconds... ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2604 ``` This is very likely because in [`reana_client.utils.get_workflow_duration`](https://github.com/reanahub/reana-client/blob/5b278f131b59d3ecfd3c7f129040a126cd01b60a/reana_client/utils.py#L134) we only look at `run_finished_at`, but not at `run_stopped_at`. ## Hints: codecov[bot]: ## [Codecov](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) Report All modified and coverable lines are covered by tests :white_check_mark: > Comparison is base [(`fa5b7c7`)](https://app.codecov.io/gh/reanahub/reana-client/commit/fa5b7c76eb25bfb1591e6fae4a142d975e14b937?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.57% compared to head [(`d3925f2`)](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.62%. <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) ```diff @@ Coverage Diff @@ ## master #701 +/- ## ========================================== + Coverage 58.57% 58.62% +0.05% ========================================== Files 24 24 Lines 2390 2393 +3 ========================================== + Hits 1400 1403 +3 Misses 990 990 ``` | [Files](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) | Coverage Δ | | |---|---|---| | [reana\_client/api/client.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L2FwaS9jbGllbnQucHk=) | `45.54% <100.00%> (ø)` | | | [reana\_client/utils.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3V0aWxzLnB5) | `76.47% <100.00%> (+0.60%)` | :arrow_up: | | [reana\_client/validation/environments.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3ZhbGlkYXRpb24vZW52aXJvbm1lbnRzLnB5) | `32.50% <ø> (ø)` | | </details> giuseppe-steduto: Note for the reviewer: I chose `status` as the scope of the commit because I think that the commands affected by the PR are a nice user-facing scope for changes to the client. For example, this PR fixes `status`, `list`, and in general the commands that use the `--include-duration` flag, I chose `status` as it is the one most evidently impacted. WDYT? mdonadoni: Regarding the scope, I think `fix(status)` can be a good choice. WDYT @tiborsimko ? ## Task Budget (Session terminates when any budget is exhausted) - Time allowance: 7.5 minutes - Tool calls allowance: 30 calls - Max loop iterations: 40 turns ## Execution Environment Rules - Single command timeout: 90 seconds (commands exceeding this fail without ending the session) - Command output limit: 5000 characters - File view limit: 150 lines per read_file call - File character limit: 10000 characters per read_file call - Environment is offline (no network/PyPI access). All repository and test dependencies are ALREADY pre-installed. Do NOT attempt to run pip install or download packages. ## Instructions: 0. All source code is under `/workspace`. Do NOT search outside `/workspace` (e.g. `/usr/`, `/wheels/`, system site-packages). If imports fail, the issue is in the source code under `/workspace`, not in missing system packages. 1. Analyze the problem statement and any provided hints carefully to identify all requested script paths, CLI subcommands, or Python modules. 2. Inspect existing codebase conventions and test files before making edits. 3. Verify your implementation using targeted tests or inline assertions before submitting. 4. Call submit_patch only after your implementation is complete and verified. 5. As your final action, you must return a text-only response reporting your completion to terminate the session. ## Workspace Layout The repository is located at `/workspace`. Here is the directory tree (up to 3 levels): ``` ./AUTHORS.rst ./CHANGELOG.md ./CHANGES.rst ./CONTRIBUTING.rst ./LICENSE ./MANIFEST.in ./README.rst ./docs ./pytest.ini ./reana_client ./reana_client/__init__.py ./reana_client/api ./reana_client/api/__init__.py ./reana_client/api/client.py ./reana_client/api/utils.py ./reana_client/cli ./reana_client/cli/__init__.py ./reana_client/cli/cwl_runner.py ./reana_client/cli/files.py ./reana_client/cli/ping.py ./reana_client/cli/quotas.py ./reana_client/cli/retention_rules.py ./reana_client/cli/secrets.py ./reana_client/cli/utils.py ./reana_client/cli/workflow.py ./reana_client/config.py ./reana_client/errors.py ./reana_client/printer.py ./reana_client/utils.py ./reana_client/validation ./reana_client/validation/__init__.py ./reana_client/validation/compute_backends.py ./reana_client/validation/environments.py ./reana_client/validation/parameters.py ./reana_client/validation/utils.py ./reana_client/validation/workspace.py ./reana_client/version.py ./requirements-dev.txt ./run-tests.sh ./scripts ./scripts/create-appimage.sh ./scripts/generate_cli_api.py ./setup.cfg ./setup.py ./tests ./tox.ini ```
Turn 1at 13 s208 tokens out4,359 prompt tokens
The user is reporting a bug in `reana-client` where the duration of stopped workflows is incorrectly calculated. It seems that `reana_client.utils.get_workflow_duration` only considers `run_finished_at` and doesn't account for `run_stopped_at`. When a workflow is stopped, the duration should be the time between `run_started_at` and `run_stopped_at`. If it's not stopped but finished, it should be between `run_started_at` and `run_finished_at`. If it's still running, it's likely the time from `run_started_at` until now. Let's start by locating the `get_workflow_duration` function in `reana_client/utils.py`.
TOOL CALL · run_command
{
"command": "grep -rn --include=\"*.py\" \"get_workflow_duration\" ."
}Result of run_command 748 characters
{
"status": "ok",
"stdout": "./reana_client/cli/workflow.py:43: get_workflow_duration,\n./reana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\n./reana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\n./reana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\n./tests/test_utils.py:14:from reana_client.utils import get_workflow_duration\n./tests/test_utils.py:24: assert get_workflow_duration(workflow) is None\n./tests/test_utils.py:34: assert get_workflow_duration(workflow) == 60 + 11\n./tests/test_utils.py:49: assert get_workflow_duration(workflow) == 60 + 11\n",
"stderr": "",
"exit_code": 0
}Turn 2at 18 s79 tokens out4,848 prompt tokens
Okay, the function is located at `reana_client/utils.py:134`. Let's examine the implementation of `get_workflow_duration` in `reana_client/utils.py`.
TOOL CALL · read_file
{
"filepath": "reana_client/utils.py",
"start_line": 134
}Result of read_file 5,201 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": "def get_workflow_duration(workflow: Dict) -> Optional[int]:\n \"\"\"Calculate the duration of the workflow.\n\n :param workflow: Workflow details returned by the server.\n :return: The duration of the workflow in seconds or ``None`` if the starting\n time is not present.\n \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n\ndef get_workflow_root():\n \"\"\"Return the current workflow root directory.\"\"\"\n reana_yaml = get_reana_yaml_file_path()\n workflow_root = os.getcwd()\n while True:\n file_list = os.listdir(workflow_root)\n parent_dir = os.path.dirname(workflow_root)\n if reana_yaml in file_list:\n break\n else:\n if workflow_root == parent_dir:\n display_message(\n \"Not a workflow directory (or any of the parent directories).\\n\"\n \"Please upload from inside the directory containing \"\n \"the reana.yaml file of your workflow.\",\n msg_type=\"error\",\n )\n sys.exit(1)\n else:\n workflow_root = parent_dir\n workflow_root += \"/\"\n return workflow_root\n\n\ndef get_workflow_status_change_msg(workflow, status):\n \"\"\"Choose verb conjugation depending on status.\n\n :param workflow: Workflow name whose status changed.\n :param status: String which represents the status the workflow changed to.\n \"\"\"\n return \"{workflow} {verb} {status}\".format(\n workflow=workflow, verb=get_workflow_status_change_verb(status), status=status\n )\n\n\ndef parse_secret_from_literal(literal):\n \"\"\"Parse a literal string, into a secret dict.\n\n :param literal: String containg a key and a value. (e.g. 'KEY=VALUE')\n :returns secret: Dictionary in the format suitable for sending\n via http request.\n \"\"\"\n try:\n key, value = literal.split(\"=\", 1)\n secret = {\n key: {\n \"value\": base64.b64encode(value.encode(\"utf-8\")).decode(\"utf-8\"),\n \"type\": \"env\",\n }\n }\n return secret\n\n except ValueError as e:\n logging.debug(traceback.format_exc())\n logging.debug(str(e))\n display_message(\n 'Option \"{0}\" is invalid: \\n'\n 'For literal strings use \"SECRET_NAME=VALUE\" format'.format(literal),\n msg_type=\"error\",\n )\n sys.exit(1)\n\n\ndef parse_secret_from_path(path):\n \"\"\"Parse a file path into a secret dict.\n\n :param path: Path of the file containing secret\n :returns secret: Dictionary in the format suitable for sending\n via http request.\n \"\"\"\n try:\n with open(os.path.expanduser(path), \"rb\") as file:\n file_name = os.path.basename(path)\n secret = {\n file_name: {\n \"value\": base64.b64encode(file.read()).decode(\"utf-8\"),\n \"type\": \"file\",\n }\n }\n return secret\n except FileNotFoundError as e:\n logging.debug(traceback.format_exc())\n logging.debug(str(e))\n display_message(\n \"File {0} could not be uploaded: {0} does not exist.\".format(path),\n msg_type=\"error\",\n )\n sys.exit(1)\n\n\ndef get_api_url():\n \"\"\"Obtain REANA server API URL.\"\"\"\n server_url = os.getenv(\"REANA_SERVER_URL\")\n return server_url.strip(\" \\t\\n\\r/\") if server_url else None\n\n\ndef get_reana_yaml_file_path():\n \"\"\"REANA specification file location.\"\"\"\n matches = [path for path in reana_yaml_valid_file_names if os.path.exists(path)]\n if len(matches) == 0:\n display_message(\n \"No REANA specification file (reana.yaml) found. Exiting.\",\n msg_type=\"error\",\n )\n sys.exit(1)\n if len(matches) > 1:\n display_message(\n \"Found {0} REANA specification files ({1}). \"\n \"Please use only one. Exiting.\".format(len(matches), \", \".join(matches)),\n msg_type=\"error\",\n )\n sys.exit(1)\n for path in reana_yaml_valid_file_names:\n if os.path.exists(path):\n return path\n # If none of the valid paths exists, fall back to reana.yaml.\n return \"reana.yaml\"",
"start_line": 134,
"end_line": 277,
"total_lines": 277,
"is_truncated": false
}Turn 3at 44 s360 tokens out6,454 prompt tokens
The current implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
As suggested in the problem description, it's missing `run_stopped_at`.
If a workflow is stopped, `run_stopped_at` will be present, and that should be used as the `end_time` if it's more appropriate than `run_finished_at` or `datetime.utcnow()`.
Wait, if a workflow is "stopped", it might not have `run_finished_at` but it should have `run_stopped_at`.
If it has both, which one should be used? Usually, "finished" means it completed (success or failure), while "stopped" means it was manually stopped.
Let's check `tests/test_utils.py` to see how it's currently tested.
TOOL CALL · read_file
{
"filepath": "tests/test_utils.py"
}Result of read_file 1,574 characters
{
"status": "ok",
"filepath": "tests/test_utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\n\"\"\"REANA client utils tests.\"\"\"\n\nfrom unittest.mock import patch\nfrom datetime import datetime\n\nfrom reana_client.utils import get_workflow_duration\n\n\ndef test_duration_pending_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": None,\n \"run_finished_at\": None,\n }\n }\n assert get_workflow_duration(workflow) is None\n\n\ndef test_duration_finished_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": \"2022-06-16T14:43:22\",\n }\n }\n assert get_workflow_duration(workflow) == 60 + 11\n\n\ndef test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11",
"start_line": 1,
"end_line": 49,
"total_lines": 49,
"is_truncated": false
}Turn 4at 87 s620 tokens out7,369 prompt tokens
I can create a reproduction test case for a stopped workflow. A stopped workflow will have `run_started_at` and `run_stopped_at`, but `run_finished_at` will be `None`. Current behavior: If `run_finished_at` is `None`, it uses `datetime.utcnow()`. This is why the duration increases as time passes for a stopped workflow. Correct behavior: If `run_stopped_at` is present, it should be used as `end_time` if `run_finished_at` is not present (or maybe even if it is, but usually "stopped" happens before "finished" if "finished" means successful completion of all steps). Actually, if it's stopped, it's finished. Let's refine the logic: 1. `run_started_at` is required. 2. If `run_finished_at` is present, use it as `end_time`. 3. Else if `run_stopped_at` is present, use it as `end_time`. 4. Else (it's still running), use `datetime.utcnow()` as `end_time`. Wait, if it's stopped, does it also have `run_finished_at`? The problem description says: "when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment." This implies that for a stopped workflow, `run_finished_at` is likely `None` (or not what we want) and `run_stopped_at` is the correct end time. Let's verify this by adding a test case.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:43:22\",\n }\n }\n # Expected duration: 60 + 11 = 71 seconds\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n # If the bug is present, duration will be something much larger (now - 2022-06-16)\n # unless we mock datetime.utcnow()\n\nPY\n"
}Result of run_command 395 characters
{
"status": "ok",
"stdout": "",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 5at 99 s177 tokens out8,136 prompt tokens
Wait, why was stdout empty? Ah, I forgot to actually print it? No, I have `print(f"Duration: {duration}")`.
Wait, maybe `get_workflow_duration` failed or there was an issue?
Actually, looking at `reana_client/utils.py`, `get_workflow_duration` uses `datetime`.
Wait, `from datetime import datetime` is inside `get_workflow_duration`'s `fromisoformat` definition, but is `datetime` imported at the top of `reana_client/utils.py`?
Let me check the top of `reana_client/utils.py`.
TOOL CALL · read_file
{
"end_line": 50,
"filepath": "reana_client/utils.py",
"start_line": 1
}Result of read_file 1,620 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2017, 2018, 2019, 2020, 2021, 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\"\"\"REANA client utils.\"\"\"\n\nimport base64\nfrom datetime import datetime\nimport logging\nimport os\nimport pathlib\nimport sys\nimport traceback\nfrom typing import Dict, Optional\nfrom uuid import UUID\n\nfrom reana_commons.utils import get_workflow_status_change_verb\nfrom reana_commons.specification import load_reana_spec\n\nfrom reana_client.config import reana_yaml_valid_file_names\nfrom reana_client.printer import display_message\nfrom reana_client.validation.utils import validate_reana_spec\n\n\ndef workflow_uuid_or_name(ctx, param, value):\n \"\"\"Get UUID of workflow from configuration / cache file based on name.\"\"\"\n if not value:\n display_message(\n \"Workflow name must be provided either with \"\n \"`--workflow` option or with REANA_WORKON \"\n \"environment variable\",\n msg_type=\"error\",\n )\n sys.exit(1)\n else:\n return value\n\n\ndef load_validate_reana_spec(\n filepath,\n access_token=None,\n skip_validation=False,\n skip_validate_environments=True,\n pull_environment_image=False,\n server_capabilities=False,\n):\n \"\"\"Load and validate reana specification file.",
"start_line": 1,
"end_line": 50,
"total_lines": 277,
"is_truncated": false
}Turn 6at 123 s500 tokens out8,830 prompt tokens
Yes, `datetime` is imported.
Wait, why did the output of the previous `run_command` have empty stdout?
Maybe because `datetime.utcnow()` is being called and it's taking a long time? No.
Wait, I see. I ran:
```python
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Expected duration: 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# If the bug is present, duration will be something much larger (now - 2022-06-16)
# unless we mock datetime.utcnow()
test_duration_stopped_workflow()
```
BUT I DID NOT CALL `test_duration_stopped_workflow()` at the end of the script!
My bad. Let me run it again and actually call the function.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:43:22\",\n }\n }\n # Expected duration: 60 + 11 = 71 seconds\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n\ntest_duration_stopped_workflow()\nPY\n"
}Result of run_command 416 characters
{
"status": "ok",
"stdout": "Duration: 139241131\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 7at 189 s1,089 tokens out9,492 prompt tokens
The duration is `139241131` seconds, which is indeed the time since June 2022 until now.
So the bug is reproduced.
Now let's fix `get_workflow_duration` in `reana_client/utils.py`.
I will update it to:
1. Get `run_started_at`, `run_finished_at`, and `run_stopped_at`.
2. If `run_started_at` is absent, return `None`.
3. If `run_finished_at` is present, use it as `end_time`.
4. Else if `run_stopped_at` is present, use it as `end_time`.
5. Else use `datetime.utcnow()`.
Wait, if it's stopped, can it also have `run_finished_at`?
Looking at the bug report, "the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
This suggests that for a stopped workflow, `run_finished_at` is likely not set.
Let's check the priority.
If both `run_finished_at` and `run_stopped_at` are present, which one should take precedence?
Usually, `run_finished_at` would be when it actually finished (successfully or with an error). `run_stopped_at` would be when it was stopped.
If it was stopped, it's effectively finished.
Actually, many systems set `run_finished_at` when the workflow reaches a terminal state, whether it was stopped or completed naturally.
However, the bug report explicitly mentions that for a "stopped workflow", the duration is incorrect.
Let's look at the original code:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
I should change it to:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, I need to make sure I get `run_stopped_at` from `progress`.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at") # Add this
```
Let's apply the fix.
TOOL CALL · edit_file
{
"filepath": "reana_client/utils.py",
"new_string": " progress = workflow.get(\\\"progress\\\", {})\\n run_started_at = progress.get(\\\"run_started_at\\\")\\n run_finished_at = progress.get(\\\"run_finished_at\\\")\\n run_stopped_at = progress.get(\\\"run_stopped_at\\\")\\n\\n duration = None\\n if run_started_at:\\n start_time = fromisoformat(run_started_at)\\n if run_finished_at:\\n end_time = fromisoformat(run_finished_at)\\n elif run_stopped_at:\\n end_time = fromisoformat(run_stopped_at)\\n else:\\n end_time = datetime.utcnow()\\n duration = round((end_time - start_time).total_seconds())\\n return duration",
"old_string": " progress = workflow.get(\\\"progress\\\", {})\\n run_started_at = progress.get(\\\"run_started_at\\\")\\n run_finished_at = progress.get(\\\"run_finished_at\\\")\\n\\n duration = None\\n if run_started_at:\\n start_time = fromisoformat(run_started_at)\\n if run_finished_at:\\n end_time = fromisoformat(run_finished_at)\\n else:\\n end_time = datetime.utcnow()\\n duration = round((end_time - start_time).total_seconds())\\n return duration"
}Result of edit_file 832 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"occurrences": 1,
"strategy": "unescaped",
"diff": "--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"is_truncated": false
}Turn 8at 199 s219 tokens out10,878 prompt tokens
Now let's verify the fix with the reproduction script.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:43:22\",\n }\n }\n # Expected duration: 60 + 11 = 71 seconds\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n assert duration == 71\n\ntest_duration_stopped_workflow()\nprint(\"Test passed!\")\nPY\n"
}Result of run_command 423 characters
{
"status": "ok",
"stdout": "Duration: 71\nTest passed!\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 9at 206 s62 tokens out11,256 prompt tokens
The reproduction test passed. Now I should also check if it didn't break existing tests in `tests/test_utils.py`.
TOOL CALL · run_command
{
"command": "pytest tests/test_utils.py -q --tb=short --no-header"
}Result of run_command 2,957 characters
{
"status": "ok",
"stdout": "... [100%]\n\n---------- coverage: platform linux, python 3.10.19-final-0 ----------\nName Stmts Miss Cover Missing\n---------------------------------------------------------------------------\nreana_client/__init__.py 4 0 100%\nreana_client/api/__init__.py 2 2 0% 9-11\nreana_client/api/client.py 415 415 0% 8-1282\nreana_client/api/utils.py 9 9 0% 8-19\nreana_client/cli/__init__.py 47 47 0% 8-97\nreana_client/cli/cwl_runner.py 159 159 0% 8-265\nreana_client/cli/files.py 306 306 0% 8-649\nreana_client/cli/ping.py 60 60 0% 8-130\nreana_client/cli/quotas.py 41 41 0% 8-116\nreana_client/cli/retention_rules.py 28 28 0% 8-73\nreana_client/cli/secrets.py 73 73 0% 8-160\nreana_client/cli/utils.py 183 183 0% 8-408\nreana_client/cli/workflow.py 579 579 0% 8-1459\nreana_client/config.py 35 0 100%\nreana_client/errors.py 4 0 100%\nreana_client/printer.py 17 13 24% 31-62\nreana_client/utils.py 120 78 35% 30-39, 57-78, 84-89, 94-98, 114-131, 157, 166-185, 194, 206-224, 234-251, 256-257, 262-280\nreana_client/validation/__init__.py 1 0 100%\nreana_client/validation/compute_backends.py 14 7 50% 29-39\nreana_client/validation/environments.py 200 167 16% 42-62, 74-77, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 186-221, 225-244, 249-308, 312-373, 380-395, 399, 407-410, 419-429, 434-462, 471-484, 492-503\nreana_client/validation/parameters.py 31 19 39% 26-37, 42-44, 49, 58, 67, 75-79\nreana_client/validation/utils.py 64 48 25% 38-109, 118-131, 136-144, 151-155\nreana_client/validation/workspace.py 15 8 47% 31-45\nreana_client/version.py 3 0 100%\n---------------------------------------------------------------------------\nTOTAL 2410 2242 7%\nCoverage XML written to file coverage.xml\n\n3 passed in 0.29s\n",
"stderr": "/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 10at 279 s858 tokens out12,475 prompt tokens
The tests in `tests/test_utils.py` passed.
I should also double check if I need to handle any other "stopped" scenarios or if there's any other place where workflow duration is calculated.
I already grepped for `get_workflow_duration` and it seemed to be only used in `reana_client/cli/workflow.py` and `reana_client/utils.py`.
Let's review the code again.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If it's stopped, `run_finished_at` might be `None`, and `run_stopped_at` might be set. In that case, we use `run_stopped_at`.
If it's finished, `run_finished_at` is set and used.
If it's running, neither is set (or only `run_started_at` is set), and we use `utcnow()`.
This seems correct according to the problem statement.
Wait, what if both `run_finished_at` and `run_stopped_at` are set?
If `run_finished_at` is set, it's the final time the workflow reached a terminal state.
If a workflow was stopped, does it also set `run_finished_at`?
Usually, yes. But if the user says "stopped workflows", and they see the duration increasing, it means `run_finished_at` is NOT coming back for them.
If both are set, `run_finished_at` will take precedence. Is that correct?
Usually "finished" is the most accurate "end" time.
Let's check if there are any other fields in `progress` that could be used.
The code I wrote uses `run_stopped_at`.
One more thing: I should ensure that `run_stopped_at` is handled correctly if it's an empty string or something.
`progress.get("run_stopped_at")` will return `None` if the key is missing.
If it's an empty string, `fromisoformat("")` will fail.
But looking at the existing code, `run_finished_at` was used directly in `if run_finished_at:`.
So `if run_stopped_at:` will also handle `None` and `""` correctly.
Let's check if `run_stopped_at` can be `None` but the workflow is stopped.
The bug report says: "in `reana_client.utils.get_workflow_duration` we only look at `run_finished_at`, but not at `run_stopped_at`."
This strongly suggests that `run_stopped_at` is the field to use.
Final check on `git status` and `git diff`.
TOOL CALL · run_command
{
"command": "git status --short && git diff"
}Result of run_command 938 characters
{
"status": "ok",
"stdout": " M reana_client/utils.py\ndiff --git a/reana_client/utils.py b/reana_client/utils.py\nindex b8596bf..c19ac20 100644\n--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"stderr": "",
"exit_code": 0
}Turn 11at 282 s40 tokens out13,683 prompt tokens
The diff looks correct and minimal. Check for any untracked files. None. Check for any modifications to `tests/`. None.
TOOL CALL · submit_patch
Result of submit_patch 55 characters
{
"status": "ok",
"patch_size": 824,
"files_changed": 1
}Turn 12at 291 s108 tokens out13,763 prompt tokens
Completed the task. Fixed the duration calculation for stopped workflows by accounting for `run_stopped_at` when `run_finished_at` is not available.
Turn 13at 291 s
The `get_workflow_duration` function in `reana_client/utils.py` was incorrectly calculating the duration of stopped workflows by using the current time instead of the stop time. I updated the function to prioritize `run_finished_at`, then `run_stopped_at`, and finally `datetime.utcnow()` if neither is available.
Model calls (not matched to turns)
Generated tokens 208 tokens · stopped: STOP
The user is reporting a bug in `reana-client` where the duration of stopped workflows is incorrectly calculated. It seems that `reana_client.utils.get_workflow_duration` only considers `run_finished_at` and doesn't account for `run_stopped_at`. When a workflow is stopped, the duration should be the time between `run_started_at` and `run_stopped_at`. If it's not stopped but finished, it should be between `run_started_at` and `run_finished_at`. If it's still running, it's likely the time from `run_started_at` until now. Let's start by locating the `get_workflow_duration` function in `reana_client/utils.py`.
<|channel>thought
The user is reporting a bug in `reana-client` where the duration of stopped workflows is incorrectly calculated.
It seems that `reana_client.utils.get_workflow_duration` only considers `run_finished_at` and doesn't account for `run_stopped_at`.
When a workflow is stopped, the duration should be the time between `run_started_at` and `run_stopped_at`.
If it's not stopped but finished, it should be between `run_started_at` and `run_finished_at`.
If it's still running, it's likely the time from `run_started_at` until now.
Let's start by locating the `get_workflow_duration` function in `reana_client/utils.py`.<channel|><|tool_call>call:run_command{command:<|"|>grep -rn --include="*.py" "get_workflow_duration" .<|"|>}<tool_call|><|tool_response>
Generated tokens 79 tokens · stopped: STOP
Okay, the function is located at `reana_client/utils.py:134`. Let's examine the implementation of `get_workflow_duration` in `reana_client/utils.py`.
Okay, the function is located at `reana_client/utils.py:134`.
Let's examine the implementation of `get_workflow_duration` in `reana_client/utils.py`.
<channel|><|tool_call>call:read_file{filepath:<|"|>reana_client/utils.py<|"|>,start_line:134}<tool_call|><|tool_response>
Generated tokens 360 tokens · stopped: STOP
The current implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
As suggested in the problem description, it's missing `run_stopped_at`.
If a workflow is stopped, `run_stopped_at` will be present, and that should be used as the `end_time` if it's more appropriate than `run_finished_at` or `datetime.utcnow()`.
Wait, if a workflow is "stopped", it might not have `run_finished_at` but it should have `run_stopped_at`.
If it has both, which one should be used? Usually, "finished" means it completed (success or failure), while "stopped" means it was manually stopped.
Let's check `tests/test_utils.py` to see how it's currently tested.
The current implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
As suggested in the problem description, it's missing `run_stopped_at`.
If a workflow is stopped, `run_stopped_at` will be present, and that should be used as the `end_time` if it's more appropriate than `run_finished_at` or `datetime.utcnow()`.
Wait, if a workflow is "stopped", it might not have `run_finished_at` but it should have `run_stopped_at`.
If it has both, which one should be used? Usually, "finished" means it completed (success or failure), while "stopped" means it was manually stopped.
Let's check `tests/test_utils.py` to see how it's currently tested.
<channel|><|tool_call>call:read_file{filepath:<|"|>tests/test_utils.py<|"|>}<tool_call|><|tool_response>
Generated tokens 620 tokens · stopped: STOP
I can create a reproduction test case for a stopped workflow. A stopped workflow will have `run_started_at` and `run_stopped_at`, but `run_finished_at` will be `None`. Current behavior: If `run_finished_at` is `None`, it uses `datetime.utcnow()`. This is why the duration increases as time passes for a stopped workflow. Correct behavior: If `run_stopped_at` is present, it should be used as `end_time` if `run_finished_at` is not present (or maybe even if it is, but usually "stopped" happens before "finished" if "finished" means successful completion of all steps). Actually, if it's stopped, it's finished. Let's refine the logic: 1. `run_started_at` is required. 2. If `run_finished_at` is present, use it as `end_time`. 3. Else if `run_stopped_at` is present, use it as `end_time`. 4. Else (it's still running), use `datetime.utcnow()` as `end_time`. Wait, if it's stopped, does it also have `run_finished_at`? The problem description says: "when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment." This implies that for a stopped workflow, `run_finished_at` is likely `None` (or not what we want) and `run_stopped_at` is the correct end time. Let's verify this by adding a test case.
I can create a reproduction test case for a stopped workflow.
A stopped workflow will have `run_started_at` and `run_stopped_at`, but `run_finished_at` will be `None`.
Current behavior:
If `run_finished_at` is `None`, it uses `datetime.utcnow()`.
This is why the duration increases as time passes for a stopped workflow.
Correct behavior:
If `run_stopped_at` is present, it should be used as `end_time` if `run_finished_at` is not present (or maybe even if it is, but usually "stopped" happens before "finished" if "finished" means successful completion of all steps). Actually, if it's stopped, it's finished.
Let's refine the logic:
1. `run_started_at` is required.
2. If `run_finished_at` is present, use it as `end_time`.
3. Else if `run_stopped_at` is present, use it as `end_time`.
4. Else (it's still running), use `datetime.utcnow()` as `end_time`.
Wait, if it's stopped, does it also have `run_finished_at`?
The problem description says: "when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
This implies that for a stopped workflow, `run_finished_at` is likely `None` (or not what we want) and `run_stopped_at` is the correct end time.
Let's verify this by adding a test case.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Expected duration: 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# If the bug is present, duration will be something much larger (now - 2022-06-16)
# unless we mock datetime.utcnow()
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 177 tokens · stopped: STOP
Wait, why was stdout empty? Ah, I forgot to actually print it? No, I have `print(f"Duration: {duration}")`.
Wait, maybe `get_workflow_duration` failed or there was an issue?
Actually, looking at `reana_client/utils.py`, `get_workflow_duration` uses `datetime`.
Wait, `from datetime import datetime` is inside `get_workflow_duration`'s `fromisoformat` definition, but is `datetime` imported at the top of `reana_client/utils.py`?
Let me check the top of `reana_client/utils.py`.
Wait, why was stdout empty? Ah, I forgot to actually print it? No, I have `print(f"Duration: {duration}")`.
Wait, maybe `get_workflow_duration` failed or there was an issue?
Actually, looking at `reana_client/utils.py`, `get_workflow_duration` uses `datetime`.
Wait, `from datetime import datetime` is inside `get_workflow_duration`'s `fromisoformat` definition, but is `datetime` imported at the top of `reana_client/utils.py`?
Let me check the top of `reana_client/utils.py`.
<channel|><|tool_call>call:read_file{filepath:<|"|>reana_client/utils.py<|"|>,start_line:1,end_line:50}<tool_call|><|tool_response>
Generated tokens 500 tokens · stopped: STOP
Yes, `datetime` is imported.
Wait, why did the output of the previous `run_command` have empty stdout?
Maybe because `datetime.utcnow()` is being called and it's taking a long time? No.
Wait, I see. I ran:
```python
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Expected duration: 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# If the bug is present, duration will be something much larger (now - 2022-06-16)
# unless we mock datetime.utcnow()
test_duration_stopped_workflow()
```
BUT I DID NOT CALL `test_duration_stopped_workflow()` at the end of the script!
My bad. Let me run it again and actually call the function.
Yes, `datetime` is imported.
Wait, why did the output of the previous `run_command` have empty stdout?
Maybe because `datetime.utcnow()` is being called and it's taking a long time? No.
Wait, I see. I ran:
```python
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Expected duration: 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# If the bug is present, duration will be something much larger (now - 2022-06-16)
# unless we mock datetime.utcnow()
test_duration_stopped_workflow()
```
BUT I DID NOT CALL `test_duration_stopped_workflow()` at the end of the script!
My bad. Let me run it again and actually call the function.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Expected duration: 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
test_duration_stopped_workflow()
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 1,089 tokens · stopped: STOP
The duration is `139241131` seconds, which is indeed the time since June 2022 until now.
So the bug is reproduced.
Now let's fix `get_workflow_duration` in `reana_client/utils.py`.
I will update it to:
1. Get `run_started_at`, `run_finished_at`, and `run_stopped_at`.
2. If `run_started_at` is absent, return `None`.
3. If `run_finished_at` is present, use it as `end_time`.
4. Else if `run_stopped_at` is present, use it as `end_time`.
5. Else use `datetime.utcnow()`.
Wait, if it's stopped, can it also have `run_finished_at`?
Looking at the bug report, "the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
This suggests that for a stopped workflow, `run_finished_at` is likely not set.
Let's check the priority.
If both `run_finished_at` and `run_stopped_at` are present, which one should take precedence?
Usually, `run_finished_at` would be when it actually finished (successfully or with an error). `run_stopped_at` would be when it was stopped.
If it was stopped, it's effectively finished.
Actually, many systems set `run_finished_at` when the workflow reaches a terminal state, whether it was stopped or completed naturally.
However, the bug report explicitly mentions that for a "stopped workflow", the duration is incorrect.
Let's look at the original code:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
I should change it to:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, I need to make sure I get `run_stopped_at` from `progress`.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at") # Add this
```
Let's apply the fix.
The duration is `139241131` seconds, which is indeed the time since June 2022 until now.
So the bug is reproduced.
Now let's fix `get_workflow_duration` in `reana_client/utils.py`.
I will update it to:
1. Get `run_started_at`, `run_finished_at`, and `run_stopped_at`.
2. If `run_started_at` is absent, return `None`.
3. If `run_finished_at` is present, use it as `end_time`.
4. Else if `run_stopped_at` is present, use it as `end_time`.
5. Else use `datetime.utcnow()`.
Wait, if it's stopped, can it also have `run_finished_at`?
Looking at the bug report, "the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
This suggests that for a stopped workflow, `run_finished_at` is likely not set.
Let's check the priority.
If both `run_finished_at` and `run_stopped_at` are present, which one should take precedence?
Usually, `run_finished_at` would be when it actually finished (successfully or with an error). `run_stopped_at` would be when it was stopped.
If it was stopped, it's effectively finished.
Actually, many systems set `run_finished_at` when the workflow reaches a terminal state, whether it was stopped or completed naturally.
However, the bug report explicitly mentions that for a "stopped workflow", the duration is incorrect.
Let's look at the original code:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
I should change it to:
```python
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, I need to make sure I get `run_stopped_at` from `progress`.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at") # Add this
```
Let's apply the fix.
<channel|><|tool_call>call:edit_file{filepath:<|"|>reana_client/utils.py<|"|>,new_string:<|"|> progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n run_stopped_at = progress.get(\"run_stopped_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration<|"|>,old_string:<|"|> progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration<|"|>}<tool_call|><|tool_response>
Generated tokens 219 tokens · stopped: STOP
Now let's verify the fix with the reproduction script.
Now let's verify the fix with the reproduction script.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Expected duration: 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
assert duration == 71
test_duration_stopped_workflow()
print("Test passed!")
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 62 tokens · stopped: STOP
The reproduction test passed. Now I should also check if it didn't break existing tests in `tests/test_utils.py`.
The reproduction test passed. Now I should also check if it didn't break existing tests in `tests/test_utils.py`.
<channel|><|tool_call>call:run_command{command:<|"|>pytest tests/test_utils.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Generated tokens 858 tokens · stopped: STOP
The tests in `tests/test_utils.py` passed.
I should also double check if I need to handle any other "stopped" scenarios or if there's any other place where workflow duration is calculated.
I already grepped for `get_workflow_duration` and it seemed to be only used in `reana_client/cli/workflow.py` and `reana_client/utils.py`.
Let's review the code again.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If it's stopped, `run_finished_at` might be `None`, and `run_stopped_at` might be set. In that case, we use `run_stopped_at`.
If it's finished, `run_finished_at` is set and used.
If it's running, neither is set (or only `run_started_at` is set), and we use `utcnow()`.
This seems correct according to the problem statement.
Wait, what if both `run_finished_at` and `run_stopped_at` are set?
If `run_finished_at` is set, it's the final time the workflow reached a terminal state.
If a workflow was stopped, does it also set `run_finished_at`?
Usually, yes. But if the user says "stopped workflows", and they see the duration increasing, it means `run_finished_at` is NOT coming back for them.
If both are set, `run_finished_at` will take precedence. Is that correct?
Usually "finished" is the most accurate "end" time.
Let's check if there are any other fields in `progress` that could be used.
The code I wrote uses `run_stopped_at`.
One more thing: I should ensure that `run_stopped_at` is handled correctly if it's an empty string or something.
`progress.get("run_stopped_at")` will return `None` if the key is missing.
If it's an empty string, `fromisoformat("")` will fail.
But looking at the existing code, `run_finished_at` was used directly in `if run_finished_at:`.
So `if run_stopped_at:` will also handle `None` and `""` correctly.
Let's check if `run_stopped_at` can be `None` but the workflow is stopped.
The bug report says: "in `reana_client.utils.get_workflow_duration` we only look at `run_finished_at`, but not at `run_stopped_at`."
This strongly suggests that `run_stopped_at` is the field to use.
Final check on `git status` and `git diff`.The tests in `tests/test_utils.py` passed.
I should also double check if I need to handle any other "stopped" scenarios or if there's any other place where workflow duration is calculated.
I already grepped for `get_workflow_duration` and it seemed to be only used in `reana_client/cli/workflow.py` and `reana_client/utils.py`.
Let's review the code again.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
# ...
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If it's stopped, `run_finished_at` might be `None`, and `run_stopped_at` might be set. In that case, we use `run_stopped_at`.
If it's finished, `run_finished_at` is set and used.
If it's running, neither is set (or only `run_started_at` is set), and we use `utcnow()`.
This seems correct according to the problem statement.
Wait, what if both `run_finished_at` and `run_stopped_at` are set?
If `run_finished_at` is set, it's the final time the workflow reached a terminal state.
If a workflow was stopped, does it also set `run_finished_at`?
Usually, yes. But if the user says "stopped workflows", and they see the duration increasing, it means `run_finished_at` is NOT coming back for them.
If both are set, `run_finished_at` will take precedence. Is that correct?
Usually "finished" is the most accurate "end" time.
Let's check if there are any other fields in `progress` that could be used.
The code I wrote uses `run_stopped_at`.
One more thing: I should ensure that `run_stopped_at` is handled correctly if it's an empty string or something.
`progress.get("run_stopped_at")` will return `None` if the key is missing.
If it's an empty string, `fromisoformat("")` will fail.
But looking at the existing code, `run_finished_at` was used directly in `if run_finished_at:`.
So `if run_stopped_at:` will also handle `None` and `""` correctly.
Let's check if `run_stopped_at` can be `None` but the workflow is stopped.
The bug report says: "in `reana_client.utils.get_workflow_duration` we only look at `run_finished_at`, but not at `run_stopped_at`."
This strongly suggests that `run_stopped_at` is the field to use.
Final check on `git status` and `git diff`.<channel|><|tool_call>call:run_command{command:<|"|>git status --short && git diff<|"|>}<tool_call|><|tool_response>
Generated tokens 40 tokens · stopped: STOP
The diff looks correct and minimal. Check for any untracked files. None. Check for any modifications to `tests/`. None.
The diff looks correct and minimal.
Check for any untracked files. None.
Check for any modifications to `tests/`. None.<channel|><|tool_call>call:submit_patch{}<tool_call|><|tool_response>
Patch, tests and logs
Final code change Included
diff --git a/reana_client/utils.py b/reana_client/utils.py
index b8596bf..c19ac20 100644
--- a/reana_client/utils.py
+++ b/reana_client/utils.py
@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
Test output Included
============================= test session starts ============================== collected 139 items tests/test_cli_files.py ................... [ 13%] tests/test_cli_ping.py .... [ 16%] tests/test_cli_retention_rules.py . [ 17%] tests/test_cli_secrets.py ......... [ 23%] tests/test_cli_workflows.py ............................................ [ 55%] ...x.... [ 61%] tests/test_utils.py .... [ 64%] tests/test_validate_compute_backends.py .................... [ 78%] tests/test_validate_environments.py ................ [ 89%] tests/test_validate_parameters.py ........ [ 95%] tests/test_validate_server_capabilities.py ..... [ 99%] tests/test_version.py . [100%] ==================================== PASSES ==================================== _____________ test_create_snakemake_workflow_from_json_parameters ______________ ----------------------------- Captured stdout call ----------------------------- Building DAG of jobs... Job stats: job count ----- ------- foo 1 total 1 ------------------------------ Captured log call ------------------------------- WARNING snakemake.logging:logging.py:580 Building DAG of jobs... WARNING snakemake.logging:logging.py:590 Job stats: job count ----- ------- foo 1 total 1 _________________________ test_validate_parameters_cwl _________________________ ----------------------------- Captured stderr call ----------------------------- /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools - generated xml file: /tmp/rebench-grade-9441b5a0f7fd4ef0b17e936aaca5ce2d.xml -- ---------- coverage: platform linux, python 3.10.19-final-0 ---------- Name Stmts Miss Cover Missing --------------------------------------------------------------------------- reana_client/__init__.py 4 0 100% reana_client/api/__init__.py 2 0 100% reana_client/api/client.py 415 226 46% 57, 63-71, 84-105, 155-170, 190-205, 229-244, 286, 288, 290, 293, 303, 328-343, 367-382, 411-427, 442-469, 507-525, 554, 560-567, 598-613, 629, 631-634, 640-641, 646, 649-650, 655-665, 677, 686-692, 711-726, 738-760, 776-811, 825-850, 869-896, 923-937, 956-970, 995-1010, 1039-1054, 1080, 1096-1098, 1116-1136, 1154-1169, 1190-1205, 1220-1244, 1269-1282 reana_client/api/utils.py 9 0 100% reana_client/cli/__init__.py 47 18 62% 60-77 reana_client/cli/cwl_runner.py 159 159 0% 8-265 reana_client/cli/files.py 306 74 76% 45, 159-168, 221-236, 257, 265-280, 282, 322-328, 336-342, 350-354, 373-374, 404-405, 411-412, 421-438, 440, 490-497, 530-534, 577-584, 643-649 reana_client/cli/ping.py 60 22 63% 25, 67-74, 87, 112-130 reana_client/cli/quotas.py 41 22 46% 30, 72-116 reana_client/cli/retention_rules.py 28 5 82% 29, 64-67 reana_client/cli/secrets.py 73 18 75% 30, 85-91, 113-127, 154-160 reana_client/cli/utils.py 183 52 72% 162, 165-166, 186-190, 193, 197-203, 211-212, 257-258, 288-294, 300-304, 322-328, 340-408 reana_client/cli/workflow.py 579 210 64% 60, 67, 369-370, 388-395, 488-497, 589-668, 718, 726, 731, 749-751, 761-765, 770-773, 800-808, 844-937, 1003-1011, 1013-1020, 1022-1028, 1054-1080, 1207-1235, 1277-1336, 1342, 1412-1421, 1450-1459 reana_client/config.py 35 0 100% reana_client/errors.py 4 0 100% reana_client/printer.py 17 2 88% 41-47 reana_client/utils.py 120 29 76% 31-37, 74, 78, 89, 97, 119-124, 128-131, 166-185, 244-251, 280 reana_client/validation/__init__.py 1 0 100% reana_client/validation/compute_backends.py 14 3 79% 32-38 reana_client/validation/environments.py 200 135 32% 42-62, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 225-244, 249-308, 325, 328-338, 341-363, 380-395, 407-410, 419-429, 434-462, 471-484, 492-503 reana_client/validation/parameters.py 31 0 100% reana_client/validation/utils.py 64 17 73% 39-47, 56, 62-81, 87, 105-109 reana_client/validation/workspace.py 15 0 100% reana_client/version.py 3 0 100% --------------------------------------------------------------------------- TOTAL 2410 992 59% Coverage XML written to file coverage.xml =========================== short test summary info ============================ PASSED tests/test_cli_files.py::test_list_files_server_not_reachable PASSED tests/test_cli_files.py::test_list_files_server_no_token PASSED tests/test_cli_files.py::test_list_files_ok PASSED tests/test_cli_files.py::test_list_files_url PASSED tests/test_cli_files.py::test_download_file PASSED tests/test_cli_files.py::test_download_file_stdout PASSED tests/test_cli_files.py::test_download_multiple_files_stdout PASSED tests/test_cli_files.py::test_upload_file PASSED tests/test_cli_files.py::test_upload_file_respect_gitignore PASSED tests/test_cli_files.py::test_upload_file_skip_empty_git_and_reana_ignore_files PASSED tests/test_cli_files.py::test_upload_file_respect_reanaignore_and_gitignore PASSED tests/test_cli_files.py::test_delete_file PASSED tests/test_cli_files.py::test_delete_non_existing_file PASSED tests/test_cli_files.py::test_move_files PASSED tests/test_cli_files.py::test_list_files_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_valid_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_invalid_filter PASSED tests/test_cli_files.py::test_list_files_filter_with_filename PASSED tests/test_cli_files.py::test_prune_workspace PASSED tests/test_cli_ping.py::test_ping_token_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_reachable PASSED tests/test_cli_ping.py::test_ping_ok PASSED tests/test_cli_retention_rules.py::test_retention_rules_list PASSED tests/test_cli_secrets.py::test_secrets_list_server_not_reachable PASSED tests/test_cli_secrets.py::test_secrets_list_server_no_token PASSED tests/test_cli_secrets.py::test_secrets_list_ok PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reanauser] PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reana=user] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[wrongformat] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[PASS:123] PASSED tests/test_cli_secrets.py::test_secrets_add_already_exist PASSED tests/test_cli_secrets.py::test_secrets_delete PASSED tests/test_cli_workflows.py::test_workflows_server_not_connected PASSED tests/test_cli_workflows.py::test_workflows_no_token PASSED tests/test_cli_workflows.py::test_workflows_server_ok PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options0-expected_status_filter0] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options1-expected_status_filter1] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options2-expected_status_filter2] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options3-expected_status_filter3] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options4-expected_status_filter4] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options5-expected_status_filter5] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options6-expected_status_filter6] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options7-expected_status_filter7] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options8-expected_status_filter8] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ] PASSED tests/test_cli_workflows.py::test_workflows_sessions PASSED tests/test_cli_workflows.py::test_workflows_valid_json PASSED tests/test_cli_workflows.py::test_workflows_include_progress PASSED tests/test_cli_workflows.py::test_workflows_without_include_progress PASSED tests/test_cli_workflows.py::test_workflows_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_without_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_format PASSED tests/test_cli_workflows.py::test_workflows_filter PASSED tests/test_cli_workflows.py::test_workflow_create_failed PASSED tests/test_cli_workflows.py::test_workflow_create_successful PASSED tests/test_cli_workflows.py::test_workflow_create_not_valid_name PASSED tests/test_cli_workflows.py::test_create_workflow_from_json PASSED tests/test_cli_workflows.py::test_create_snakemake_workflow_from_json_parameters PASSED tests/test_cli_workflows.py::test_workflow_start_successful[created-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[pending-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[queued-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[running-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[deleted-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[queued-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[pending-deleted-1] PASSED tests/test_cli_workflows.py::test_workflows_validate PASSED tests/test_cli_workflows.py::test_get_workflow_status_ok PASSED tests/test_cli_workflows.py::test_run PASSED tests/test_cli_workflows.py::test_workflow_input_parameters PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info0-True] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info1-False] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info2-False] PASSED tests/test_cli_workflows.py::test_close_interactive_session PASSED tests/test_cli_workflows.py::test_multiple_specifications PASSED tests/test_cli_workflows.py::test_yml_ext_specification PASSED tests/test_cli_workflows.py::test_run_with_no_inputs PASSED tests/test_utils.py::test_duration_pending_workflow PASSED tests/test_utils.py::test_duration_finished_workflow PASSED tests/test_utils.py::test_duration_stopped_workflow PASSED tests/test_utils.py::test_duration_running_workflow PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:baz-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar-not have an explicit tag-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:master-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar -contains illegal characters-True] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-bar-foo:bar] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo--foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-None-foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-latest-foo:latest] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7] PASSED tests/test_validate_parameters.py::test_validate_parameters_cwl PASSED tests/test_validate_parameters.py::test_validate_parameters_serial PASSED tests/test_validate_parameters.py::test_validate_parameters_yadage PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands0-gendata-] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4] PASSED tests/test_version.py::test_version XFAIL tests/test_cli_workflows.py::test_open_interactive_session[wrong-interactive-type-reana_info3-True] ======================= 138 passed, 1 xfailed in 11.60s ========================
Test errors Included
/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources
Test report (JUnit) Included
<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="1" tests="139" time="11.601" timestamp="2026-11-14T04:50:34.172184" hostname="041a71c24351"><testcase classname="tests.test_cli_files" name="test_list_files_server_not_reachable" time="0.002" /><testcase classname="tests.test_cli_files" name="test_list_files_server_no_token" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_ok" time="0.132" /><testcase classname="tests.test_cli_files" name="test_list_files_url" time="0.122" /><testcase classname="tests.test_cli_files" name="test_download_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file_stdout" time="0.002" /><testcase classname="tests.test_cli_files" name="test_download_multiple_files_stdout" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_gitignore" time="0.002" /><testcase classname="tests.test_cli_files" name="test_upload_file_skip_empty_git_and_reana_ignore_files" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_reanaignore_and_gitignore" time="0.004" /><testcase classname="tests.test_cli_files" name="test_delete_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_delete_non_existing_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_move_files" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_filter" time="0.124" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_valid_filter" time="0.124" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_invalid_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_files_filter_with_filename" time="0.123" /><testcase classname="tests.test_cli_files" name="test_prune_workspace" time="0.171" /><testcase classname="tests.test_cli_ping" name="test_ping_token_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_reachable" time="0.125" /><testcase classname="tests.test_cli_ping" name="test_ping_ok" time="0.123" /><testcase classname="tests.test_cli_retention_rules" name="test_retention_rules_list" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_not_reachable" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_no_token" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_ok" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reanauser]" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reana=user]" time="0.124" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[wrongformat]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[PASS:123]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_already_exist" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_delete" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_not_connected" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_no_token" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_ok" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options0-expected_status_filter0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options1-expected_status_filter1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options2-expected_status_filter2]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options3-expected_status_filter3]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options4-expected_status_filter4]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options5-expected_status_filter5]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options6-expected_status_filter6]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options7-expected_status_filter7]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options8-expected_status_filter8]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sessions" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_valid_json" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_progress" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_progress" time="0.126" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_workspace_size" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_workspace_size" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_format" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_filter" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_failed" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_successful" time="0.129" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_not_valid_name" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_create_workflow_from_json" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_create_snakemake_workflow_from_json_parameters" time="0.315" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[created-0]" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[pending-0]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[queued-0]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[running-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[finished-0]" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[failed-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[deleted-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[stopped-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-failed-1]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-stopped-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[queued-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[pending-deleted-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_validate" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_get_workflow_status_ok" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_run" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_input_parameters" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info0-True]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info1-False]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info2-False]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[wrong-interactive-type-reana_info3-True]" time="0.125"><skipped type="pytest.xfail" message="" /></testcase><testcase classname="tests.test_cli_workflows" name="test_close_interactive_session" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_multiple_specifications" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_yml_ext_specification" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_run_with_no_inputs" time="0.005" /><testcase classname="tests.test_utils" name="test_duration_pending_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_finished_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_stopped_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_running_workflow" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends0-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends1-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends2-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends3-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[htcondorcern-supported_backends4-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:baz-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar-not have an explicit tag-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:master-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:-has invalid tag-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar -contains illegal characters-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-bar-foo:bar]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo--foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-None-foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-latest-foo:latest]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_cwl" time="4.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_serial" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_yadage" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands0-gendata-]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0]" time="0.127" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1]" time="0.120" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2]" time="0.129" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3]" time="0.131" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4]" time="0.128" /><testcase classname="tests.test_version" name="test_version" time="0.000" /></testsuite></testsuites>
Agent log Included
[ 0.0s] 📋 System Prompt: You are a principal Python software engineer resolving a repository issue in `/workspace`.
[ 0.0s] 🎯 Task Prompt: You are evaluating a software engineering task for repository reanahub/reana-client.
[ 12.7s] 💭 (613 chars) "The user is reporting a bug in `reana-client` where the duration of stopped workflows is
incorrectly calculated.
It seem..."
[ 12.7s] 🔧 run_command grep -rn --include="*.py" "get_workflow_duration" .
[ 12.8s] → ./reana_client/cli/workflow.py:43: get_workflow_duration,
[ 17.6s] 💭 (149 chars) "Okay, the function is located at `reana_client/utils.py:134`.
Let's examine the implementation of `get_workflow_duration..."
[ 17.6s] 📖 read_file (reana_client/utils.py)
[ 17.7s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': 'def get_workflow_duration(workflow:
Dict) -> Optional[…
[ 43.7s] 💭 (1184 chars) "The current implementation of `get_workflow_duration` is:
```python
def get_workflow_duration(workflow: Dict) -> Option..."
[ 43.7s] 📖 read_file (tests/test_utils.py)
[ 43.7s] ✓ {'status': 'ok', 'filepath': 'tests/test_utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This file
is part of REANA…
[ 86.9s] 💭 (1431 chars) "I can create a reproduction test case for a stopped workflow.
A stopped workflow will have `run_started_at` and `run_sto..."
[ 86.9s] 🔧 run_command (19 lines) python3 - <<'PY'
[ 87.7s] 🔧
[ 98.7s] 💭 (477 chars) "Wait, why was stdout empty? Ah, I forgot to actually print it? No, I have `print(f"Duration:
{duration}")`.
Wait, maybe ..."
[ 98.7s] 📖 read_file (reana_client/utils.py)
[ 98.8s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This
file is part of REA…
[ 122.6s] 💭 (968 chars) "Yes, `datetime` is imported.
Wait, why did the output of the previous `run_command` have empty stdout?
Maybe because `da..."
[ 122.6s] 🔧 run_command (18 lines) python3 - <<'PY'
[ 122.8s] → Duration: 139241131
[ 188.9s] 💭 (2441 chars) "The duration is `139241131` seconds, which is indeed the time since June 2022 until now.
So the bug is reproduced.
Now ..."
[ 188.9s] ✏️ edit_file (reana_client/utils.py)
[ 189.1s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'occurrences': 1, 'strategy': 'unescaped', 'diff':
'--- a/reana_cl…
[ 198.7s] 💭 (54 chars) "Now let's verify the fix with the reproduction script."
[ 198.7s] 🔧 run_command (20 lines) python3 - <<'PY'
[ 198.9s] → Duration: 71
[ 205.8s] 💭 (113 chars) "The reproduction test passed. Now I should also check if it didn't break existing tests in
`tests/test_utils.py`."
[ 205.8s] 🔧 run_command pytest tests/test_utils.py -q --tb=short --no-header
[ 207.7s] → ... [100%]
[ 278.1s] 💭 (2817 chars) "The tests in `tests/test_utils.py` passed.
I should also double check if I need to handle any other "stopped" scenarios..."
[ 278.1s] 🔧 run_command git status --short && git diff
[ 278.2s] → M reana_client/utils.py
[ 281.2s] 💭 (119 chars) "The diff looks correct and minimal.
Check for any untracked files. None.
Check for any modifications to `tests/`. None."
[ 281.2s] 🤖 submit_patch
[ 281.2s] → submit_patch: {"status": "ok", "patch_size": 824, "files_changed": 1}
[ 290.5s] 💭 (148 chars) "Completed the task. Fixed the duration calculation for stopped workflows by accounting for
`run_stopped_at` when `run_fi..."
[ 290.5s] ✅ Agent finished: The `get_workflow_duration` function in `reana_client/utils.py` was incorrectly
calculating the duration of stopped workflows by using the current time instead of the stop time. I updated the
function...
Native result row
{
"agent_error": null,
"duration_seconds": 307.57,
"error": null,
"grade": {
"collected_tests": 139,
"competition_junit_ok": true,
"error": null,
"required_issues_count": 0,
"resolved": true,
"status_counts": {
"PASSED": 138,
"SKIPPED": 1
},
"strict_clean_patch": true,
"test_exit_code": 0
},
"instance_id": "reanahub__reana-client-701",
"pass_idx": 0,
"patch_chars": 824,
"phase1_seconds": 293.21,
"repo": "reanahub/reana-client",
"request_log_path": "/kaggle-root/working/r31/rollouts_X/requests/reanahub__reana-client-701__p0__r4.jsonl",
"resolved": true,
"rollout_idx": 4,
"run_key": "reanahub__reana-client-701__p0__r4",
"strict_clean_patch": true,
"tool_calls": 10,
"total_llm_calls": 12,
"trace_path": "/kaggle-root/working/r31/rollouts_X/traces/trace_reanahub__reana-client-701__p0__r4.json"
}