ROLLOUT 0 · reanahub/reana-client
reanahub__reana-client-701
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13model calls
3,401tokens generated
106,323prompt tokens read
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System instructions 4,822 characters
You are a principal Python software engineer resolving a repository issue in `/workspace`. Your sole objective is to produce a minimal, root-cause source patch that passes every hidden fail-to-pass and pass-to-pass regression test on the first grading run. ## Critical Environment & Grader Rules 1. **Air-Gapped Sandbox & Available CLI Tools**: No network access. Never run `pip`, `uv`, `conda`, or `git fetch`. Note: `rg` (`ripgrep`) is NOT installed in the container — always use `grep -rn --include="*.py"` for fast exact searches so you never waste a tool call on `command not found`. 2. **Protected Grading Paths**: Before running official verification, the grading harness **strips and reverts all changes** to `tests/`, `test/`, `testing/`, `test_*.py`, `*_test.py`, `conftest.py`, `pyproject.toml`, `setup.cfg`, `pytest.ini`, and `tox.ini`. Every part of your fix MUST reside in non-test production source files. 3. **Untracked File Trap (`git add -N .`)**: `submit_patch` stages ALL untracked files inside `/workspace`! Never leave reproduction or scratch files inside `/workspace` — run reproductions inline via `python3 - <<'PY'` or inside `/tmp/repro.py` in a single `run_command`. 4. **Stdout Truncation Rule**: `run_command` truncates stdout after the first 5,000 characters from the TOP. Always run pytest quietly with short tracebacks: `pytest path/to/test_file.py -k pattern -q --tb=short --no-header` If a test file is large, redirect output to `/tmp/pytest.log` and inspect `tail -n 80 /tmp/pytest.log` so failure tracebacks at the bottom are never cut off. 5. **Strict Pacing Discipline**: `get_status` and `submit_patch` are free and do NOT count toward `max_tool_calls`. Target **16-22 counted tool calls total**, and **begin your first `edit_file` change no later than tool call 15**. Reserve at least 4 calls for verification, `git status --short && git diff`, and submission. ## Execution Protocol ### Phase 1 — Pinpoint Code & Tests Immediately (1-2 tool calls) - The user message already contains `Workspace Layout` — do NOT waste a turn running `ls` on top-level directories. - Run a single compound `run_command` with `grep -rn --include="*.py"` to locate: (a) the exact symbols, error strings, or functions from the problem description, (b) **all parallel or sibling implementations** (for example sync + async variants, `Client` + `AsyncClient`, serializer + deserializer, multiple backends/dialects, base + subclass methods, `__init__.py` / `__all__` exports), and (c) the closest existing unit test files under `tests/`. ### Phase 2 — Deep Read & Spec Anchor (2-5 tool calls) - Use `read_file` with generous `start_line` and `end_line` windows (180-300 lines per call so you read whole modules in fewer calls) on the target function/class, callers, type annotations, and neighboring tests. - Before editing, verify every explicit and implicit requirement from the issue: exact parameter names, defaults, boundary/domain edge cases, exception types/messages, `None` vs empty collection vs falsy (`0`, `False`, `""`) semantics, mutability/copying, and return types. ### Phase 3 — Reproduce Bug in One Call (1 tool call) - Run ONE concise command (`python3 - <<'PY' ... PY` or targeted `pytest ... -q --tb=short --no-header`) via `run_command` to observe the exact pre-fix failure. Do NOT spend multiple tool calls writing separate reproduction scripts. ### Phase 4 — Surgical Implementation Across All Parallel Paths (1-4 tool calls) - Begin editing by tool call 15! Use `edit_file` with 4-6 lines of exact surrounding context copied from `read_file`. - Update ALL parallel codepaths (sync/async, multiple classes/dialects, type hints) consistently so partial fixes do not fail sibling tests. - **2-Strike Edit Rule**: If `edit_file` fails twice on the same block due to whitespace or escaping, do not retry `edit_file` a third time — apply an atomic Python transformation via `run_command` and immediately verify `python3 -m py_compile path/to/file.py`. ### Phase 5 — Edge-Case Verification, Diff Hygiene & Clean Exit (2-4 tool calls) - Run a single compound `run_command` testing both your reproduction + boundary edge cases (`None`, empty input, leading/trailing delimiters, subdomain/prefix boundaries, subclass/async parity) AND the relevant existing `pytest` module(s) with `-q --tb=short --no-header`. - Run `git status --short && git diff` via `run_command`. Confirm: - ZERO untracked (`??`) files in `/workspace` (`rm -f` any untracked workspace files immediately), - ZERO modifications to `tests/` or protected config files (`git checkout -- tests/` if touched), - Minimal, clean diff with valid imports and indentation. - Call `submit_patch` once verification passes, then respond with a brief 2-sentence plain-text summary and make NO further tool calls.
Task prompt 6,896 characters
You are evaluating a software engineering task for repository reanahub/reana-client. Problem Statement: cli: duration of stopped workflows is not displayed correctly Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment. ```console ❯ reana-client status -w recast --include-duration --json | jq '.[0].status' "stopped" ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2598 # After a few seconds... ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2604 ``` This is very likely because in [`reana_client.utils.get_workflow_duration`](https://github.com/reanahub/reana-client/blob/5b278f131b59d3ecfd3c7f129040a126cd01b60a/reana_client/utils.py#L134) we only look at `run_finished_at`, but not at `run_stopped_at`. ## Hints: codecov[bot]: ## [Codecov](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) Report All modified and coverable lines are covered by tests :white_check_mark: > Comparison is base [(`fa5b7c7`)](https://app.codecov.io/gh/reanahub/reana-client/commit/fa5b7c76eb25bfb1591e6fae4a142d975e14b937?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.57% compared to head [(`d3925f2`)](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.62%. <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) ```diff @@ Coverage Diff @@ ## master #701 +/- ## ========================================== + Coverage 58.57% 58.62% +0.05% ========================================== Files 24 24 Lines 2390 2393 +3 ========================================== + Hits 1400 1403 +3 Misses 990 990 ``` | [Files](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) | Coverage Δ | | |---|---|---| | [reana\_client/api/client.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L2FwaS9jbGllbnQucHk=) | `45.54% <100.00%> (ø)` | | | [reana\_client/utils.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3V0aWxzLnB5) | `76.47% <100.00%> (+0.60%)` | :arrow_up: | | [reana\_client/validation/environments.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3ZhbGlkYXRpb24vZW52aXJvbm1lbnRzLnB5) | `32.50% <ø> (ø)` | | </details> giuseppe-steduto: Note for the reviewer: I chose `status` as the scope of the commit because I think that the commands affected by the PR are a nice user-facing scope for changes to the client. For example, this PR fixes `status`, `list`, and in general the commands that use the `--include-duration` flag, I chose `status` as it is the one most evidently impacted. WDYT? mdonadoni: Regarding the scope, I think `fix(status)` can be a good choice. WDYT @tiborsimko ? ## Task Budget (Session terminates when any budget is exhausted) - Time allowance: 7.5 minutes - Tool calls allowance: 30 calls - Max loop iterations: 40 turns ## Execution Environment Rules - Single command timeout: 90 seconds (commands exceeding this fail without ending the session) - Command output limit: 5000 characters - File view limit: 150 lines per read_file call - File character limit: 10000 characters per read_file call - Environment is offline (no network/PyPI access). All repository and test dependencies are ALREADY pre-installed. Do NOT attempt to run pip install or download packages. ## Instructions: 0. All source code is under `/workspace`. Do NOT search outside `/workspace` (e.g. `/usr/`, `/wheels/`, system site-packages). If imports fail, the issue is in the source code under `/workspace`, not in missing system packages. 1. Analyze the problem statement and any provided hints carefully to identify all requested script paths, CLI subcommands, or Python modules. 2. Inspect existing codebase conventions and test files before making edits. 3. Verify your implementation using targeted tests or inline assertions before submitting. 4. Call submit_patch only after your implementation is complete and verified. 5. As your final action, you must return a text-only response reporting your completion to terminate the session. ## Workspace Layout The repository is located at `/workspace`. Here is the directory tree (up to 3 levels): ``` ./AUTHORS.rst ./CHANGELOG.md ./CHANGES.rst ./CONTRIBUTING.rst ./LICENSE ./MANIFEST.in ./README.rst ./docs ./pytest.ini ./reana_client ./reana_client/__init__.py ./reana_client/api ./reana_client/api/__init__.py ./reana_client/api/client.py ./reana_client/api/utils.py ./reana_client/cli ./reana_client/cli/__init__.py ./reana_client/cli/cwl_runner.py ./reana_client/cli/files.py ./reana_client/cli/ping.py ./reana_client/cli/quotas.py ./reana_client/cli/retention_rules.py ./reana_client/cli/secrets.py ./reana_client/cli/utils.py ./reana_client/cli/workflow.py ./reana_client/config.py ./reana_client/errors.py ./reana_client/printer.py ./reana_client/utils.py ./reana_client/validation ./reana_client/validation/__init__.py ./reana_client/validation/compute_backends.py ./reana_client/validation/environments.py ./reana_client/validation/parameters.py ./reana_client/validation/utils.py ./reana_client/validation/workspace.py ./reana_client/version.py ./requirements-dev.txt ./run-tests.sh ./scripts ./scripts/create-appimage.sh ./scripts/generate_cli_api.py ./setup.cfg ./setup.py ./tests ./tox.ini ```
Turn 1at 17 s230 tokens out4,359 prompt tokens
The user is reporting a bug where the duration of a stopped workflow is not displayed correctly in `reana-client status --include-duration`. The duration should be the time from when the run was started to when it was stopped, but it is currently showing the time from the start until now. The problem seems to be in `reana_client.utils.get_workflow_duration`, where it only checks `run_finished_at` and not `run_stopped_at`. Plan: 1. Locate `reana_client.utils.get_workflow_duration`. 2. Examine the implementation to see how it calculates duration. 3. Create a reproduction test case. 4. Fix the bug by considering `run_stopped_at`. 5. Verify the fix. Let's start by searching for `get_workflow_duration` in `reana_client/utils.py`.
TOOL CALL · run_command
{
"command": "grep -n \"def get_workflow_duration\" reana_client/utils.py"
}Result of run_command 125 characters
{
"status": "ok",
"stdout": "134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\n",
"stderr": "",
"exit_code": 0
}Turn 2at 22 s69 tokens out4,650 prompt tokens
Okay, the function is at line 134 of `reana_client/utils.py`. Let's read the implementation.
TOOL CALL · read_file
{
"end_line": 160,
"filepath": "reana_client/utils.py",
"start_line": 130
}Result of read_file 1,235 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": " # Return the name given as parameter without a `run_number`.\n return workflow_name, \"\"\n\n\ndef get_workflow_duration(workflow: Dict) -> Optional[int]:\n \"\"\"Calculate the duration of the workflow.\n\n :param workflow: Workflow details returned by the server.\n :return: The duration of the workflow in seconds or ``None`` if the starting\n time is not present.\n \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n",
"start_line": 130,
"end_line": 160,
"total_lines": 277,
"is_truncated": false
}Turn 3at 48 s409 tokens out5,114 prompt tokens
The current implementation is:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`.
The problem statement says that for stopped workflows, we should look at `run_stopped_at`.
So, if `run_finished_at` is not present, we should check if `run_stopped_at` is present. If it is, we use it as `end_time`. If neither is present, then it's still running (or in a state where it hasn't finished/stopped), so `datetime.utcnow()` is appropriate.
Let's check if `run_stopped_at` exists in the `progress` dictionary.
Wait, if a workflow is stopped, is `run_finished_at` present? The problem description suggests that it is not, or at least that using `run_stopped_at` is the correct fix.
Actually, if it's stopped, it's not "finished" in the sense of completing successfully or failing, it was stopped by the user.
Let's see if there are any tests for `get_workflow_duration`.
TOOL CALL · run_command
{
"command": "grep -rn \"get_workflow_duration\" tests/"
}Result of run_command 372 characters
{
"status": "ok",
"stdout": "tests/test_utils.py:14:from reana_client.utils import get_workflow_duration\ntests/test_utils.py:24: assert get_workflow_duration(workflow) is None\ntests/test_utils.py:34: assert get_workflow_duration(workflow) == 60 + 11\ntests/test_utils.py:49: assert get_workflow_duration(workflow) == 60 + 11\n",
"stderr": "",
"exit_code": 0
}Turn 4at 50 s36 tokens out5,674 prompt tokens
Let's read `tests/test_utils.py`.
TOOL CALL · read_file
{
"filepath": "tests/test_utils.py"
}Result of read_file 1,574 characters
{
"status": "ok",
"filepath": "tests/test_utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\n\"\"\"REANA client utils tests.\"\"\"\n\nfrom unittest.mock import patch\nfrom datetime import datetime\n\nfrom reana_client.utils import get_workflow_duration\n\n\ndef test_duration_pending_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": None,\n \"run_finished_at\": None,\n }\n }\n assert get_workflow_duration(workflow) is None\n\n\ndef test_duration_finished_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": \"2022-06-16T14:43:22\",\n }\n }\n assert get_workflow_duration(workflow) == 60 + 11\n\n\ndef test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11",
"start_line": 1,
"end_line": 49,
"total_lines": 49,
"is_truncated": false
}Turn 5at 85 s413 tokens out6,265 prompt tokens
I will create a reproduction script to verify the bug. The bug happens when the workflow is stopped but not finished.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime, timedelta\nfrom reana_client.utils import get_workflow_duration\n\ndef test_stopped_workflow_duration():\n # Mocking the progress dictionary for a stopped workflow\n # run_started_at is given, run_finished_at is None, run_stopped_at is given\n start_time = \"2023-01-01T10:00:00\"\n stopped_time = \"2023-01-01T10:05:00\" # 5 minutes later\n \n workflow = {\n \"progress\": {\n \"run_started_at\": start_time,\n \"run_finished_at\": None,\n \"run_stopped_at\": stopped_time,\n }\n }\n \n # The duration should be the difference between stopped_time and start_time (300 seconds)\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n \n # Current implementation uses datetime.utcnow() if run_finished_at is None\n # So it will likely be much larger than 300 seconds.\n assert duration == 300, f\"Expected duration to be 300, but got {duration}\"\n\nif __name__ == \"__main__\":\n try:\n test_stopped_workflow_duration()\n print(\"Test passed!\")\n except AssertionError as e:\n print(f\"Test failed: {e}\")\n except Exception as e:\n print(f\"An error occurred: {e}\")\nPY\n"
}Result of run_command 477 characters
{
"status": "ok",
"stdout": "Duration: 122064402\nTest failed: Expected duration to be 300, but got 122064402\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 6at 124 s712 tokens out6,866 prompt tokens
The reproduction script confirmed the bug. `get_workflow_duration` returned a very large number because it used `datetime.utcnow()` instead of `run_stopped_at`.
Now I need to modify `reana_client/utils.py` to consider `run_stopped_at`.
The logic should be:
1. Get `run_started_at`. If not present, return `None`.
2. Get `run_finished_at`.
3. Get `run_stopped_at`.
4. Determine `end_time`:
- If `run_finished_at` is present, use it.
- Else if `run_stopped_at` is present, use it.
- Else, use `datetime.utcnow()`.
5. Calculate duration as the difference between `end_time` and `run_started_at`.
Wait, what if both `run_finished_at` and `run_stopped_at` are present?
Usually, if it's finished, that's the final end time. If it's stopped, that's the end time.
Actually, the problem says "duration of stopped workflows is not displayed correctly". If it's stopped, `run_finished_at` might be `None`.
If it's finished, `run_finished_at` is populated.
If it's stopped, `run_stopped_at` is populated.
Let's look at the code again.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
I will change it to:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
Let's double check if there's any other place where duration is calculated.
I'll search for "duration" in the codebase.
TOOL CALL · run_command
{
"command": "grep -rn \"duration\" reana_client/"
}Result of run_command 2,081 characters
{
"status": "ok",
"stdout": "reana_client/cli/workflow.py:43: get_workflow_duration,\nreana_client/cli/workflow.py:108: \"progress, duration.\",\nreana_client/cli/workflow.py:126: \"--include-duration\",\nreana_client/cli/workflow.py:127: \"include_duration\",\nreana_client/cli/workflow.py:130: help=\"Include the duration of the workflows in seconds. In case a workflow is in \"\nreana_client/cli/workflow.py:131: \"progress, its duration as of now will be shown.\",\nreana_client/cli/workflow.py:172: include_duration: bool,\nreana_client/cli/workflow.py:225: duration_header = [\"duration\"]\nreana_client/cli/workflow.py:243: if verbose or include_duration:\nreana_client/cli/workflow.py:244: headers[type] += duration_header\nreana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\nreana_client/cli/workflow.py:688: \"--include-duration\",\nreana_client/cli/workflow.py:689: \"include_duration\",\nreana_client/cli/workflow.py:692: help=\"Include the duration of the workflow in seconds. In case the workflow is in \"\nreana_client/cli/workflow.py:693: \"progress, its duration as of now will be shown.\",\nreana_client/cli/workflow.py:700: ctx, workflow, _format, output_format, include_duration, access_token, verbose\nreana_client/cli/workflow.py:794: if verbose or include_duration:\nreana_client/cli/workflow.py:795: headers += [\"duration\"]\nreana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\nreana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\nreana_client/utils.py:135: \"\"\"Calculate the duration of the workflow.\nreana_client/utils.py:138: :return: The duration of the workflow in seconds or ``None`` if the starting\nreana_client/utils.py:150: duration = None\nreana_client/utils.py:157: duration = round((end_time - start_time).total_seconds())\nreana_client/utils.py:158: return duration\n",
"stderr": "",
"exit_code": 0
}Turn 7at 140 s391 tokens out8,300 prompt tokens
It seems `get_workflow_duration` is the only place where duration is calculated. Let's apply the fix to `reana_client/utils.py`.
TOOL CALL · edit_file
{
"filepath": "reana_client/utils.py",
"new_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n run_stopped_at = progress.get(\"run_stopped_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration",
"old_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration"
}Result of edit_file 828 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"occurrences": 1,
"strategy": "exact",
"diff": "--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"is_truncated": false
}Turn 8at 185 s839 tokens out8,986 prompt tokens
Now let's run the reproduction script again to verify the fix.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime, timedelta\nfrom reana_client.utils import get_workflow_duration\n\ndef test_stopped_workflow_duration():\n # Mocking the progress dictionary for a stopped workflow\n start_time = \"2023-01-01T10:00:00\"\n stopped_time = \"2023-01-01T10:05:00\" # 5 minutes later\n \n workflow = {\n \"progress\": {\n \"run_started_at\": start_time,\n \"run_finished_at\": None,\n \"run_stopped_at\": stopped_time,\n }\n }\n \n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n assert duration == 300, f\"Expected duration to be 300, but got {duration}\"\n\ndef test_finished_workflow_duration():\n start_time = \"2023-01-01T10:00:00\"\n finished_time = \"2023-01-01T10:02:00\" # 2 minutes later\n \n workflow = {\n \"progress\": {\n \"run_started_at\": start_time,\n \"run_finished_at\": finished_time,\n \"run_stopped_at\": \"2023-01-01T10:01:00\", # stopped before it finished? Odd but let's see\n }\n }\n \n duration = get_workflow_duration(workflow)\n print(f\"Finished Duration: {duration}\")\n assert duration == 120, f\"Expected duration to be 120, but got {duration}\"\n\ndef test_running_workflow_duration():\n start_time = \"2023-01-01T10:00:00\"\n \n workflow = {\n \"progress\": {\n \"run_started_at\": start_time,\n \"run_finished_at\": None,\n \"run_stopped_at\": None,\n }\n }\n \n # This one depends on current time, so let's mock it\n from unittest.mock import patch\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2023, 1, 1, 10, 0, 10)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n duration = get_workflow_duration(workflow)\n print(f\"Running Duration: {duration}\")\n assert duration == 10, f\"Expected duration to be 10, but got {duration}\"\n\nif __name__ == \"__main__\":\n try:\n test_stopped_workflow_duration()\n print(\"test_stopped_workflow_duration passed!\")\n test_finished_workflow_duration()\n print(\"test_finished_workflow_duration passed!\")\n test_running_workflow_duration()\n print(\"test_running_workflow_duration passed!\")\n print(\"All tests passed!\")\n except AssertionError as e:\n print(f\"Test failed: {e}\")\n except Exception as e:\n print(f\"An error occurred: {e}\")\nPY\n"
}Result of run_command 596 characters
{
"status": "ok",
"stdout": "Duration: 300\ntest_stopped_workflow_duration passed!\nFinished Duration: 120\ntest_finished_workflow_duration passed!\nRunning Duration: 10\ntest_running_workflow_duration passed!\nAll tests passed!\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 9at 194 s62 tokens out10,033 prompt tokens
The reproduction tests passed. Now I should also run the existing tests in `tests/test_utils.py` to ensure no regressions.
TOOL CALL · run_command
{
"command": "pytest tests/test_utils.py -q --tb=short --no-header"
}Result of run_command 2,957 characters
{
"status": "ok",
"stdout": "... [100%]\n\n---------- coverage: platform linux, python 3.10.19-final-0 ----------\nName Stmts Miss Cover Missing\n---------------------------------------------------------------------------\nreana_client/__init__.py 4 0 100%\nreana_client/api/__init__.py 2 2 0% 9-11\nreana_client/api/client.py 415 415 0% 8-1282\nreana_client/api/utils.py 9 9 0% 8-19\nreana_client/cli/__init__.py 47 47 0% 8-97\nreana_client/cli/cwl_runner.py 159 159 0% 8-265\nreana_client/cli/files.py 306 306 0% 8-649\nreana_client/cli/ping.py 60 60 0% 8-130\nreana_client/cli/quotas.py 41 41 0% 8-116\nreana_client/cli/retention_rules.py 28 28 0% 8-73\nreana_client/cli/secrets.py 73 73 0% 8-160\nreana_client/cli/utils.py 183 183 0% 8-408\nreana_client/cli/workflow.py 579 579 0% 8-1459\nreana_client/config.py 35 0 100%\nreana_client/errors.py 4 0 100%\nreana_client/printer.py 17 13 24% 31-62\nreana_client/utils.py 120 78 35% 30-39, 57-78, 84-89, 94-98, 114-131, 157, 166-185, 194, 206-224, 234-251, 256-257, 262-280\nreana_client/validation/__init__.py 1 0 100%\nreana_client/validation/compute_backends.py 14 7 50% 29-39\nreana_client/validation/environments.py 200 167 16% 42-62, 74-77, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 186-221, 225-244, 249-308, 312-373, 380-395, 399, 407-410, 419-429, 434-462, 471-484, 492-503\nreana_client/validation/parameters.py 31 19 39% 26-37, 42-44, 49, 58, 67, 75-79\nreana_client/validation/utils.py 64 48 25% 38-109, 118-131, 136-144, 151-155\nreana_client/validation/workspace.py 15 8 47% 31-45\nreana_client/version.py 3 0 100%\n---------------------------------------------------------------------------\nTOTAL 2410 2242 7%\nCoverage XML written to file coverage.xml\n\n3 passed in 0.28s\n",
"stderr": "/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 10at 198 s38 tokens out11,252 prompt tokens
Existing tests passed. Now I will verify if there are any untracked files.
TOOL CALL · run_command
{
"command": "git status --short"
}Result of run_command 86 characters
{
"status": "ok",
"stdout": " M reana_client/utils.py\n",
"stderr": "",
"exit_code": 0
}Turn 11at 201 s34 tokens out11,339 prompt tokens
Everything looks clean. I'll do a final `git diff` check.
TOOL CALL · run_command
{
"command": "git diff"
}Result of run_command 912 characters
{
"status": "ok",
"stdout": "diff --git a/reana_client/utils.py b/reana_client/utils.py\nindex b8596bf..c19ac20 100644\n--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"stderr": "",
"exit_code": 0
}Turn 12at 204 s24 tokens out11,711 prompt tokens
The diff is minimal and correct. I am ready to submit.
TOOL CALL · submit_patch
Result of submit_patch 55 characters
{
"status": "ok",
"patch_size": 824,
"files_changed": 1
}Turn 13at 216 s144 tokens out11,774 prompt tokens
Summary of changes: Updated `reana_client/utils.py` in `get_workflow_duration` function to consider `run_stopped_at` when calculating the duration of stopped workflows. This prevents the duration from continuing to increase after a workflow has been stopped.
Turn 14at 216 s
The duration of stopped workflows was incorrectly being calculated as the time from the start of the run until the current moment, because the `get_workflow_duration` function only checked for `run_finished_at`. I updated `reana_client/utils.py` to also check for `run_stopped_at` and use it as the end time if `run_finished_at` is not present.
Model calls (not matched to turns)
Generated tokens 230 tokens · stopped: STOP
The user is reporting a bug where the duration of a stopped workflow is not displayed correctly in `reana-client status --include-duration`. The duration should be the time from when the run was started to when it was stopped, but it is currently showing the time from the start until now. The problem seems to be in `reana_client.utils.get_workflow_duration`, where it only checks `run_finished_at` and not `run_stopped_at`. Plan: 1. Locate `reana_client.utils.get_workflow_duration`. 2. Examine the implementation to see how it calculates duration. 3. Create a reproduction test case. 4. Fix the bug by considering `run_stopped_at`. 5. Verify the fix. Let's start by searching for `get_workflow_duration` in `reana_client/utils.py`.
<|channel>thought
The user is reporting a bug where the duration of a stopped workflow is not displayed correctly in `reana-client status --include-duration`.
The duration should be the time from when the run was started to when it was stopped, but it is currently showing the time from the start until now.
The problem seems to be in `reana_client.utils.get_workflow_duration`, where it only checks `run_finished_at` and not `run_stopped_at`.
Plan:
1. Locate `reana_client.utils.get_workflow_duration`.
2. Examine the implementation to see how it calculates duration.
3. Create a reproduction test case.
4. Fix the bug by considering `run_stopped_at`.
5. Verify the fix.
Let's start by searching for `get_workflow_duration` in `reana_client/utils.py`.<channel|><|tool_call>call:run_command{command:<|"|>grep -n "def get_workflow_duration" reana_client/utils.py<|"|>}<tool_call|><|tool_response>
Generated tokens 69 tokens · stopped: STOP
Okay, the function is at line 134 of `reana_client/utils.py`. Let's read the implementation.
Okay, the function is at line 134 of `reana_client/utils.py`. Let's read the implementation.
<channel|><|tool_call>call:read_file{filepath:<|"|>reana_client/utils.py<|"|>,start_line:130,end_line:160}<tool_call|><|tool_response>
Generated tokens 409 tokens · stopped: STOP
The current implementation is:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`.
The problem statement says that for stopped workflows, we should look at `run_stopped_at`.
So, if `run_finished_at` is not present, we should check if `run_stopped_at` is present. If it is, we use it as `end_time`. If neither is present, then it's still running (or in a state where it hasn't finished/stopped), so `datetime.utcnow()` is appropriate.
Let's check if `run_stopped_at` exists in the `progress` dictionary.
Wait, if a workflow is stopped, is `run_finished_at` present? The problem description suggests that it is not, or at least that using `run_stopped_at` is the correct fix.
Actually, if it's stopped, it's not "finished" in the sense of completing successfully or failing, it was stopped by the user.
Let's see if there are any tests for `get_workflow_duration`.
The current implementation is:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`.
The problem statement says that for stopped workflows, we should look at `run_stopped_at`.
So, if `run_finished_at` is not present, we should check if `run_stopped_at` is present. If it is, we use it as `end_time`. If neither is present, then it's still running (or in a state where it hasn't finished/stopped), so `datetime.utcnow()` is appropriate.
Let's check if `run_stopped_at` exists in the `progress` dictionary.
Wait, if a workflow is stopped, is `run_finished_at` present? The problem description suggests that it is not, or at least that using `run_stopped_at` is the correct fix.
Actually, if it's stopped, it's not "finished" in the sense of completing successfully or failing, it was stopped by the user.
Let's see if there are any tests for `get_workflow_duration`.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn "get_workflow_duration" tests/<|"|>}<tool_call|><|tool_response>
Generated tokens 36 tokens · stopped: STOP
Let's read `tests/test_utils.py`.
Let's read `tests/test_utils.py`.
<channel|><|tool_call>call:read_file{filepath:<|"|>tests/test_utils.py<|"|>}<tool_call|><|tool_response>
Generated tokens 413 tokens · stopped: STOP
I will create a reproduction script to verify the bug. The bug happens when the workflow is stopped but not finished.
I will create a reproduction script to verify the bug. The bug happens when the workflow is stopped but not finished.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime, timedelta
from reana_client.utils import get_workflow_duration
def test_stopped_workflow_duration():
# Mocking the progress dictionary for a stopped workflow
# run_started_at is given, run_finished_at is None, run_stopped_at is given
start_time = "2023-01-01T10:00:00"
stopped_time = "2023-01-01T10:05:00" # 5 minutes later
workflow = {
"progress": {
"run_started_at": start_time,
"run_finished_at": None,
"run_stopped_at": stopped_time,
}
}
# The duration should be the difference between stopped_time and start_time (300 seconds)
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# Current implementation uses datetime.utcnow() if run_finished_at is None
# So it will likely be much larger than 300 seconds.
assert duration == 300, f"Expected duration to be 300, but got {duration}"
if __name__ == "__main__":
try:
test_stopped_workflow_duration()
print("Test passed!")
except AssertionError as e:
print(f"Test failed: {e}")
except Exception as e:
print(f"An error occurred: {e}")
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 712 tokens · stopped: STOP
The reproduction script confirmed the bug. `get_workflow_duration` returned a very large number because it used `datetime.utcnow()` instead of `run_stopped_at`.
Now I need to modify `reana_client/utils.py` to consider `run_stopped_at`.
The logic should be:
1. Get `run_started_at`. If not present, return `None`.
2. Get `run_finished_at`.
3. Get `run_stopped_at`.
4. Determine `end_time`:
- If `run_finished_at` is present, use it.
- Else if `run_stopped_at` is present, use it.
- Else, use `datetime.utcnow()`.
5. Calculate duration as the difference between `end_time` and `run_started_at`.
Wait, what if both `run_finished_at` and `run_stopped_at` are present?
Usually, if it's finished, that's the final end time. If it's stopped, that's the end time.
Actually, the problem says "duration of stopped workflows is not displayed correctly". If it's stopped, `run_finished_at` might be `None`.
If it's finished, `run_finished_at` is populated.
If it's stopped, `run_stopped_at` is populated.
Let's look at the code again.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
I will change it to:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
Let's double check if there's any other place where duration is calculated.
I'll search for "duration" in the codebase.
The reproduction script confirmed the bug. `get_workflow_duration` returned a very large number because it used `datetime.utcnow()` instead of `run_stopped_at`.
Now I need to modify `reana_client/utils.py` to consider `run_stopped_at`.
The logic should be:
1. Get `run_started_at`. If not present, return `None`.
2. Get `run_finished_at`.
3. Get `run_stopped_at`.
4. Determine `end_time`:
- If `run_finished_at` is present, use it.
- Else if `run_stopped_at` is present, use it.
- Else, use `datetime.utcnow()`.
5. Calculate duration as the difference between `end_time` and `run_started_at`.
Wait, what if both `run_finished_at` and `run_stopped_at` are present?
Usually, if it's finished, that's the final end time. If it's stopped, that's the end time.
Actually, the problem says "duration of stopped workflows is not displayed correctly". If it's stopped, `run_finished_at` might be `None`.
If it's finished, `run_finished_at` is populated.
If it's stopped, `run_stopped_at` is populated.
Let's look at the code again.
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
I will change it to:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
Let's double check if there's any other place where duration is calculated.
I'll search for "duration" in the codebase.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn "duration" reana_client/<|"|>}<tool_call|><|tool_response>
Generated tokens 391 tokens · stopped: STOP
It seems `get_workflow_duration` is the only place where duration is calculated. Let's apply the fix to `reana_client/utils.py`.
It seems `get_workflow_duration` is the only place where duration is calculated.
Let's apply the fix to `reana_client/utils.py`.
<channel|><|tool_call>call:edit_file{filepath:<|"|>reana_client/utils.py<|"|>,new_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration<|"|>,old_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration<|"|>}<tool_call|><|tool_response>
Generated tokens 839 tokens · stopped: STOP
Now let's run the reproduction script again to verify the fix.
Now let's run the reproduction script again to verify the fix.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime, timedelta
from reana_client.utils import get_workflow_duration
def test_stopped_workflow_duration():
# Mocking the progress dictionary for a stopped workflow
start_time = "2023-01-01T10:00:00"
stopped_time = "2023-01-01T10:05:00" # 5 minutes later
workflow = {
"progress": {
"run_started_at": start_time,
"run_finished_at": None,
"run_stopped_at": stopped_time,
}
}
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
assert duration == 300, f"Expected duration to be 300, but got {duration}"
def test_finished_workflow_duration():
start_time = "2023-01-01T10:00:00"
finished_time = "2023-01-01T10:02:00" # 2 minutes later
workflow = {
"progress": {
"run_started_at": start_time,
"run_finished_at": finished_time,
"run_stopped_at": "2023-01-01T10:01:00", # stopped before it finished? Odd but let's see
}
}
duration = get_workflow_duration(workflow)
print(f"Finished Duration: {duration}")
assert duration == 120, f"Expected duration to be 120, but got {duration}"
def test_running_workflow_duration():
start_time = "2023-01-01T10:00:00"
workflow = {
"progress": {
"run_started_at": start_time,
"run_finished_at": None,
"run_stopped_at": None,
}
}
# This one depends on current time, so let's mock it
from unittest.mock import patch
with patch("reana_client.utils.datetime") as mock_datetime:
mock_datetime.utcnow.return_value = datetime(2023, 1, 1, 10, 0, 10)
mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(
*args, **kw
)
duration = get_workflow_duration(workflow)
print(f"Running Duration: {duration}")
assert duration == 10, f"Expected duration to be 10, but got {duration}"
if __name__ == "__main__":
try:
test_stopped_workflow_duration()
print("test_stopped_workflow_duration passed!")
test_finished_workflow_duration()
print("test_finished_workflow_duration passed!")
test_running_workflow_duration()
print("test_running_workflow_duration passed!")
print("All tests passed!")
except AssertionError as e:
print(f"Test failed: {e}")
except Exception as e:
print(f"An error occurred: {e}")
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 62 tokens · stopped: STOP
The reproduction tests passed. Now I should also run the existing tests in `tests/test_utils.py` to ensure no regressions.
The reproduction tests passed. Now I should also run the existing tests in `tests/test_utils.py` to ensure no regressions.
<channel|><|tool_call>call:run_command{command:<|"|>pytest tests/test_utils.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Generated tokens 38 tokens · stopped: STOP
Existing tests passed. Now I will verify if there are any untracked files.
Existing tests passed.
Now I will verify if there are any untracked files.
<channel|><|tool_call>call:run_command{command:<|"|>git status --short<|"|>}<tool_call|><|tool_response>
Generated tokens 34 tokens · stopped: STOP
Everything looks clean. I'll do a final `git diff` check.
Everything looks clean. I'll do a final `git diff` check.
<channel|><|tool_call>call:run_command{command:<|"|>git diff<|"|>}<tool_call|><|tool_response>
Generated tokens 24 tokens · stopped: STOP
The diff is minimal and correct. I am ready to submit.
The diff is minimal and correct. I am ready to submit.
<channel|><|tool_call>call:submit_patch{}<tool_call|><|tool_response>
Patch, tests and logs
Final code change Included
diff --git a/reana_client/utils.py b/reana_client/utils.py
index b8596bf..c19ac20 100644
--- a/reana_client/utils.py
+++ b/reana_client/utils.py
@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
Test output Included
============================= test session starts ============================== collected 139 items tests/test_cli_files.py ................... [ 13%] tests/test_cli_ping.py .... [ 16%] tests/test_cli_retention_rules.py . [ 17%] tests/test_cli_secrets.py ......... [ 23%] tests/test_cli_workflows.py ............................................ [ 55%] ...x.... [ 61%] tests/test_utils.py .... [ 64%] tests/test_validate_compute_backends.py .................... [ 78%] tests/test_validate_environments.py ................ [ 89%] tests/test_validate_parameters.py ........ [ 95%] tests/test_validate_server_capabilities.py ..... [ 99%] tests/test_version.py . [100%] ==================================== PASSES ==================================== _____________ test_create_snakemake_workflow_from_json_parameters ______________ ----------------------------- Captured stdout call ----------------------------- Building DAG of jobs... Job stats: job count ----- ------- foo 1 total 1 ------------------------------ Captured log call ------------------------------- WARNING snakemake.logging:logging.py:580 Building DAG of jobs... WARNING snakemake.logging:logging.py:590 Job stats: job count ----- ------- foo 1 total 1 _________________________ test_validate_parameters_cwl _________________________ ----------------------------- Captured stderr call ----------------------------- /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools - generated xml file: /tmp/rebench-grade-5fd9e08b1b18422a8511fb1902ff4401.xml -- ---------- coverage: platform linux, python 3.10.19-final-0 ---------- Name Stmts Miss Cover Missing --------------------------------------------------------------------------- reana_client/__init__.py 4 0 100% reana_client/api/__init__.py 2 0 100% reana_client/api/client.py 415 226 46% 57, 63-71, 84-105, 155-170, 190-205, 229-244, 286, 288, 290, 293, 303, 328-343, 367-382, 411-427, 442-469, 507-525, 554, 560-567, 598-613, 629, 631-634, 640-641, 646, 649-650, 655-665, 677, 686-692, 711-726, 738-760, 776-811, 825-850, 869-896, 923-937, 956-970, 995-1010, 1039-1054, 1080, 1096-1098, 1116-1136, 1154-1169, 1190-1205, 1220-1244, 1269-1282 reana_client/api/utils.py 9 0 100% reana_client/cli/__init__.py 47 18 62% 60-77 reana_client/cli/cwl_runner.py 159 159 0% 8-265 reana_client/cli/files.py 306 74 76% 45, 159-168, 221-236, 257, 265-280, 282, 322-328, 336-342, 350-354, 373-374, 404-405, 411-412, 421-438, 440, 490-497, 530-534, 577-584, 643-649 reana_client/cli/ping.py 60 22 63% 25, 67-74, 87, 112-130 reana_client/cli/quotas.py 41 22 46% 30, 72-116 reana_client/cli/retention_rules.py 28 5 82% 29, 64-67 reana_client/cli/secrets.py 73 18 75% 30, 85-91, 113-127, 154-160 reana_client/cli/utils.py 183 52 72% 162, 165-166, 186-190, 193, 197-203, 211-212, 257-258, 288-294, 300-304, 322-328, 340-408 reana_client/cli/workflow.py 579 210 64% 60, 67, 369-370, 388-395, 488-497, 589-668, 718, 726, 731, 749-751, 761-765, 770-773, 800-808, 844-937, 1003-1011, 1013-1020, 1022-1028, 1054-1080, 1207-1235, 1277-1336, 1342, 1412-1421, 1450-1459 reana_client/config.py 35 0 100% reana_client/errors.py 4 0 100% reana_client/printer.py 17 2 88% 41-47 reana_client/utils.py 120 29 76% 31-37, 74, 78, 89, 97, 119-124, 128-131, 166-185, 244-251, 280 reana_client/validation/__init__.py 1 0 100% reana_client/validation/compute_backends.py 14 3 79% 32-38 reana_client/validation/environments.py 200 135 32% 42-62, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 225-244, 249-308, 325, 328-338, 341-363, 380-395, 407-410, 419-429, 434-462, 471-484, 492-503 reana_client/validation/parameters.py 31 0 100% reana_client/validation/utils.py 64 17 73% 39-47, 56, 62-81, 87, 105-109 reana_client/validation/workspace.py 15 0 100% reana_client/version.py 3 0 100% --------------------------------------------------------------------------- TOTAL 2410 992 59% Coverage XML written to file coverage.xml =========================== short test summary info ============================ PASSED tests/test_cli_files.py::test_list_files_server_not_reachable PASSED tests/test_cli_files.py::test_list_files_server_no_token PASSED tests/test_cli_files.py::test_list_files_ok PASSED tests/test_cli_files.py::test_list_files_url PASSED tests/test_cli_files.py::test_download_file PASSED tests/test_cli_files.py::test_download_file_stdout PASSED tests/test_cli_files.py::test_download_multiple_files_stdout PASSED tests/test_cli_files.py::test_upload_file PASSED tests/test_cli_files.py::test_upload_file_respect_gitignore PASSED tests/test_cli_files.py::test_upload_file_skip_empty_git_and_reana_ignore_files PASSED tests/test_cli_files.py::test_upload_file_respect_reanaignore_and_gitignore PASSED tests/test_cli_files.py::test_delete_file PASSED tests/test_cli_files.py::test_delete_non_existing_file PASSED tests/test_cli_files.py::test_move_files PASSED tests/test_cli_files.py::test_list_files_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_valid_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_invalid_filter PASSED tests/test_cli_files.py::test_list_files_filter_with_filename PASSED tests/test_cli_files.py::test_prune_workspace PASSED tests/test_cli_ping.py::test_ping_token_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_reachable PASSED tests/test_cli_ping.py::test_ping_ok PASSED tests/test_cli_retention_rules.py::test_retention_rules_list PASSED tests/test_cli_secrets.py::test_secrets_list_server_not_reachable PASSED tests/test_cli_secrets.py::test_secrets_list_server_no_token PASSED tests/test_cli_secrets.py::test_secrets_list_ok PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reanauser] PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reana=user] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[wrongformat] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[PASS:123] PASSED tests/test_cli_secrets.py::test_secrets_add_already_exist PASSED tests/test_cli_secrets.py::test_secrets_delete PASSED tests/test_cli_workflows.py::test_workflows_server_not_connected PASSED tests/test_cli_workflows.py::test_workflows_no_token PASSED tests/test_cli_workflows.py::test_workflows_server_ok PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options0-expected_status_filter0] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options1-expected_status_filter1] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options2-expected_status_filter2] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options3-expected_status_filter3] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options4-expected_status_filter4] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options5-expected_status_filter5] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options6-expected_status_filter6] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options7-expected_status_filter7] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options8-expected_status_filter8] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ] PASSED tests/test_cli_workflows.py::test_workflows_sessions PASSED tests/test_cli_workflows.py::test_workflows_valid_json PASSED tests/test_cli_workflows.py::test_workflows_include_progress PASSED tests/test_cli_workflows.py::test_workflows_without_include_progress PASSED tests/test_cli_workflows.py::test_workflows_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_without_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_format PASSED tests/test_cli_workflows.py::test_workflows_filter PASSED tests/test_cli_workflows.py::test_workflow_create_failed PASSED tests/test_cli_workflows.py::test_workflow_create_successful PASSED tests/test_cli_workflows.py::test_workflow_create_not_valid_name PASSED tests/test_cli_workflows.py::test_create_workflow_from_json PASSED tests/test_cli_workflows.py::test_create_snakemake_workflow_from_json_parameters PASSED tests/test_cli_workflows.py::test_workflow_start_successful[created-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[pending-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[queued-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[running-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[deleted-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[queued-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[pending-deleted-1] PASSED tests/test_cli_workflows.py::test_workflows_validate PASSED tests/test_cli_workflows.py::test_get_workflow_status_ok PASSED tests/test_cli_workflows.py::test_run PASSED tests/test_cli_workflows.py::test_workflow_input_parameters PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info0-True] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info1-False] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info2-False] PASSED tests/test_cli_workflows.py::test_close_interactive_session PASSED tests/test_cli_workflows.py::test_multiple_specifications PASSED tests/test_cli_workflows.py::test_yml_ext_specification PASSED tests/test_cli_workflows.py::test_run_with_no_inputs PASSED tests/test_utils.py::test_duration_pending_workflow PASSED tests/test_utils.py::test_duration_finished_workflow PASSED tests/test_utils.py::test_duration_stopped_workflow PASSED tests/test_utils.py::test_duration_running_workflow PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:baz-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar-not have an explicit tag-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:master-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar -contains illegal characters-True] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-bar-foo:bar] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo--foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-None-foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-latest-foo:latest] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7] PASSED tests/test_validate_parameters.py::test_validate_parameters_cwl PASSED tests/test_validate_parameters.py::test_validate_parameters_serial PASSED tests/test_validate_parameters.py::test_validate_parameters_yadage PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands0-gendata-] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4] PASSED tests/test_version.py::test_version XFAIL tests/test_cli_workflows.py::test_open_interactive_session[wrong-interactive-type-reana_info3-True] ======================= 138 passed, 1 xfailed in 11.62s ========================
Test errors Included
/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources
Test report (JUnit) Included
<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="1" tests="139" time="11.614" timestamp="2026-11-14T04:48:56.139583" hostname="4314613cabd3"><testcase classname="tests.test_cli_files" name="test_list_files_server_not_reachable" time="0.002" /><testcase classname="tests.test_cli_files" name="test_list_files_server_no_token" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_ok" time="0.132" /><testcase classname="tests.test_cli_files" name="test_list_files_url" time="0.124" /><testcase classname="tests.test_cli_files" name="test_download_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file_stdout" time="0.002" /><testcase classname="tests.test_cli_files" name="test_download_multiple_files_stdout" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_gitignore" time="0.002" /><testcase classname="tests.test_cli_files" name="test_upload_file_skip_empty_git_and_reana_ignore_files" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_reanaignore_and_gitignore" time="0.004" /><testcase classname="tests.test_cli_files" name="test_delete_file" time="0.122" /><testcase classname="tests.test_cli_files" name="test_delete_non_existing_file" time="0.121" /><testcase classname="tests.test_cli_files" name="test_move_files" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_filter" time="0.122" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_valid_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_invalid_filter" time="0.121" /><testcase classname="tests.test_cli_files" name="test_list_files_filter_with_filename" time="0.122" /><testcase classname="tests.test_cli_files" name="test_prune_workspace" time="0.171" /><testcase classname="tests.test_cli_ping" name="test_ping_token_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_reachable" time="0.122" /><testcase classname="tests.test_cli_ping" name="test_ping_ok" time="0.123" /><testcase classname="tests.test_cli_retention_rules" name="test_retention_rules_list" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_not_reachable" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_no_token" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_ok" time="0.122" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reanauser]" time="0.122" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reana=user]" time="0.128" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[wrongformat]" time="0.002" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[PASS:123]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_already_exist" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_delete" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_not_connected" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_no_token" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_ok" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options0-expected_status_filter0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options1-expected_status_filter1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options2-expected_status_filter2]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options3-expected_status_filter3]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options4-expected_status_filter4]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options5-expected_status_filter5]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options6-expected_status_filter6]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options7-expected_status_filter7]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options8-expected_status_filter8]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sessions" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_valid_json" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_progress" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_progress" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_workspace_size" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_workspace_size" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_format" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_filter" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_failed" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_successful" time="0.127" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_not_valid_name" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_create_workflow_from_json" time="0.127" /><testcase classname="tests.test_cli_workflows" name="test_create_snakemake_workflow_from_json_parameters" time="0.329" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[created-0]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[pending-0]" time="0.124" 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classname="tests.test_cli_workflows" name="test_open_interactive_session[wrong-interactive-type-reana_info3-True]" time="0.123"><skipped type="pytest.xfail" message="" /></testcase><testcase classname="tests.test_cli_workflows" name="test_close_interactive_session" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_multiple_specifications" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_yml_ext_specification" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_run_with_no_inputs" time="0.003" /><testcase classname="tests.test_utils" name="test_duration_pending_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_finished_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_stopped_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_running_workflow" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends0-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends1-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends2-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends3-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[htcondorcern-supported_backends4-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:baz-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar-not have an explicit tag-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:master-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:-has invalid tag-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar -contains illegal characters-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-bar-foo:bar]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo--foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-None-foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-latest-foo:latest]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_cwl" time="3.999" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_serial" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_yadage" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands0-gendata-]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0]" time="0.133" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1]" time="0.121" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2]" time="0.129" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3]" time="0.130" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4]" time="0.127" /><testcase classname="tests.test_version" name="test_version" time="0.000" /></testsuite></testsuites>
Agent log Included
[ 0.0s] 📋 System Prompt: You are a principal Python software engineer resolving a repository issue in `/workspace`.
[ 0.0s] 🎯 Task Prompt: You are evaluating a software engineering task for repository reanahub/reana-client.
[ 16.5s] 💭 (736 chars) "The user is reporting a bug where the duration of a stopped workflow is not displayed
correctly in `reana-client status ..."
[ 16.5s] 🔧 run_command grep -n "def get_workflow_duration" reana_client/utils.py
[ 16.5s] → 134:def get_workflow_duration(workflow: Dict) -> Optional[int]:
[ 21.1s] 💭 (92 chars) "Okay, the function is at line 134 of `reana_client/utils.py`. Let's read the implementation."
[ 21.1s] 📖 read_file (reana_client/utils.py)
[ 21.1s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': ' # Return the name given as
parameter without a…
[ 47.3s] 💭 (1359 chars) "The current implementation is:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("..."
[ 47.3s] 🔧 run_command grep -rn "get_workflow_duration" tests/
[ 47.4s] → tests/test_utils.py:14:from reana_client.utils import get_workflow_duration
[ 49.5s] 💭 (33 chars) "Let's read `tests/test_utils.py`."
[ 49.5s] 📖 read_file (tests/test_utils.py)
[ 49.5s] ✓ {'status': 'ok', 'filepath': 'tests/test_utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This file
is part of REANA…
[ 84.9s] 💭 (117 chars) "I will create a reproduction script to verify the bug. The bug happens when the workflow is
stopped but not finished."
[ 84.9s] 🔧 run_command (35 lines) python3 - <<'PY'
[ 85.6s] → Duration: 122064402
[ 123.5s] 💭 (2277 chars) "The reproduction script confirmed the bug. `get_workflow_duration` returned a very large
number because it used `datetim..."
[ 123.5s] 🔧 run_command grep -rn "duration" reana_client/
[ 123.6s] → reana_client/cli/workflow.py:43: get_workflow_duration,
[ 139.1s] 💭 (129 chars) "It seems `get_workflow_duration` is the only place where duration is calculated.
Let's apply the fix to `reana_client/u..."
[ 139.1s] ✏️ edit_file (reana_client/utils.py)
[ 139.2s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'occurrences': 1, 'strategy': 'exact', 'diff':
'--- a/reana_client…
[ 184.8s] 💭 (62 chars) "Now let's run the reproduction script again to verify the fix."
[ 184.8s] 🔧 run_command (73 lines) python3 - <<'PY'
[ 185.1s] → Duration: 300
[ 193.3s] 💭 (122 chars) "The reproduction tests passed. Now I should also run the existing tests in
`tests/test_utils.py` to ensure no regression..."
[ 193.3s] 🔧 run_command pytest tests/test_utils.py -q --tb=short --no-header
[ 195.2s] → ... [100%]
[ 197.7s] 💭 (75 chars) "Existing tests passed.
Now I will verify if there are any untracked files."
[ 197.7s] 🔧 run_command git status --short
[ 197.7s] → M reana_client/utils.py
[ 200.4s] 💭 (57 chars) "Everything looks clean. I'll do a final `git diff` check."
[ 200.4s] 🔧 run_command git diff
[ 200.4s] → diff --git a/reana_client/utils.py b/reana_client/utils.py
[ 203.2s] 💭 (54 chars) "The diff is minimal and correct. I am ready to submit."
[ 203.2s] 🤖 submit_patch
[ 203.3s] → submit_patch: {"status": "ok", "patch_size": 824, "files_changed": 1}
[ 215.7s] 💭 (258 chars) "Summary of changes:
Updated `reana_client/utils.py` in `get_workflow_duration` function to consider `run_stopped_at` whe..."
[ 215.7s] ✅ Agent finished: The duration of stopped workflows was incorrectly being calculated as the time from the
start of the run until the current moment, because the `get_workflow_duration` function only checked for `run_fi...
Native result row
{
"agent_error": null,
"duration_seconds": 232.85,
"error": null,
"grade": {
"collected_tests": 139,
"competition_junit_ok": true,
"error": null,
"required_issues_count": 0,
"resolved": true,
"status_counts": {
"PASSED": 138,
"SKIPPED": 1
},
"strict_clean_patch": true,
"test_exit_code": 0
},
"instance_id": "reanahub__reana-client-701",
"pass_idx": 0,
"patch_chars": 824,
"phase1_seconds": 218.44,
"repo": "reanahub/reana-client",
"request_log_path": "/kaggle-root/working/r31/rollouts_X/requests/reanahub__reana-client-701__p0__r0.jsonl",
"resolved": true,
"rollout_idx": 0,
"run_key": "reanahub__reana-client-701__p0__r0",
"strict_clean_patch": true,
"tool_calls": 11,
"total_llm_calls": 13,
"trace_path": "/kaggle-root/working/r31/rollouts_X/traces/trace_reanahub__reana-client-701__p0__r0.json"
}