ROLLOUT 6 · reanahub/reana-client
reanahub__reana-client-701
Solved
186 stotal time
10tool calls
12model calls
2,529tokens generated
96,189prompt tokens read
No error recorded
⚠ The request log has 11 model calls but the trace has 13 agent calls, so tokens are listed separately instead of beside each turn.
Turn by turn
Token shading: p ≥ 0.9 0.5 – 0.9 0.2 – 0.5 below 0.2. Hover a token for its id and probability.
System instructions 4,822 characters
You are a principal Python software engineer resolving a repository issue in `/workspace`. Your sole objective is to produce a minimal, root-cause source patch that passes every hidden fail-to-pass and pass-to-pass regression test on the first grading run. ## Critical Environment & Grader Rules 1. **Air-Gapped Sandbox & Available CLI Tools**: No network access. Never run `pip`, `uv`, `conda`, or `git fetch`. Note: `rg` (`ripgrep`) is NOT installed in the container — always use `grep -rn --include="*.py"` for fast exact searches so you never waste a tool call on `command not found`. 2. **Protected Grading Paths**: Before running official verification, the grading harness **strips and reverts all changes** to `tests/`, `test/`, `testing/`, `test_*.py`, `*_test.py`, `conftest.py`, `pyproject.toml`, `setup.cfg`, `pytest.ini`, and `tox.ini`. Every part of your fix MUST reside in non-test production source files. 3. **Untracked File Trap (`git add -N .`)**: `submit_patch` stages ALL untracked files inside `/workspace`! Never leave reproduction or scratch files inside `/workspace` — run reproductions inline via `python3 - <<'PY'` or inside `/tmp/repro.py` in a single `run_command`. 4. **Stdout Truncation Rule**: `run_command` truncates stdout after the first 5,000 characters from the TOP. Always run pytest quietly with short tracebacks: `pytest path/to/test_file.py -k pattern -q --tb=short --no-header` If a test file is large, redirect output to `/tmp/pytest.log` and inspect `tail -n 80 /tmp/pytest.log` so failure tracebacks at the bottom are never cut off. 5. **Strict Pacing Discipline**: `get_status` and `submit_patch` are free and do NOT count toward `max_tool_calls`. Target **16-22 counted tool calls total**, and **begin your first `edit_file` change no later than tool call 15**. Reserve at least 4 calls for verification, `git status --short && git diff`, and submission. ## Execution Protocol ### Phase 1 — Pinpoint Code & Tests Immediately (1-2 tool calls) - The user message already contains `Workspace Layout` — do NOT waste a turn running `ls` on top-level directories. - Run a single compound `run_command` with `grep -rn --include="*.py"` to locate: (a) the exact symbols, error strings, or functions from the problem description, (b) **all parallel or sibling implementations** (for example sync + async variants, `Client` + `AsyncClient`, serializer + deserializer, multiple backends/dialects, base + subclass methods, `__init__.py` / `__all__` exports), and (c) the closest existing unit test files under `tests/`. ### Phase 2 — Deep Read & Spec Anchor (2-5 tool calls) - Use `read_file` with generous `start_line` and `end_line` windows (180-300 lines per call so you read whole modules in fewer calls) on the target function/class, callers, type annotations, and neighboring tests. - Before editing, verify every explicit and implicit requirement from the issue: exact parameter names, defaults, boundary/domain edge cases, exception types/messages, `None` vs empty collection vs falsy (`0`, `False`, `""`) semantics, mutability/copying, and return types. ### Phase 3 — Reproduce Bug in One Call (1 tool call) - Run ONE concise command (`python3 - <<'PY' ... PY` or targeted `pytest ... -q --tb=short --no-header`) via `run_command` to observe the exact pre-fix failure. Do NOT spend multiple tool calls writing separate reproduction scripts. ### Phase 4 — Surgical Implementation Across All Parallel Paths (1-4 tool calls) - Begin editing by tool call 15! Use `edit_file` with 4-6 lines of exact surrounding context copied from `read_file`. - Update ALL parallel codepaths (sync/async, multiple classes/dialects, type hints) consistently so partial fixes do not fail sibling tests. - **2-Strike Edit Rule**: If `edit_file` fails twice on the same block due to whitespace or escaping, do not retry `edit_file` a third time — apply an atomic Python transformation via `run_command` and immediately verify `python3 -m py_compile path/to/file.py`. ### Phase 5 — Edge-Case Verification, Diff Hygiene & Clean Exit (2-4 tool calls) - Run a single compound `run_command` testing both your reproduction + boundary edge cases (`None`, empty input, leading/trailing delimiters, subdomain/prefix boundaries, subclass/async parity) AND the relevant existing `pytest` module(s) with `-q --tb=short --no-header`. - Run `git status --short && git diff` via `run_command`. Confirm: - ZERO untracked (`??`) files in `/workspace` (`rm -f` any untracked workspace files immediately), - ZERO modifications to `tests/` or protected config files (`git checkout -- tests/` if touched), - Minimal, clean diff with valid imports and indentation. - Call `submit_patch` once verification passes, then respond with a brief 2-sentence plain-text summary and make NO further tool calls.
Task prompt 6,896 characters
You are evaluating a software engineering task for repository reanahub/reana-client. Problem Statement: cli: duration of stopped workflows is not displayed correctly Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment. ```console ❯ reana-client status -w recast --include-duration --json | jq '.[0].status' "stopped" ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2598 # After a few seconds... ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2604 ``` This is very likely because in [`reana_client.utils.get_workflow_duration`](https://github.com/reanahub/reana-client/blob/5b278f131b59d3ecfd3c7f129040a126cd01b60a/reana_client/utils.py#L134) we only look at `run_finished_at`, but not at `run_stopped_at`. ## Hints: codecov[bot]: ## [Codecov](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) Report All modified and coverable lines are covered by tests :white_check_mark: > Comparison is base [(`fa5b7c7`)](https://app.codecov.io/gh/reanahub/reana-client/commit/fa5b7c76eb25bfb1591e6fae4a142d975e14b937?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.57% compared to head [(`d3925f2`)](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.62%. <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) ```diff @@ Coverage Diff @@ ## master #701 +/- ## ========================================== + Coverage 58.57% 58.62% +0.05% ========================================== Files 24 24 Lines 2390 2393 +3 ========================================== + Hits 1400 1403 +3 Misses 990 990 ``` | [Files](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) | Coverage Δ | | |---|---|---| | [reana\_client/api/client.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L2FwaS9jbGllbnQucHk=) | `45.54% <100.00%> (ø)` | | | [reana\_client/utils.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3V0aWxzLnB5) | `76.47% <100.00%> (+0.60%)` | :arrow_up: | | [reana\_client/validation/environments.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3ZhbGlkYXRpb24vZW52aXJvbm1lbnRzLnB5) | `32.50% <ø> (ø)` | | </details> giuseppe-steduto: Note for the reviewer: I chose `status` as the scope of the commit because I think that the commands affected by the PR are a nice user-facing scope for changes to the client. For example, this PR fixes `status`, `list`, and in general the commands that use the `--include-duration` flag, I chose `status` as it is the one most evidently impacted. WDYT? mdonadoni: Regarding the scope, I think `fix(status)` can be a good choice. WDYT @tiborsimko ? ## Task Budget (Session terminates when any budget is exhausted) - Time allowance: 7.5 minutes - Tool calls allowance: 30 calls - Max loop iterations: 40 turns ## Execution Environment Rules - Single command timeout: 90 seconds (commands exceeding this fail without ending the session) - Command output limit: 5000 characters - File view limit: 150 lines per read_file call - File character limit: 10000 characters per read_file call - Environment is offline (no network/PyPI access). All repository and test dependencies are ALREADY pre-installed. Do NOT attempt to run pip install or download packages. ## Instructions: 0. All source code is under `/workspace`. Do NOT search outside `/workspace` (e.g. `/usr/`, `/wheels/`, system site-packages). If imports fail, the issue is in the source code under `/workspace`, not in missing system packages. 1. Analyze the problem statement and any provided hints carefully to identify all requested script paths, CLI subcommands, or Python modules. 2. Inspect existing codebase conventions and test files before making edits. 3. Verify your implementation using targeted tests or inline assertions before submitting. 4. Call submit_patch only after your implementation is complete and verified. 5. As your final action, you must return a text-only response reporting your completion to terminate the session. ## Workspace Layout The repository is located at `/workspace`. Here is the directory tree (up to 3 levels): ``` ./AUTHORS.rst ./CHANGELOG.md ./CHANGES.rst ./CONTRIBUTING.rst ./LICENSE ./MANIFEST.in ./README.rst ./docs ./pytest.ini ./reana_client ./reana_client/__init__.py ./reana_client/api ./reana_client/api/__init__.py ./reana_client/api/client.py ./reana_client/api/utils.py ./reana_client/cli ./reana_client/cli/__init__.py ./reana_client/cli/cwl_runner.py ./reana_client/cli/files.py ./reana_client/cli/ping.py ./reana_client/cli/quotas.py ./reana_client/cli/retention_rules.py ./reana_client/cli/secrets.py ./reana_client/cli/utils.py ./reana_client/cli/workflow.py ./reana_client/config.py ./reana_client/errors.py ./reana_client/printer.py ./reana_client/utils.py ./reana_client/validation ./reana_client/validation/__init__.py ./reana_client/validation/compute_backends.py ./reana_client/validation/environments.py ./reana_client/validation/parameters.py ./reana_client/validation/utils.py ./reana_client/validation/workspace.py ./reana_client/version.py ./requirements-dev.txt ./run-tests.sh ./scripts ./scripts/create-appimage.sh ./scripts/generate_cli_api.py ./setup.cfg ./setup.py ./tests ./tox.ini ```
Turn 1at 16 s207 tokens out4,359 prompt tokens
The problem is that when a workflow is "stopped", the duration is calculated as the time from the start until now, rather than from the start until it was stopped. The issue statement points to `reana_client.utils.get_workflow_duration`. It says it only looks at `run_finished_at` but not at `run_stopped_at`. I need to: 1. Examine `reana_client/utils.py` and the `get_workflow_duration` function. 2. Understand how `run_finished_at` and `run_stopped_at` are used. 3. Implement a fix to handle the "stopped" status by using `run_stopped_at` if available. 4. Verify the fix. Let's start by exploring the code.
TOOL CALL · run_command
{
"command": "grep -rn --include=\"*.py\" \"get_workflow_duration\" ."
}Result of run_command 748 characters
{
"status": "ok",
"stdout": "./reana_client/cli/workflow.py:43: get_workflow_duration,\n./reana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\n./reana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\n./reana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\n./tests/test_utils.py:14:from reana_client.utils import get_workflow_duration\n./tests/test_utils.py:24: assert get_workflow_duration(workflow) is None\n./tests/test_utils.py:34: assert get_workflow_duration(workflow) == 60 + 11\n./tests/test_utils.py:49: assert get_workflow_duration(workflow) == 60 + 11\n",
"stderr": "",
"exit_code": 0
}Turn 2at 24 s113 tokens out4,847 prompt tokens
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` and used in `reana_client/cli/workflow.py`. It's also tested in `tests/test_utils.py`. Let's read `reana_client/utils.py` around line 134.
TOOL CALL · read_file
{
"end_line": 160,
"filepath": "reana_client/utils.py",
"start_line": 120
}Result of read_file 1,674 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": " # `workflow_name` was split, so it is a dot-separated string\n # but it didn't contain a valid `run_number`.\n # Assume that this dot-separated string is the name of\n # the workflow and return just this without a `run_number`.\n return workflow_name, \"\"\n\n return name, run_number\n\n except ValueError:\n # Couldn't split. Probably not a dot-separated string.\n # Return the name given as parameter without a `run_number`.\n return workflow_name, \"\"\n\n\ndef get_workflow_duration(workflow: Dict) -> Optional[int]:\n \"\"\"Calculate the duration of the workflow.\n\n :param workflow: Workflow details returned by the server.\n :return: The duration of the workflow in seconds or ``None`` if the starting\n time is not present.\n \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n",
"start_line": 120,
"end_line": 160,
"total_lines": 277,
"is_truncated": false
}Turn 3at 46 s278 tokens out5,468 prompt tokens
The current implementation:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`. This is exactly what the issue describes: for a stopped workflow (which might not have `run_finished_at` but might have `run_stopped_at`), it uses the current time.
I should check if `run_stopped_at` is available in the `progress` dict.
Let's look at the tests in `tests/test_utils.py` to see how it's currently tested.
TOOL CALL · read_file
{
"filepath": "tests/test_utils.py"
}Result of read_file 1,574 characters
{
"status": "ok",
"filepath": "tests/test_utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\n\"\"\"REANA client utils tests.\"\"\"\n\nfrom unittest.mock import patch\nfrom datetime import datetime\n\nfrom reana_client.utils import get_workflow_duration\n\n\ndef test_duration_pending_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": None,\n \"run_finished_at\": None,\n }\n }\n assert get_workflow_duration(workflow) is None\n\n\ndef test_duration_finished_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": \"2022-06-16T14:43:22\",\n }\n }\n assert get_workflow_duration(workflow) == 60 + 11\n\n\ndef test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11",
"start_line": 1,
"end_line": 49,
"total_lines": 49,
"is_truncated": false
}Turn 4at 50 s65 tokens out6,301 prompt tokens
Wait, `datetime` is imported in `reana_client/utils.py`. I should check how it's imported there.
TOOL CALL · read_file
{
"end_line": 40,
"filepath": "reana_client/utils.py",
"start_line": 1
}Result of read_file 1,356 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2017, 2018, 2019, 2020, 2021, 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\"\"\"REANA client utils.\"\"\"\n\nimport base64\nfrom datetime import datetime\nimport logging\nimport os\nimport pathlib\nimport sys\nimport traceback\nfrom typing import Dict, Optional\nfrom uuid import UUID\n\nfrom reana_commons.utils import get_workflow_status_change_verb\nfrom reana_commons.specification import load_reana_spec\n\nfrom reana_client.config import reana_yaml_valid_file_names\nfrom reana_client.printer import display_message\nfrom reana_client.validation.utils import validate_reana_spec\n\n\ndef workflow_uuid_or_name(ctx, param, value):\n \"\"\"Get UUID of workflow from configuration / cache file based on name.\"\"\"\n if not value:\n display_message(\n \"Workflow name must be provided either with \"\n \"`--workflow` option or with REANA_WORKON \"\n \"environment variable\",\n msg_type=\"error\",\n )\n sys.exit(1)\n else:\n return value\n",
"start_line": 1,
"end_line": 40,
"total_lines": 277,
"is_truncated": false
}Turn 5at 77 s390 tokens out6,808 prompt tokens
It's `from datetime import datetime`. The fix should be: If `run_finished_at` is present, use it. Else if `run_stopped_at` is present, use it. Else, use `datetime.utcnow()`. Wait, if the workflow is stopped, `run_finished_at` might be `None`. Let's create a reproduction test case in a new file `/tmp/repro.py` to verify the bug and then the fix.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:43:22\",\n }\n }\n # The duration should be 60 + 11 = 71 seconds\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n # Currently it will likely be much larger because it uses datetime.utcnow()\n assert duration == 60 + 11\n\nif __name__ == \"__main__\":\n try:\n test_duration_stopped_workflow()\n print(\"Test passed!\")\n except AssertionError as e:\n print(f\"Test failed: {e}\")\n except Exception as e:\n print(f\"An error occurred: {e}\")\nPY\n"
}Result of run_command 431 characters
{
"status": "ok",
"stdout": "Duration: 139241090\nTest failed: \n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 6at 109 s743 tokens out7,365 prompt tokens
The test failed as expected. The duration was `139241090`, which is the time from 2022 to now.
Now let's implement the fix. I need to check for `run_stopped_at` in `get_workflow_duration`.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
"""Calculate the duration of the workflow.
:param workflow: Workflow details returned by the server.
:return: The duration of the workflow in seconds or ``None`` if the starting
time is not present.
"""
# FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at") # Added this
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at: # Added this
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
Let's apply the fix.
TOOL CALL · edit_file
{
"filepath": "reana_client/utils.py",
"new_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n run_stopped_at = progress.get(\"run_stopped_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n",
"old_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n"
}Result of edit_file 828 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"occurrences": 1,
"strategy": "exact",
"diff": "--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"is_truncated": false
}Turn 7at 121 s280 tokens out8,404 prompt tokens
Now let's run the reproduction script again to verify the fix.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_duration_stopped_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:43:22\",\n }\n }\n # The duration should be 60 + 11 = 71 seconds\n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n assert duration == 60 + 11\n\nif __name__ == \"__main__\":\n try:\n test_duration_stopped_workflow()\n print(\"Test passed!\")\n except AssertionError as e:\n print(f\"Test failed: {e}\")\n except Exception as e:\n print(f\"An error occurred: {e}\")\nPY\n"
}Result of run_command 423 characters
{
"status": "ok",
"stdout": "Duration: 71\nTest passed!\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 8at 129 s67 tokens out8,843 prompt tokens
The reproduction script now passes. Let's run the existing tests in `tests/test_utils.py` to make sure we haven't broken anything.
TOOL CALL · run_command
{
"command": "pytest tests/test_utils.py -q --tb=short --no-header"
}Result of run_command 2,957 characters
{
"status": "ok",
"stdout": "... [100%]\n\n---------- coverage: platform linux, python 3.10.19-final-0 ----------\nName Stmts Miss Cover Missing\n---------------------------------------------------------------------------\nreana_client/__init__.py 4 0 100%\nreana_client/api/__init__.py 2 2 0% 9-11\nreana_client/api/client.py 415 415 0% 8-1282\nreana_client/api/utils.py 9 9 0% 8-19\nreana_client/cli/__init__.py 47 47 0% 8-97\nreana_client/cli/cwl_runner.py 159 159 0% 8-265\nreana_client/cli/files.py 306 306 0% 8-649\nreana_client/cli/ping.py 60 60 0% 8-130\nreana_client/cli/quotas.py 41 41 0% 8-116\nreana_client/cli/retention_rules.py 28 28 0% 8-73\nreana_client/cli/secrets.py 73 73 0% 8-160\nreana_client/cli/utils.py 183 183 0% 8-408\nreana_client/cli/workflow.py 579 579 0% 8-1459\nreana_client/config.py 35 0 100%\nreana_client/errors.py 4 0 100%\nreana_client/printer.py 17 13 24% 31-62\nreana_client/utils.py 120 78 35% 30-39, 57-78, 84-89, 94-98, 114-131, 157, 166-185, 194, 206-224, 234-251, 256-257, 262-280\nreana_client/validation/__init__.py 1 0 100%\nreana_client/validation/compute_backends.py 14 7 50% 29-39\nreana_client/validation/environments.py 200 167 16% 42-62, 74-77, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 186-221, 225-244, 249-308, 312-373, 380-395, 399, 407-410, 419-429, 434-462, 471-484, 492-503\nreana_client/validation/parameters.py 31 19 39% 26-37, 42-44, 49, 58, 67, 75-79\nreana_client/validation/utils.py 64 48 25% 38-109, 118-131, 136-144, 151-155\nreana_client/validation/workspace.py 15 8 47% 31-45\nreana_client/version.py 3 0 100%\n---------------------------------------------------------------------------\nTOTAL 2410 2242 7%\nCoverage XML written to file coverage.xml\n\n3 passed in 0.29s\n",
"stderr": "/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 9at 141 s93 tokens out10,067 prompt tokens
Existing tests pass. I should also check if there are any other places where workflow duration is calculated, just in case. `grep` showed `reana_client/cli/workflow.py` calling `get_workflow_duration`. Let's check if any other functions calculate duration.
TOOL CALL · run_command
{
"command": "grep -rn \"duration\" reana_client/ | grep \".py\""
}Result of run_command 2,081 characters
{
"status": "ok",
"stdout": "reana_client/cli/workflow.py:43: get_workflow_duration,\nreana_client/cli/workflow.py:108: \"progress, duration.\",\nreana_client/cli/workflow.py:126: \"--include-duration\",\nreana_client/cli/workflow.py:127: \"include_duration\",\nreana_client/cli/workflow.py:130: help=\"Include the duration of the workflows in seconds. In case a workflow is in \"\nreana_client/cli/workflow.py:131: \"progress, its duration as of now will be shown.\",\nreana_client/cli/workflow.py:172: include_duration: bool,\nreana_client/cli/workflow.py:225: duration_header = [\"duration\"]\nreana_client/cli/workflow.py:243: if verbose or include_duration:\nreana_client/cli/workflow.py:244: headers[type] += duration_header\nreana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\nreana_client/cli/workflow.py:688: \"--include-duration\",\nreana_client/cli/workflow.py:689: \"include_duration\",\nreana_client/cli/workflow.py:692: help=\"Include the duration of the workflow in seconds. In case the workflow is in \"\nreana_client/cli/workflow.py:693: \"progress, its duration as of now will be shown.\",\nreana_client/cli/workflow.py:700: ctx, workflow, _format, output_format, include_duration, access_token, verbose\nreana_client/cli/workflow.py:794: if verbose or include_duration:\nreana_client/cli/workflow.py:795: headers += [\"duration\"]\nreana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\nreana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\nreana_client/utils.py:135: \"\"\"Calculate the duration of the workflow.\nreana_client/utils.py:138: :return: The duration of the workflow in seconds or ``None`` if the starting\nreana_client/utils.py:151: duration = None\nreana_client/utils.py:160: duration = round((end_time - start_time).total_seconds())\nreana_client/utils.py:161: return duration\n",
"stderr": "",
"exit_code": 0
}Turn 10at 152 s160 tokens out10,882 prompt tokens
It seems `get_workflow_duration` is the central place where duration is calculated.
Let's double check the `reana_client/cli/workflow.py` usage.
Line 251:
```python
workflow["duration"] = get_workflow_duration(workflow)
```
Line 796:
```python
data[-1] += [get_workflow_duration(workflow_response) or "-"]
```
Both use `get_workflow_duration`.
I think I'm done. I'll just check `git status` and `git diff` to make sure everything is clean.
TOOL CALL · run_command
{
"command": "git status --short && git diff"
}Result of run_command 938 characters
{
"status": "ok",
"stdout": " M reana_client/utils.py\ndiff --git a/reana_client/utils.py b/reana_client/utils.py\nindex b8596bf..c19ac20 100644\n--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"stderr": "",
"exit_code": 0
}Turn 11at 156 s24 tokens out11,391 prompt tokens
The diff looks correct and minimal. No untracked files.
TOOL CALL · submit_patch
Result of submit_patch 55 characters
{
"status": "ok",
"patch_size": 824,
"files_changed": 1
}Turn 12at 169 s109 tokens out11,454 prompt tokens
I have successfully fixed the issue where the duration of stopped workflows was calculated using the current time instead of the stop time. I verified the fix with a reproduction script and existing tests.
Turn 13at 169 s
The duration of stopped workflows was incorrectly calculated using the current time instead of the stop time in `reana_client.utils.get_workflow_duration`. I updated the function to use `run_stopped_at` as the end time if `run_finished_at` is unavailable, ensuring that the duration for stopped workflows remains constant.
Model calls (not matched to turns)
Generated tokens 207 tokens · stopped: STOP
The problem is that when a workflow is "stopped", the duration is calculated as the time from the start until now, rather than from the start until it was stopped. The issue statement points to `reana_client.utils.get_workflow_duration`. It says it only looks at `run_finished_at` but not at `run_stopped_at`. I need to: 1. Examine `reana_client/utils.py` and the `get_workflow_duration` function. 2. Understand how `run_finished_at` and `run_stopped_at` are used. 3. Implement a fix to handle the "stopped" status by using `run_stopped_at` if available. 4. Verify the fix. Let's start by exploring the code.
<|channel>thought
The problem is that when a workflow is "stopped", the duration is calculated as the time from the start until now, rather than from the start until it was stopped.
The issue statement points to `reana_client.utils.get_workflow_duration`. It says it only looks at `run_finished_at` but not at `run_stopped_at`.
I need to:
1. Examine `reana_client/utils.py` and the `get_workflow_duration` function.
2. Understand how `run_finished_at` and `run_stopped_at` are used.
3. Implement a fix to handle the "stopped" status by using `run_stopped_at` if available.
4. Verify the fix.
Let's start by exploring the code.<channel|><|tool_call>call:run_command{command:<|"|>grep -rn --include="*.py" "get_workflow_duration" .<|"|>}<tool_call|><|tool_response>
Generated tokens 113 tokens · stopped: STOP
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` and used in `reana_client/cli/workflow.py`. It's also tested in `tests/test_utils.py`. Let's read `reana_client/utils.py` around line 134.
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` and used in `reana_client/cli/workflow.py`. It's also tested in `tests/test_utils.py`.
Let's read `reana_client/utils.py` around line 134.<channel|><|tool_call>call:read_file{end_line:160,filepath:<|"|>reana_client/utils.py<|"|>,start_line:120}<tool_call|><|tool_response>
Generated tokens 278 tokens · stopped: STOP
The current implementation:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`. This is exactly what the issue describes: for a stopped workflow (which might not have `run_finished_at` but might have `run_stopped_at`), it uses the current time.
I should check if `run_stopped_at` is available in the `progress` dict.
Let's look at the tests in `tests/test_utils.py` to see how it's currently tested.
The current implementation:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
If `run_finished_at` is missing, it uses `datetime.utcnow()`. This is exactly what the issue describes: for a stopped workflow (which might not have `run_finished_at` but might have `run_stopped_at`), it uses the current time.
I should check if `run_stopped_at` is available in the `progress` dict.
Let's look at the tests in `tests/test_utils.py` to see how it's currently tested.
<channel|><|tool_call>call:read_file{filepath:<|"|>tests/test_utils.py<|"|>}<tool_call|><|tool_response>
Generated tokens 65 tokens · stopped: STOP
Wait, `datetime` is imported in `reana_client/utils.py`. I should check how it's imported there.
Wait, `datetime` is imported in `reana_client/utils.py`. I should check how it's imported there.
<channel|><|tool_call>call:read_file{end_line:40,filepath:<|"|>reana_client/utils.py<|"|>,start_line:1}<tool_call|><|tool_response>
Generated tokens 390 tokens · stopped: STOP
It's `from datetime import datetime`. The fix should be: If `run_finished_at` is present, use it. Else if `run_stopped_at` is present, use it. Else, use `datetime.utcnow()`. Wait, if the workflow is stopped, `run_finished_at` might be `None`. Let's create a reproduction test case in a new file `/tmp/repro.py` to verify the bug and then the fix.
It's `from datetime import datetime`.
The fix should be:
If `run_finished_at` is present, use it.
Else if `run_stopped_at` is present, use it.
Else, use `datetime.utcnow()`.
Wait, if the workflow is stopped, `run_finished_at` might be `None`.
Let's create a reproduction test case in a new file `/tmp/repro.py` to verify the bug and then the fix.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# The duration should be 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# Currently it will likely be much larger because it uses datetime.utcnow()
assert duration == 60 + 11
if __name__ == "__main__":
try:
test_duration_stopped_workflow()
print("Test passed!")
except AssertionError as e:
print(f"Test failed: {e}")
except Exception as e:
print(f"An error occurred: {e}")
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 743 tokens · stopped: STOP
The test failed as expected. The duration was `139241090`, which is the time from 2022 to now.
Now let's implement the fix. I need to check for `run_stopped_at` in `get_workflow_duration`.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
"""Calculate the duration of the workflow.
:param workflow: Workflow details returned by the server.
:return: The duration of the workflow in seconds or ``None`` if the starting
time is not present.
"""
# FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at") # Added this
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at: # Added this
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
Let's apply the fix.The test failed as expected. The duration was `139241090`, which is the time from 2022 to now.
Now let's implement the fix. I need to check for `run_stopped_at` in `get_workflow_duration`.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
"""Calculate the duration of the workflow.
:param workflow: Workflow details returned by the server.
:return: The duration of the workflow in seconds or ``None`` if the starting
time is not present.
"""
# FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at") # Added this
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at: # Added this
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
Let's apply the fix.<channel|><|tool_call>call:edit_file{filepath:<|"|>reana_client/utils.py<|"|>,new_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
<|"|>,old_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
<|"|>}<tool_call|><|tool_response>
Generated tokens 280 tokens · stopped: STOP
Now let's run the reproduction script again to verify the fix.
Now let's run the reproduction script again to verify the fix.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_duration_stopped_workflow():
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# The duration should be 60 + 11 = 71 seconds
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
assert duration == 60 + 11
if __name__ == "__main__":
try:
test_duration_stopped_workflow()
print("Test passed!")
except AssertionError as e:
print(f"Test failed: {e}")
except Exception as e:
print(f"An error occurred: {e}")
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 67 tokens · stopped: STOP
The reproduction script now passes. Let's run the existing tests in `tests/test_utils.py` to make sure we haven't broken anything.
The reproduction script now passes. Let's run the existing tests in `tests/test_utils.py` to make sure we haven't broken anything.
<channel|><|tool_call>call:run_command{command:<|"|>pytest tests/test_utils.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Generated tokens 93 tokens · stopped: STOP
Existing tests pass. I should also check if there are any other places where workflow duration is calculated, just in case. `grep` showed `reana_client/cli/workflow.py` calling `get_workflow_duration`. Let's check if any other functions calculate duration.
Existing tests pass.
I should also check if there are any other places where workflow duration is calculated, just in case. `grep` showed `reana_client/cli/workflow.py` calling `get_workflow_duration`.
Let's check if any other functions calculate duration.
<channel|><|tool_call>call:run_command{command:<|"|>grep -rn "duration" reana_client/ | grep ".py"<|"|>}<tool_call|><|tool_response>
Generated tokens 160 tokens · stopped: STOP
It seems `get_workflow_duration` is the central place where duration is calculated.
Let's double check the `reana_client/cli/workflow.py` usage.
Line 251:
```python
workflow["duration"] = get_workflow_duration(workflow)
```
Line 796:
```python
data[-1] += [get_workflow_duration(workflow_response) or "-"]
```
Both use `get_workflow_duration`.
I think I'm done. I'll just check `git status` and `git diff` to make sure everything is clean.
It seems `get_workflow_duration` is the central place where duration is calculated.
Let's double check the `reana_client/cli/workflow.py` usage.
Line 251:
```python
workflow["duration"] = get_workflow_duration(workflow)
```
Line 796:
```python
data[-1] += [get_workflow_duration(workflow_response) or "-"]
```
Both use `get_workflow_duration`.
I think I'm done. I'll just check `git status` and `git diff` to make sure everything is clean.
<channel|><|tool_call>call:run_command{command:<|"|>git status --short && git diff<|"|>}<tool_call|><|tool_response>
Generated tokens 24 tokens · stopped: STOP
The diff looks correct and minimal. No untracked files.
The diff looks correct and minimal. No untracked files.
<channel|><|tool_call>call:submit_patch{}<tool_call|><|tool_response>
Patch, tests and logs
Final code change Included
diff --git a/reana_client/utils.py b/reana_client/utils.py
index b8596bf..c19ac20 100644
--- a/reana_client/utils.py
+++ b/reana_client/utils.py
@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
Test output Included
============================= test session starts ============================== collected 139 items tests/test_cli_files.py ................... [ 13%] tests/test_cli_ping.py .... [ 16%] tests/test_cli_retention_rules.py . [ 17%] tests/test_cli_secrets.py ......... [ 23%] tests/test_cli_workflows.py ............................................ [ 55%] ...x.... [ 61%] tests/test_utils.py .... [ 64%] tests/test_validate_compute_backends.py .................... [ 78%] tests/test_validate_environments.py ................ [ 89%] tests/test_validate_parameters.py ........ [ 95%] tests/test_validate_server_capabilities.py ..... [ 99%] tests/test_version.py . [100%] ==================================== PASSES ==================================== _____________ test_create_snakemake_workflow_from_json_parameters ______________ ----------------------------- Captured stdout call ----------------------------- Building DAG of jobs... Job stats: job count ----- ------- foo 1 total 1 ------------------------------ Captured log call ------------------------------- WARNING snakemake.logging:logging.py:580 Building DAG of jobs... WARNING snakemake.logging:logging.py:590 Job stats: job count ----- ------- foo 1 total 1 _________________________ test_validate_parameters_cwl _________________________ ----------------------------- Captured stderr call ----------------------------- /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools - generated xml file: /tmp/rebench-grade-8962d3a1e6e643ffa33c620fcb2cbcde.xml -- ---------- coverage: platform linux, python 3.10.19-final-0 ---------- Name Stmts Miss Cover Missing --------------------------------------------------------------------------- reana_client/__init__.py 4 0 100% reana_client/api/__init__.py 2 0 100% reana_client/api/client.py 415 226 46% 57, 63-71, 84-105, 155-170, 190-205, 229-244, 286, 288, 290, 293, 303, 328-343, 367-382, 411-427, 442-469, 507-525, 554, 560-567, 598-613, 629, 631-634, 640-641, 646, 649-650, 655-665, 677, 686-692, 711-726, 738-760, 776-811, 825-850, 869-896, 923-937, 956-970, 995-1010, 1039-1054, 1080, 1096-1098, 1116-1136, 1154-1169, 1190-1205, 1220-1244, 1269-1282 reana_client/api/utils.py 9 0 100% reana_client/cli/__init__.py 47 18 62% 60-77 reana_client/cli/cwl_runner.py 159 159 0% 8-265 reana_client/cli/files.py 306 74 76% 45, 159-168, 221-236, 257, 265-280, 282, 322-328, 336-342, 350-354, 373-374, 404-405, 411-412, 421-438, 440, 490-497, 530-534, 577-584, 643-649 reana_client/cli/ping.py 60 22 63% 25, 67-74, 87, 112-130 reana_client/cli/quotas.py 41 22 46% 30, 72-116 reana_client/cli/retention_rules.py 28 5 82% 29, 64-67 reana_client/cli/secrets.py 73 18 75% 30, 85-91, 113-127, 154-160 reana_client/cli/utils.py 183 52 72% 162, 165-166, 186-190, 193, 197-203, 211-212, 257-258, 288-294, 300-304, 322-328, 340-408 reana_client/cli/workflow.py 579 210 64% 60, 67, 369-370, 388-395, 488-497, 589-668, 718, 726, 731, 749-751, 761-765, 770-773, 800-808, 844-937, 1003-1011, 1013-1020, 1022-1028, 1054-1080, 1207-1235, 1277-1336, 1342, 1412-1421, 1450-1459 reana_client/config.py 35 0 100% reana_client/errors.py 4 0 100% reana_client/printer.py 17 2 88% 41-47 reana_client/utils.py 120 29 76% 31-37, 74, 78, 89, 97, 119-124, 128-131, 166-185, 244-251, 280 reana_client/validation/__init__.py 1 0 100% reana_client/validation/compute_backends.py 14 3 79% 32-38 reana_client/validation/environments.py 200 135 32% 42-62, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 225-244, 249-308, 325, 328-338, 341-363, 380-395, 407-410, 419-429, 434-462, 471-484, 492-503 reana_client/validation/parameters.py 31 0 100% reana_client/validation/utils.py 64 17 73% 39-47, 56, 62-81, 87, 105-109 reana_client/validation/workspace.py 15 0 100% reana_client/version.py 3 0 100% --------------------------------------------------------------------------- TOTAL 2410 992 59% Coverage XML written to file coverage.xml =========================== short test summary info ============================ PASSED tests/test_cli_files.py::test_list_files_server_not_reachable PASSED tests/test_cli_files.py::test_list_files_server_no_token PASSED tests/test_cli_files.py::test_list_files_ok PASSED tests/test_cli_files.py::test_list_files_url PASSED tests/test_cli_files.py::test_download_file PASSED tests/test_cli_files.py::test_download_file_stdout PASSED tests/test_cli_files.py::test_download_multiple_files_stdout PASSED tests/test_cli_files.py::test_upload_file PASSED tests/test_cli_files.py::test_upload_file_respect_gitignore PASSED tests/test_cli_files.py::test_upload_file_skip_empty_git_and_reana_ignore_files PASSED tests/test_cli_files.py::test_upload_file_respect_reanaignore_and_gitignore PASSED tests/test_cli_files.py::test_delete_file PASSED tests/test_cli_files.py::test_delete_non_existing_file PASSED tests/test_cli_files.py::test_move_files PASSED tests/test_cli_files.py::test_list_files_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_valid_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_invalid_filter PASSED tests/test_cli_files.py::test_list_files_filter_with_filename PASSED tests/test_cli_files.py::test_prune_workspace PASSED tests/test_cli_ping.py::test_ping_token_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_reachable PASSED tests/test_cli_ping.py::test_ping_ok PASSED tests/test_cli_retention_rules.py::test_retention_rules_list PASSED tests/test_cli_secrets.py::test_secrets_list_server_not_reachable PASSED tests/test_cli_secrets.py::test_secrets_list_server_no_token PASSED tests/test_cli_secrets.py::test_secrets_list_ok PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reanauser] PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reana=user] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[wrongformat] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[PASS:123] PASSED tests/test_cli_secrets.py::test_secrets_add_already_exist PASSED tests/test_cli_secrets.py::test_secrets_delete PASSED tests/test_cli_workflows.py::test_workflows_server_not_connected PASSED tests/test_cli_workflows.py::test_workflows_no_token PASSED tests/test_cli_workflows.py::test_workflows_server_ok PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options0-expected_status_filter0] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options1-expected_status_filter1] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options2-expected_status_filter2] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options3-expected_status_filter3] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options4-expected_status_filter4] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options5-expected_status_filter5] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options6-expected_status_filter6] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options7-expected_status_filter7] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options8-expected_status_filter8] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ] PASSED tests/test_cli_workflows.py::test_workflows_sessions PASSED tests/test_cli_workflows.py::test_workflows_valid_json PASSED tests/test_cli_workflows.py::test_workflows_include_progress PASSED tests/test_cli_workflows.py::test_workflows_without_include_progress PASSED tests/test_cli_workflows.py::test_workflows_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_without_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_format PASSED tests/test_cli_workflows.py::test_workflows_filter PASSED tests/test_cli_workflows.py::test_workflow_create_failed PASSED tests/test_cli_workflows.py::test_workflow_create_successful PASSED tests/test_cli_workflows.py::test_workflow_create_not_valid_name PASSED tests/test_cli_workflows.py::test_create_workflow_from_json PASSED tests/test_cli_workflows.py::test_create_snakemake_workflow_from_json_parameters PASSED tests/test_cli_workflows.py::test_workflow_start_successful[created-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[pending-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[queued-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[running-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[deleted-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[queued-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[pending-deleted-1] PASSED tests/test_cli_workflows.py::test_workflows_validate PASSED tests/test_cli_workflows.py::test_get_workflow_status_ok PASSED tests/test_cli_workflows.py::test_run PASSED tests/test_cli_workflows.py::test_workflow_input_parameters PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info0-True] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info1-False] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info2-False] PASSED tests/test_cli_workflows.py::test_close_interactive_session PASSED tests/test_cli_workflows.py::test_multiple_specifications PASSED tests/test_cli_workflows.py::test_yml_ext_specification PASSED tests/test_cli_workflows.py::test_run_with_no_inputs PASSED tests/test_utils.py::test_duration_pending_workflow PASSED tests/test_utils.py::test_duration_finished_workflow PASSED tests/test_utils.py::test_duration_stopped_workflow PASSED tests/test_utils.py::test_duration_running_workflow PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:baz-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar-not have an explicit tag-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:master-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar -contains illegal characters-True] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-bar-foo:bar] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo--foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-None-foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-latest-foo:latest] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7] PASSED tests/test_validate_parameters.py::test_validate_parameters_cwl PASSED tests/test_validate_parameters.py::test_validate_parameters_serial PASSED tests/test_validate_parameters.py::test_validate_parameters_yadage PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands0-gendata-] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4] PASSED tests/test_version.py::test_version XFAIL tests/test_cli_workflows.py::test_open_interactive_session[wrong-interactive-type-reana_info3-True] ======================= 138 passed, 1 xfailed in 11.62s ========================
Test errors Included
/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources
Test report (JUnit) Included
<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="1" tests="139" time="11.619" timestamp="2026-11-14T04:48:37.193219" hostname="e6e26be28b68"><testcase classname="tests.test_cli_files" name="test_list_files_server_not_reachable" time="0.002" /><testcase classname="tests.test_cli_files" name="test_list_files_server_no_token" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_ok" time="0.132" /><testcase classname="tests.test_cli_files" name="test_list_files_url" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file_stdout" time="0.002" /><testcase classname="tests.test_cli_files" name="test_download_multiple_files_stdout" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_gitignore" time="0.002" /><testcase classname="tests.test_cli_files" name="test_upload_file_skip_empty_git_and_reana_ignore_files" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_reanaignore_and_gitignore" time="0.004" /><testcase classname="tests.test_cli_files" name="test_delete_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_delete_non_existing_file" time="0.122" /><testcase classname="tests.test_cli_files" name="test_move_files" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_filter" time="0.122" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_valid_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_invalid_filter" time="0.122" /><testcase classname="tests.test_cli_files" name="test_list_files_filter_with_filename" time="0.122" /><testcase classname="tests.test_cli_files" name="test_prune_workspace" time="0.167" /><testcase classname="tests.test_cli_ping" name="test_ping_token_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_reachable" time="0.124" /><testcase classname="tests.test_cli_ping" name="test_ping_ok" time="0.122" /><testcase classname="tests.test_cli_retention_rules" name="test_retention_rules_list" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_not_reachable" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_no_token" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_ok" time="0.121" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reanauser]" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reana=user]" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[wrongformat]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[PASS:123]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_already_exist" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_delete" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_not_connected" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_no_token" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_ok" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options0-expected_status_filter0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options1-expected_status_filter1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options2-expected_status_filter2]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options3-expected_status_filter3]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options4-expected_status_filter4]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options5-expected_status_filter5]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options6-expected_status_filter6]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options7-expected_status_filter7]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options8-expected_status_filter8]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sessions" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_valid_json" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_progress" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_progress" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_workspace_size" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_workspace_size" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_format" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflows_filter" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_failed" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_successful" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_not_valid_name" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_create_workflow_from_json" time="0.126" /><testcase classname="tests.test_cli_workflows" name="test_create_snakemake_workflow_from_json_parameters" time="0.313" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[created-0]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[pending-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[queued-0]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[running-0]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[finished-0]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[failed-1]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[deleted-1]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[stopped-1]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-failed-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-stopped-1]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[queued-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[pending-deleted-1]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflows_validate" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_get_workflow_status_ok" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_run" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_input_parameters" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info0-True]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info1-False]" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info2-False]" time="0.125" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[wrong-interactive-type-reana_info3-True]" time="0.125"><skipped type="pytest.xfail" message="" /></testcase><testcase classname="tests.test_cli_workflows" name="test_close_interactive_session" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_multiple_specifications" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_yml_ext_specification" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_run_with_no_inputs" time="0.003" /><testcase classname="tests.test_utils" name="test_duration_pending_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_finished_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_stopped_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_running_workflow" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends0-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends1-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends2-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends3-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[htcondorcern-supported_backends4-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:baz-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar-not have an explicit tag-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:master-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:-has invalid tag-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar -contains illegal characters-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-bar-foo:bar]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo--foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-None-foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-latest-foo:latest]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_cwl" time="4.019" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_serial" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_yadage" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands0-gendata-]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0]" time="0.129" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1]" time="0.122" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2]" time="0.129" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3]" time="0.131" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4]" time="0.130" /><testcase classname="tests.test_version" name="test_version" time="0.000" /></testsuite></testsuites>
Agent log Included
[ 0.0s] 📋 System Prompt: You are a principal Python software engineer resolving a repository issue in `/workspace`.
[ 0.0s] 🎯 Task Prompt: You are evaluating a software engineering task for repository reanahub/reana-client.
[ 15.4s] 💭 (610 chars) "The problem is that when a workflow is "stopped", the duration is calculated as the time
from the start until now, rathe..."
[ 15.4s] 🔧 run_command grep -rn --include="*.py" "get_workflow_duration" .
[ 15.4s] → ./reana_client/cli/workflow.py:43: get_workflow_duration,
[ 23.4s] 💭 (207 chars) "Okay, `get_workflow_duration` is defined in `reana_client/utils.py` and used in
`reana_client/cli/workflow.py`. It's als..."
[ 23.4s] 📖 read_file (reana_client/utils.py)
[ 23.4s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': ' # `workflow_name` was
split, so it is a do…
[ 45.5s] 💭 (893 chars) "The current implementation:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run..."
[ 45.5s] 📖 read_file (tests/test_utils.py)
[ 45.6s] ✓ {'status': 'ok', 'filepath': 'tests/test_utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This file
is part of REANA…
[ 49.4s] 💭 (96 chars) "Wait, `datetime` is imported in `reana_client/utils.py`. I should check how it's imported
there."
[ 49.4s] 📖 read_file (reana_client/utils.py)
[ 49.5s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This
file is part of REA…
[ 76.4s] 💭 (349 chars) "It's `from datetime import datetime`.
The fix should be:
If `run_finished_at` is present, use it.
Else if `run_stopped_..."
[ 76.4s] 🔧 run_command (27 lines) python3 - <<'PY'
[ 77.2s] → Duration: 139241090
[ 108.5s] 💭 (1323 chars) "The test failed as expected. The duration was `139241090`, which is the time from 2022 to
now.
Now let's implement the ..."
[ 108.5s] ✏️ edit_file (reana_client/utils.py)
[ 108.6s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'occurrences': 1, 'strategy': 'exact', 'diff':
'--- a/reana_client…
[ 120.3s] 💭 (62 chars) "Now let's run the reproduction script again to verify the fix."
[ 120.3s] 🔧 run_command (26 lines) python3 - <<'PY'
[ 120.5s] → Duration: 71
[ 129.0s] 💭 (130 chars) "The reproduction script now passes. Let's run the existing tests in `tests/test_utils.py` to
make sure we haven't broken..."
[ 129.0s] 🔧 run_command pytest tests/test_utils.py -q --tb=short --no-header
[ 130.9s] → ... [100%]
[ 140.3s] 💭 (258 chars) "Existing tests pass.
I should also check if there are any other places where workflow duration is calculated, just in c..."
[ 140.3s] 🔧 run_command grep -rn "duration" reana_client/ | grep ".py"
[ 140.4s] → reana_client/cli/workflow.py:43: get_workflow_duration,
[ 151.1s] 💭 (468 chars) "It seems `get_workflow_duration` is the central place where duration is calculated.
Let's double check the `reana_clien..."
[ 151.1s] 🔧 run_command git status --short && git diff
[ 151.2s] → M reana_client/utils.py
[ 155.4s] 💭 (55 chars) "The diff looks correct and minimal. No untracked files."
[ 155.4s] 🤖 submit_patch
[ 155.5s] → submit_patch: {"status": "ok", "patch_size": 824, "files_changed": 1}
[ 168.7s] 💭 (205 chars) "I have successfully fixed the issue where the duration of stopped workflows was calculated
using the current time instea..."
[ 168.7s] ✅ Agent finished: The duration of stopped workflows was incorrectly calculated using the current time
instead of the stop time in `reana_client.utils.get_workflow_duration`. I updated the function to use `run_stopped_a...
Native result row
{
"agent_error": null,
"duration_seconds": 185.81,
"error": null,
"grade": {
"collected_tests": 139,
"competition_junit_ok": true,
"error": null,
"required_issues_count": 0,
"resolved": true,
"status_counts": {
"PASSED": 138,
"SKIPPED": 1
},
"strict_clean_patch": true,
"test_exit_code": 0
},
"instance_id": "reanahub__reana-client-701",
"pass_idx": 0,
"patch_chars": 824,
"phase1_seconds": 171.38,
"repo": "reanahub/reana-client",
"request_log_path": "/kaggle-root/working/r31/rollouts_X/requests/reanahub__reana-client-701__p0__r6.jsonl",
"resolved": true,
"rollout_idx": 6,
"run_key": "reanahub__reana-client-701__p0__r6",
"strict_clean_patch": true,
"tool_calls": 10,
"total_llm_calls": 12,
"trace_path": "/kaggle-root/working/r31/rollouts_X/traces/trace_reanahub__reana-client-701__p0__r6.json"
}