ROLLOUT 5 · reanahub/reana-client
reanahub__reana-client-701
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10model calls
2,996tokens generated
78,100prompt tokens read
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⚠ The request log has 9 model calls but the trace has 11 agent calls, so tokens are listed separately instead of beside each turn.
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System instructions 4,822 characters
You are a principal Python software engineer resolving a repository issue in `/workspace`. Your sole objective is to produce a minimal, root-cause source patch that passes every hidden fail-to-pass and pass-to-pass regression test on the first grading run. ## Critical Environment & Grader Rules 1. **Air-Gapped Sandbox & Available CLI Tools**: No network access. Never run `pip`, `uv`, `conda`, or `git fetch`. Note: `rg` (`ripgrep`) is NOT installed in the container — always use `grep -rn --include="*.py"` for fast exact searches so you never waste a tool call on `command not found`. 2. **Protected Grading Paths**: Before running official verification, the grading harness **strips and reverts all changes** to `tests/`, `test/`, `testing/`, `test_*.py`, `*_test.py`, `conftest.py`, `pyproject.toml`, `setup.cfg`, `pytest.ini`, and `tox.ini`. Every part of your fix MUST reside in non-test production source files. 3. **Untracked File Trap (`git add -N .`)**: `submit_patch` stages ALL untracked files inside `/workspace`! Never leave reproduction or scratch files inside `/workspace` — run reproductions inline via `python3 - <<'PY'` or inside `/tmp/repro.py` in a single `run_command`. 4. **Stdout Truncation Rule**: `run_command` truncates stdout after the first 5,000 characters from the TOP. Always run pytest quietly with short tracebacks: `pytest path/to/test_file.py -k pattern -q --tb=short --no-header` If a test file is large, redirect output to `/tmp/pytest.log` and inspect `tail -n 80 /tmp/pytest.log` so failure tracebacks at the bottom are never cut off. 5. **Strict Pacing Discipline**: `get_status` and `submit_patch` are free and do NOT count toward `max_tool_calls`. Target **16-22 counted tool calls total**, and **begin your first `edit_file` change no later than tool call 15**. Reserve at least 4 calls for verification, `git status --short && git diff`, and submission. ## Execution Protocol ### Phase 1 — Pinpoint Code & Tests Immediately (1-2 tool calls) - The user message already contains `Workspace Layout` — do NOT waste a turn running `ls` on top-level directories. - Run a single compound `run_command` with `grep -rn --include="*.py"` to locate: (a) the exact symbols, error strings, or functions from the problem description, (b) **all parallel or sibling implementations** (for example sync + async variants, `Client` + `AsyncClient`, serializer + deserializer, multiple backends/dialects, base + subclass methods, `__init__.py` / `__all__` exports), and (c) the closest existing unit test files under `tests/`. ### Phase 2 — Deep Read & Spec Anchor (2-5 tool calls) - Use `read_file` with generous `start_line` and `end_line` windows (180-300 lines per call so you read whole modules in fewer calls) on the target function/class, callers, type annotations, and neighboring tests. - Before editing, verify every explicit and implicit requirement from the issue: exact parameter names, defaults, boundary/domain edge cases, exception types/messages, `None` vs empty collection vs falsy (`0`, `False`, `""`) semantics, mutability/copying, and return types. ### Phase 3 — Reproduce Bug in One Call (1 tool call) - Run ONE concise command (`python3 - <<'PY' ... PY` or targeted `pytest ... -q --tb=short --no-header`) via `run_command` to observe the exact pre-fix failure. Do NOT spend multiple tool calls writing separate reproduction scripts. ### Phase 4 — Surgical Implementation Across All Parallel Paths (1-4 tool calls) - Begin editing by tool call 15! Use `edit_file` with 4-6 lines of exact surrounding context copied from `read_file`. - Update ALL parallel codepaths (sync/async, multiple classes/dialects, type hints) consistently so partial fixes do not fail sibling tests. - **2-Strike Edit Rule**: If `edit_file` fails twice on the same block due to whitespace or escaping, do not retry `edit_file` a third time — apply an atomic Python transformation via `run_command` and immediately verify `python3 -m py_compile path/to/file.py`. ### Phase 5 — Edge-Case Verification, Diff Hygiene & Clean Exit (2-4 tool calls) - Run a single compound `run_command` testing both your reproduction + boundary edge cases (`None`, empty input, leading/trailing delimiters, subdomain/prefix boundaries, subclass/async parity) AND the relevant existing `pytest` module(s) with `-q --tb=short --no-header`. - Run `git status --short && git diff` via `run_command`. Confirm: - ZERO untracked (`??`) files in `/workspace` (`rm -f` any untracked workspace files immediately), - ZERO modifications to `tests/` or protected config files (`git checkout -- tests/` if touched), - Minimal, clean diff with valid imports and indentation. - Call `submit_patch` once verification passes, then respond with a brief 2-sentence plain-text summary and make NO further tool calls.
Task prompt 6,896 characters
You are evaluating a software engineering task for repository reanahub/reana-client. Problem Statement: cli: duration of stopped workflows is not displayed correctly Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment. ```console ❯ reana-client status -w recast --include-duration --json | jq '.[0].status' "stopped" ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2598 # After a few seconds... ❯ reana-client status -w recast --include-duration --json | jq '.[0].duration' 2604 ``` This is very likely because in [`reana_client.utils.get_workflow_duration`](https://github.com/reanahub/reana-client/blob/5b278f131b59d3ecfd3c7f129040a126cd01b60a/reana_client/utils.py#L134) we only look at `run_finished_at`, but not at `run_stopped_at`. ## Hints: codecov[bot]: ## [Codecov](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) Report All modified and coverable lines are covered by tests :white_check_mark: > Comparison is base [(`fa5b7c7`)](https://app.codecov.io/gh/reanahub/reana-client/commit/fa5b7c76eb25bfb1591e6fae4a142d975e14b937?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.57% compared to head [(`d3925f2`)](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) 58.62%. <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) ```diff @@ Coverage Diff @@ ## master #701 +/- ## ========================================== + Coverage 58.57% 58.62% +0.05% ========================================== Files 24 24 Lines 2390 2393 +3 ========================================== + Hits 1400 1403 +3 Misses 990 990 ``` | [Files](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub) | Coverage Δ | | |---|---|---| | [reana\_client/api/client.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L2FwaS9jbGllbnQucHk=) | `45.54% <100.00%> (ø)` | | | [reana\_client/utils.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3V0aWxzLnB5) | `76.47% <100.00%> (+0.60%)` | :arrow_up: | | [reana\_client/validation/environments.py](https://app.codecov.io/gh/reanahub/reana-client/pull/701?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=reanahub#diff-cmVhbmFfY2xpZW50L3ZhbGlkYXRpb24vZW52aXJvbm1lbnRzLnB5) | `32.50% <ø> (ø)` | | </details> giuseppe-steduto: Note for the reviewer: I chose `status` as the scope of the commit because I think that the commands affected by the PR are a nice user-facing scope for changes to the client. For example, this PR fixes `status`, `list`, and in general the commands that use the `--include-duration` flag, I chose `status` as it is the one most evidently impacted. WDYT? mdonadoni: Regarding the scope, I think `fix(status)` can be a good choice. WDYT @tiborsimko ? ## Task Budget (Session terminates when any budget is exhausted) - Time allowance: 7.5 minutes - Tool calls allowance: 30 calls - Max loop iterations: 40 turns ## Execution Environment Rules - Single command timeout: 90 seconds (commands exceeding this fail without ending the session) - Command output limit: 5000 characters - File view limit: 150 lines per read_file call - File character limit: 10000 characters per read_file call - Environment is offline (no network/PyPI access). All repository and test dependencies are ALREADY pre-installed. Do NOT attempt to run pip install or download packages. ## Instructions: 0. All source code is under `/workspace`. Do NOT search outside `/workspace` (e.g. `/usr/`, `/wheels/`, system site-packages). If imports fail, the issue is in the source code under `/workspace`, not in missing system packages. 1. Analyze the problem statement and any provided hints carefully to identify all requested script paths, CLI subcommands, or Python modules. 2. Inspect existing codebase conventions and test files before making edits. 3. Verify your implementation using targeted tests or inline assertions before submitting. 4. Call submit_patch only after your implementation is complete and verified. 5. As your final action, you must return a text-only response reporting your completion to terminate the session. ## Workspace Layout The repository is located at `/workspace`. Here is the directory tree (up to 3 levels): ``` ./AUTHORS.rst ./CHANGELOG.md ./CHANGES.rst ./CONTRIBUTING.rst ./LICENSE ./MANIFEST.in ./README.rst ./docs ./pytest.ini ./reana_client ./reana_client/__init__.py ./reana_client/api ./reana_client/api/__init__.py ./reana_client/api/client.py ./reana_client/api/utils.py ./reana_client/cli ./reana_client/cli/__init__.py ./reana_client/cli/cwl_runner.py ./reana_client/cli/files.py ./reana_client/cli/ping.py ./reana_client/cli/quotas.py ./reana_client/cli/retention_rules.py ./reana_client/cli/secrets.py ./reana_client/cli/utils.py ./reana_client/cli/workflow.py ./reana_client/config.py ./reana_client/errors.py ./reana_client/printer.py ./reana_client/utils.py ./reana_client/validation ./reana_client/validation/__init__.py ./reana_client/validation/compute_backends.py ./reana_client/validation/environments.py ./reana_client/validation/parameters.py ./reana_client/validation/utils.py ./reana_client/validation/workspace.py ./reana_client/version.py ./requirements-dev.txt ./run-tests.sh ./scripts ./scripts/create-appimage.sh ./scripts/generate_cli_api.py ./setup.cfg ./setup.py ./tests ./tox.ini ```
Turn 1at 15 s217 tokens out4,359 prompt tokens
The problem is that when a workflow is stopped, the duration displayed by `reana-client status --include-duration` is the time from start until now, instead of the time from start until it was stopped. The issue points to `reana_client.utils.get_workflow_duration` and mentions it only looks at `run_finished_at` but not `run_stopped_at`. Step 1: Locate `get_workflow_duration` in `reana_client/utils.py`. Step 2: Analyze the implementation of `get_workflow_duration`. Step 3: Create a reproduction case to confirm the bug. Step 4: Fix the bug by considering `run_stopped_at`. Step 5: Verify the fix. Let's start by reading `reana_client/utils.py`.
TOOL CALL · run_command
{
"command": "grep -rn --include=\"*.py\" \"get_workflow_duration\" ."
}Result of run_command 748 characters
{
"status": "ok",
"stdout": "./reana_client/cli/workflow.py:43: get_workflow_duration,\n./reana_client/cli/workflow.py:251: workflow[\"duration\"] = get_workflow_duration(workflow)\n./reana_client/cli/workflow.py:796: data[-1] += [get_workflow_duration(workflow_response) or \"-\"]\n./reana_client/utils.py:134:def get_workflow_duration(workflow: Dict) -> Optional[int]:\n./tests/test_utils.py:14:from reana_client.utils import get_workflow_duration\n./tests/test_utils.py:24: assert get_workflow_duration(workflow) is None\n./tests/test_utils.py:34: assert get_workflow_duration(workflow) == 60 + 11\n./tests/test_utils.py:49: assert get_workflow_duration(workflow) == 60 + 11\n",
"stderr": "",
"exit_code": 0
}Turn 2at 20 s79 tokens out4,857 prompt tokens
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` at line 134. Let's read the code around there.
TOOL CALL · read_file
{
"end_line": 160,
"filepath": "reana_client/utils.py",
"start_line": 130
}Result of read_file 1,235 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"content": " # Return the name given as parameter without a `run_number`.\n return workflow_name, \"\"\n\n\ndef get_workflow_duration(workflow: Dict) -> Optional[int]:\n \"\"\"Calculate the duration of the workflow.\n\n :param workflow: Workflow details returned by the server.\n :return: The duration of the workflow in seconds or ``None`` if the starting\n time is not present.\n \"\"\"\n\n # FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher\n def fromisoformat(date_string):\n return datetime.strptime(date_string, \"%Y-%m-%dT%H:%M:%S\")\n\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n return duration\n\n",
"start_line": 130,
"end_line": 160,
"total_lines": 277,
"is_truncated": false
}Turn 3at 42 s310 tokens out5,331 prompt tokens
The logic currently is:
1. Get `run_started_at` and `run_finished_at` from `progress`.
2. If `run_started_at` exists:
a. If `run_finished_at` exists, `end_time = run_finished_at`.
b. Otherwise, `end_time = datetime.utcnow()`.
3. `duration = end_time - start_time`.
The issue is that for stopped workflows, it should use `run_stopped_at` if it's present and `run_finished_at` is not.
Wait, if a workflow is stopped, will `run_finished_at` be present? The issue says "Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
This implies that for a stopped workflow, `run_finished_at` might be missing, and it falls back to `datetime.utcnow()`.
Let's check `tests/test_utils.py` to see how it's currently tested.
TOOL CALL · read_file
{
"filepath": "tests/test_utils.py"
}Result of read_file 1,574 characters
{
"status": "ok",
"filepath": "tests/test_utils.py",
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of REANA.\n# Copyright (C) 2022 CERN.\n#\n# REANA is free software; you can redistribute it and/or modify it\n# under the terms of the MIT License; see LICENSE file for more details.\n\n\"\"\"REANA client utils tests.\"\"\"\n\nfrom unittest.mock import patch\nfrom datetime import datetime\n\nfrom reana_client.utils import get_workflow_duration\n\n\ndef test_duration_pending_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": None,\n \"run_finished_at\": None,\n }\n }\n assert get_workflow_duration(workflow) is None\n\n\ndef test_duration_finished_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": \"2022-06-16T14:43:22\",\n }\n }\n assert get_workflow_duration(workflow) == 60 + 11\n\n\ndef test_duration_running_workflow():\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-07-16T14:42:11\",\n \"run_finished_at\": None,\n }\n }\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 7, 16, 14, 43, 22)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n assert get_workflow_duration(workflow) == 60 + 11",
"start_line": 1,
"end_line": 49,
"total_lines": 49,
"is_truncated": false
}Turn 4at 80 s544 tokens out6,197 prompt tokens
I can add a test case for a stopped workflow. I need to know where `run_stopped_at` is located. The issue says "we only look at `run_finished_at`, but not at `run_stopped_at`". It's likely under `progress` as well. Let's create a reproduction script to confirm the behavior.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_stopped_workflow_duration():\n # Workflow started at 14:42:11 and stopped at 14:43:22\n # run_finished_at is None because it was stopped, not finished normally.\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:43:22\",\n }\n }\n \n # Current time is later, e.g., 14:45:00\n from unittest.mock import patch\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 6, 16, 14, 45, 0)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n \n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n # Expected: duration from started to stopped (60 + 11 = 71)\n # Actual: duration from started to now (3 min = 180 - 11 = 169)\n assert duration == 60 + 11\n\nif __name__ == \"__main__\":\n try:\n test_stopped_workflow_duration()\n print(\"Test passed!\")\n except AssertionError as e:\n print(f\"Test failed! Actual duration: {duration}\")\n except Exception as e:\n print(f\"An error occurred: {e}\")\nPY\n"
}Result of run_command 1,516 characters
{
"status": "error",
"error_type": "CommandError",
"error_message": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\nTraceback (most recent call last):\n File \"<stdin>\", line 31, in <module>\n File \"<stdin>\", line 27, in test_stopped_workflow_duration\nAssertionError\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"<stdin>\", line 34, in <module>\nNameError: name 'duration' is not defined\n",
"details": {
"stdout": "Duration: 169\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\nTraceback (most recent call last):\n File \"<stdin>\", line 31, in <module>\n File \"<stdin>\", line 27, in test_stopped_workflow_duration\nAssertionError\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"<stdin>\", line 34, in <module>\nNameError: name 'duration' is not defined\n",
"exit_code": 1
}
}Turn 5at 141 s1,098 tokens out7,237 prompt tokens
The reproduction confirms the bug. `Duration: 169` was printed, which is the duration from `run_started_at` to the mocked `utcnow()` (14:45:00 - 14:42:11 = 2 min 49 sec = 169 sec), instead of the expected 71 seconds (14:43:22 - 14:42:11).
Now I need to modify `get_workflow_duration` to use `run_stopped_at` if `run_finished_at` is not available.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
"""Calculate the duration of the workflow.
:param workflow: Workflow details returned by the server.
:return: The duration of the workflow in seconds or ``None`` if the starting
time is not present.
"""
# FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
I should change it to:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, if a workflow is "stopped", is `run_finished_at` set?
Usually, if it's "stopped", it might not be "finished".
The issue says: "the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
And "This is very likely because in `reana_client.utils.get_workflow_duration` we only look at `run_finished_at`, but not at `run_stopped_at`."
So it seems that if `run_finished_at` is absent, we should check `run_stopped_at`.
Let's apply this change.
TOOL CALL · edit_file
{
"filepath": "reana_client/utils.py",
"new_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n run_stopped_at = progress.get(\"run_stopped_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n elif run_stopped_at:\n end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())",
"old_string": " progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n\n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())"
}Result of edit_file 828 characters
{
"status": "ok",
"filepath": "reana_client/utils.py",
"occurrences": 1,
"strategy": "exact",
"diff": "--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"is_truncated": false
}Turn 6at 156 s451 tokens out8,631 prompt tokens
Now I will run the reproduction script again to certify the fix.
TOOL CALL · run_command
{
"command": "python3 - <<'PY'\nfrom datetime import datetime\nfrom reana_client.utils import get_workflow_duration\n\ndef test_stopped_workflow_duration():\n # Workflow started at 14:42:11 and stopped at 14:43:22\n # run_finished_at is None because it was stopped, not finished normally.\n workflow = {\n \"progress\": {\n \"run_started_at\": \"2022-06-16T14:42:11\",\n \"run_finished_at\": None,\n \"run_stopped_at\": \"2022-06-16T14:43:22\",\n }\n }\n \n # Current time is later, e.g., 14:45:00\n from unittest.mock import patch\n with patch(\"reana_client.utils.datetime\") as mock_datetime:\n mock_datetime.utcnow.return_value = datetime(2022, 6, 16, 14, 45, 0)\n mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(\n *args, **kw\n )\n \n duration = get_workflow_duration(workflow)\n print(f\"Duration: {duration}\")\n # Expected: duration from started to stopped (60 + 11 = 71)\n assert duration == 60 + 11\n\nif __name__ == \"__main__\":\n try:\n test_stopped_workflow_duration()\n print(\"Test passed!\")\n except AssertionError:\n print(f\"Test failed! Actual duration: {duration}\")\n except Exception as e:\n print(f\"An error occurred: {e}\")\nPY\n"
}Result of run_command 423 characters
{
"status": "ok",
"stdout": "Duration: 71\nTest passed!\n",
"stderr": "/usr/local/lib/python3.10/site-packages/reana_commons/config.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 7at 162 s54 tokens out9,241 prompt tokens
The reproduction script now passes. Now let's run the existing tests for `utils.py`.
TOOL CALL · run_command
{
"command": "pytest tests/test_utils.py -q --tb=short --no-header"
}Result of run_command 2,957 characters
{
"status": "ok",
"stdout": "... [100%]\n\n---------- coverage: platform linux, python 3.10.19-final-0 ----------\nName Stmts Miss Cover Missing\n---------------------------------------------------------------------------\nreana_client/__init__.py 4 0 100%\nreana_client/api/__init__.py 2 2 0% 9-11\nreana_client/api/client.py 415 415 0% 8-1282\nreana_client/api/utils.py 9 9 0% 8-19\nreana_client/cli/__init__.py 47 47 0% 8-97\nreana_client/cli/cwl_runner.py 159 159 0% 8-265\nreana_client/cli/files.py 306 306 0% 8-649\nreana_client/cli/ping.py 60 60 0% 8-130\nreana_client/cli/quotas.py 41 41 0% 8-116\nreana_client/cli/retention_rules.py 28 28 0% 8-73\nreana_client/cli/secrets.py 73 73 0% 8-160\nreana_client/cli/utils.py 183 183 0% 8-408\nreana_client/cli/workflow.py 579 579 0% 8-1459\nreana_client/config.py 35 0 100%\nreana_client/errors.py 4 0 100%\nreana_client/printer.py 17 13 24% 31-62\nreana_client/utils.py 120 78 35% 30-39, 57-78, 84-89, 94-98, 114-131, 157, 166-185, 194, 206-224, 234-251, 256-257, 262-280\nreana_client/validation/__init__.py 1 0 100%\nreana_client/validation/compute_backends.py 14 7 50% 29-39\nreana_client/validation/environments.py 200 167 16% 42-62, 74-77, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 186-221, 225-244, 249-308, 312-373, 380-395, 399, 407-410, 419-429, 434-462, 471-484, 492-503\nreana_client/validation/parameters.py 31 19 39% 26-37, 42-44, 49, 58, 67, 75-79\nreana_client/validation/utils.py 64 48 25% 38-109, 118-131, 136-144, 151-155\nreana_client/validation/workspace.py 15 8 47% 31-45\nreana_client/version.py 3 0 100%\n---------------------------------------------------------------------------\nTOTAL 2410 2242 7%\nCoverage XML written to file coverage.xml\n\n3 passed in 0.28s\n",
"stderr": "/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n import pkg_resources\n",
"exit_code": 0
}Turn 8at 171 s47 tokens out10,452 prompt tokens
The tests passed. I should also verify that no other files were accidentally modified and there are no untracked files.
TOOL CALL · run_command
{
"command": "git status --short && git diff"
}Result of run_command 938 characters
{
"status": "ok",
"stdout": " M reana_client/utils.py\ndiff --git a/reana_client/utils.py b/reana_client/utils.py\nindex b8596bf..c19ac20 100644\n--- a/reana_client/utils.py\n+++ b/reana_client/utils.py\n@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:\n progress = workflow.get(\"progress\", {})\n run_started_at = progress.get(\"run_started_at\")\n run_finished_at = progress.get(\"run_finished_at\")\n+ run_stopped_at = progress.get(\"run_stopped_at\")\n \n duration = None\n if run_started_at:\n start_time = fromisoformat(run_started_at)\n if run_finished_at:\n end_time = fromisoformat(run_finished_at)\n+ elif run_stopped_at:\n+ end_time = fromisoformat(run_stopped_at)\n else:\n end_time = datetime.utcnow()\n duration = round((end_time - start_time).total_seconds())\n",
"stderr": "",
"exit_code": 0
}Turn 9at 177 s61 tokens out10,848 prompt tokens
Everything looks correct. I've fixed the bug by incorporating `run_stopped_at` into the duration calculation when `run_finished_at` is missing. I've verified the fix with a reproduction script and run existing tests.
TOOL CALL · submit_patch
Result of submit_patch 55 characters
{
"status": "ok",
"patch_size": 824,
"files_changed": 1
}Turn 10at 186 s135 tokens out10,947 prompt tokens
I have completed the task. I've identified the root cause in `get_workflow_duration`, fixed it by considering `run_stopped_at` as a fallback for `run_finished_at`, and verified the fix with both a new reproduction test case and existing tests.
Turn 11at 186 s
The duration of stopped workflows was incorrectly calculated as the time from start until the current moment because the code only checked for `run_finished_at`. I updated `get_workflow_duration` in `reana_client/utils.py` to use `run_stopped_at` as a fallback if `run_finished_at` is not present.
Model calls (not matched to turns)
Generated tokens 217 tokens · stopped: STOP
The problem is that when a workflow is stopped, the duration displayed by `reana-client status --include-duration` is the time from start until now, instead of the time from start until it was stopped. The issue points to `reana_client.utils.get_workflow_duration` and mentions it only looks at `run_finished_at` but not `run_stopped_at`. Step 1: Locate `get_workflow_duration` in `reana_client/utils.py`. Step 2: Analyze the implementation of `get_workflow_duration`. Step 3: Create a reproduction case to confirm the bug. Step 4: Fix the bug by considering `run_stopped_at`. Step 5: Verify the fix. Let's start by reading `reana_client/utils.py`.
<|channel>thought
The problem is that when a workflow is stopped, the duration displayed by `reana-client status --include-duration` is the time from start until now, instead of the time from start until it was stopped.
The issue points to `reana_client.utils.get_workflow_duration` and mentions it only looks at `run_finished_at` but not `run_stopped_at`.
Step 1: Locate `get_workflow_duration` in `reana_client/utils.py`.
Step 2: Analyze the implementation of `get_workflow_duration`.
Step 3: Create a reproduction case to confirm the bug.
Step 4: Fix the bug by considering `run_stopped_at`.
Step 5: Verify the fix.
Let's start by reading `reana_client/utils.py`.<channel|><|tool_call>call:run_command{command:<|"|>grep -rn --include="*.py" "get_workflow_duration" .<|"|>}<tool_call|><|tool_response>
Generated tokens 79 tokens · stopped: STOP
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` at line 134. Let's read the code around there.
Okay, `get_workflow_duration` is defined in `reana_client/utils.py` at line 134.
Let's read the code around there.
<channel|><|tool_call>call:read_file{filepath:<|"|>reana_client/utils.py<|"|>,end_line:160,start_line:130}<tool_call|><|tool_response>
Generated tokens 310 tokens · stopped: STOP
The logic currently is:
1. Get `run_started_at` and `run_finished_at` from `progress`.
2. If `run_started_at` exists:
a. If `run_finished_at` exists, `end_time = run_finished_at`.
b. Otherwise, `end_time = datetime.utcnow()`.
3. `duration = end_time - start_time`.
The issue is that for stopped workflows, it should use `run_stopped_at` if it's present and `run_finished_at` is not.
Wait, if a workflow is stopped, will `run_finished_at` be present? The issue says "Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
This implies that for a stopped workflow, `run_finished_at` might be missing, and it falls back to `datetime.utcnow()`.
Let's check `tests/test_utils.py` to see how it's currently tested.The logic currently is:
1. Get `run_started_at` and `run_finished_at` from `progress`.
2. If `run_started_at` exists:
a. If `run_finished_at` exists, `end_time = run_finished_at`.
b. Otherwise, `end_time = datetime.utcnow()`.
3. `duration = end_time - start_time`.
The issue is that for stopped workflows, it should use `run_stopped_at` if it's present and `run_finished_at` is not.
Wait, if a workflow is stopped, will `run_finished_at` be present? The issue says "Similarly to what was happening in reanahub/reana-ui#386, when running `reana-client status --include-duration` for a stopped workflow, the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
This implies that for a stopped workflow, `run_finished_at` might be missing, and it falls back to `datetime.utcnow()`.
Let's check `tests/test_utils.py` to see how it's currently tested.<channel|><|tool_call>call:read_file{filepath:<|"|>tests/test_utils.py<|"|>}<tool_call|><|tool_response>
Generated tokens 544 tokens · stopped: STOP
I can add a test case for a stopped workflow. I need to know where `run_stopped_at` is located. The issue says "we only look at `run_finished_at`, but not at `run_stopped_at`". It's likely under `progress` as well. Let's create a reproduction script to confirm the behavior.
I can add a test case for a stopped workflow. I need to know where `run_stopped_at` is located. The issue says "we only look at `run_finished_at`, but not at `run_stopped_at`". It's likely under `progress` as well.
Let's create a reproduction script to confirm the behavior.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_stopped_workflow_duration():
# Workflow started at 14:42:11 and stopped at 14:43:22
# run_finished_at is None because it was stopped, not finished normally.
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Current time is later, e.g., 14:45:00
from unittest.mock import patch
with patch("reana_client.utils.datetime") as mock_datetime:
mock_datetime.utcnow.return_value = datetime(2022, 6, 16, 14, 45, 0)
mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(
*args, **kw
)
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# Expected: duration from started to stopped (60 + 11 = 71)
# Actual: duration from started to now (3 min = 180 - 11 = 169)
assert duration == 60 + 11
if __name__ == "__main__":
try:
test_stopped_workflow_duration()
print("Test passed!")
except AssertionError as e:
print(f"Test failed! Actual duration: {duration}")
except Exception as e:
print(f"An error occurred: {e}")
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 1,098 tokens · stopped: STOP
The reproduction confirms the bug. `Duration: 169` was printed, which is the duration from `run_started_at` to the mocked `utcnow()` (14:45:00 - 14:42:11 = 2 min 49 sec = 169 sec), instead of the expected 71 seconds (14:43:22 - 14:42:11).
Now I need to modify `get_workflow_duration` to use `run_stopped_at` if `run_finished_at` is not available.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
"""Calculate the duration of the workflow.
:param workflow: Workflow details returned by the server.
:return: The duration of the workflow in seconds or ``None`` if the starting
time is not present.
"""
# FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
I should change it to:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, if a workflow is "stopped", is `run_finished_at` set?
Usually, if it's "stopped", it might not be "finished".
The issue says: "the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
And "This is very likely because in `reana_client.utils.get_workflow_duration` we only look at `run_finished_at`, but not at `run_stopped_at`."
So it seems that if `run_finished_at` is absent, we should check `run_stopped_at`.
Let's apply this change.The reproduction confirms the bug. `Duration: 169` was printed, which is the duration from `run_started_at` to the mocked `utcnow()` (14:45:00 - 14:42:11 = 2 min 49 sec = 169 sec), instead of the expected 71 seconds (14:43:22 - 14:42:11).
Now I need to modify `get_workflow_duration` to use `run_stopped_at` if `run_finished_at` is not available.
```python
def get_workflow_duration(workflow: Dict) -> Optional[int]:
"""Calculate the duration of the workflow.
:param workflow: Workflow details returned by the server.
:return: The duration of the workflow in seconds or ``None`` if the starting
time is not present.
"""
# FIXME: Use datetime.fromisoformat when moving to Python 3.7 or higher
def fromisoformat(date_string):
return datetime.strptime(date_string, "%Y-%m-%dT%H:%M:%S")
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
return duration
```
I should change it to:
```python
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
```
Wait, if a workflow is "stopped", is `run_finished_at` set?
Usually, if it's "stopped", it might not be "finished".
The issue says: "the displayed duration is not the time between the moment in which the run was started and the moment in which the run was stopped, but the total time passed from the beginning of the run until the current moment."
And "This is very likely because in `reana_client.utils.get_workflow_duration` we only look at `run_finished_at`, but not at `run_stopped_at`."
So it seems that if `run_finished_at` is absent, we should check `run_stopped_at`.
Let's apply this change.<channel|><|tool_call>call:edit_file{filepath:<|"|>reana_client/utils.py<|"|>,new_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
elif run_stopped_at:
end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())<|"|>,old_string:<|"|> progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())<|"|>}<tool_call|><|tool_response>
Generated tokens 451 tokens · stopped: STOP
Now I will run the reproduction script again to certify the fix.
Now I will run the reproduction script again to certify the fix.
<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY'
from datetime import datetime
from reana_client.utils import get_workflow_duration
def test_stopped_workflow_duration():
# Workflow started at 14:42:11 and stopped at 14:43:22
# run_finished_at is None because it was stopped, not finished normally.
workflow = {
"progress": {
"run_started_at": "2022-06-16T14:42:11",
"run_finished_at": None,
"run_stopped_at": "2022-06-16T14:43:22",
}
}
# Current time is later, e.g., 14:45:00
from unittest.mock import patch
with patch("reana_client.utils.datetime") as mock_datetime:
mock_datetime.utcnow.return_value = datetime(2022, 6, 16, 14, 45, 0)
mock_datetime.strptime.side_effect = lambda *args, **kw: datetime.strptime(
*args, **kw
)
duration = get_workflow_duration(workflow)
print(f"Duration: {duration}")
# Expected: duration from started to stopped (60 + 11 = 71)
assert duration == 60 + 11
if __name__ == "__main__":
try:
test_stopped_workflow_duration()
print("Test passed!")
except AssertionError:
print(f"Test failed! Actual duration: {duration}")
except Exception as e:
print(f"An error occurred: {e}")
PY
<|"|>}<tool_call|><|tool_response>
Generated tokens 54 tokens · stopped: STOP
The reproduction script now passes. Now let's run the existing tests for `utils.py`.
The reproduction script now passes. Now let's run the existing tests for `utils.py`.
<channel|><|tool_call>call:run_command{command:<|"|>pytest tests/test_utils.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Generated tokens 47 tokens · stopped: STOP
The tests passed. I should also verify that no other files were accidentally modified and there are no untracked files.
The tests passed. I should also verify that no other files were accidentally modified and there are no untracked files.
<channel|><|tool_call>call:run_command{command:<|"|>git status --short && git diff<|"|>}<tool_call|><|tool_response>
Generated tokens 61 tokens · stopped: STOP
Everything looks correct. I've fixed the bug by incorporating `run_stopped_at` into the duration calculation when `run_finished_at` is missing. I've verified the fix with a reproduction script and run existing tests.
Everything looks correct. I've fixed the bug by incorporating `run_stopped_at` into the duration calculation when `run_finished_at` is missing. I've verified the fix with a reproduction script and run existing tests.
<channel|><|tool_call>call:submit_patch{}<tool_call|><|tool_response>
Patch, tests and logs
Final code change Included
diff --git a/reana_client/utils.py b/reana_client/utils.py
index b8596bf..c19ac20 100644
--- a/reana_client/utils.py
+++ b/reana_client/utils.py
@@ -146,12 +146,15 @@ def get_workflow_duration(workflow: Dict) -> Optional[int]:
progress = workflow.get("progress", {})
run_started_at = progress.get("run_started_at")
run_finished_at = progress.get("run_finished_at")
+ run_stopped_at = progress.get("run_stopped_at")
duration = None
if run_started_at:
start_time = fromisoformat(run_started_at)
if run_finished_at:
end_time = fromisoformat(run_finished_at)
+ elif run_stopped_at:
+ end_time = fromisoformat(run_stopped_at)
else:
end_time = datetime.utcnow()
duration = round((end_time - start_time).total_seconds())
Test output Included
============================= test session starts ============================== collected 139 items tests/test_cli_files.py ................... [ 13%] tests/test_cli_ping.py .... [ 16%] tests/test_cli_retention_rules.py . [ 17%] tests/test_cli_secrets.py ......... [ 23%] tests/test_cli_workflows.py ............................................ [ 55%] ...x.... [ 61%] tests/test_utils.py .... [ 64%] tests/test_validate_compute_backends.py .................... [ 78%] tests/test_validate_environments.py ................ [ 89%] tests/test_validate_parameters.py ........ [ 95%] tests/test_validate_server_capabilities.py ..... [ 99%] tests/test_version.py . [100%] ==================================== PASSES ==================================== _____________ test_create_snakemake_workflow_from_json_parameters ______________ ----------------------------- Captured stdout call ----------------------------- Building DAG of jobs... Job stats: job count ----- ------- foo 1 total 1 ------------------------------ Captured log call ------------------------------- WARNING snakemake.logging:logging.py:580 Building DAG of jobs... WARNING snakemake.logging:logging.py:590 Job stats: job count ----- ------- foo 1 total 1 _________________________ test_validate_parameters_cwl _________________________ ----------------------------- Captured stderr call ----------------------------- /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools /usr/local/lib/python3.10/site-packages/cwltool/main.py:37: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources # part of setuptools - generated xml file: /tmp/rebench-grade-043c5b0ca86c47339e0579232cd23a2a.xml -- ---------- coverage: platform linux, python 3.10.19-final-0 ---------- Name Stmts Miss Cover Missing --------------------------------------------------------------------------- reana_client/__init__.py 4 0 100% reana_client/api/__init__.py 2 0 100% reana_client/api/client.py 415 226 46% 57, 63-71, 84-105, 155-170, 190-205, 229-244, 286, 288, 290, 293, 303, 328-343, 367-382, 411-427, 442-469, 507-525, 554, 560-567, 598-613, 629, 631-634, 640-641, 646, 649-650, 655-665, 677, 686-692, 711-726, 738-760, 776-811, 825-850, 869-896, 923-937, 956-970, 995-1010, 1039-1054, 1080, 1096-1098, 1116-1136, 1154-1169, 1190-1205, 1220-1244, 1269-1282 reana_client/api/utils.py 9 0 100% reana_client/cli/__init__.py 47 18 62% 60-77 reana_client/cli/cwl_runner.py 159 159 0% 8-265 reana_client/cli/files.py 306 74 76% 45, 159-168, 221-236, 257, 265-280, 282, 322-328, 336-342, 350-354, 373-374, 404-405, 411-412, 421-438, 440, 490-497, 530-534, 577-584, 643-649 reana_client/cli/ping.py 60 22 63% 25, 67-74, 87, 112-130 reana_client/cli/quotas.py 41 22 46% 30, 72-116 reana_client/cli/retention_rules.py 28 5 82% 29, 64-67 reana_client/cli/secrets.py 73 18 75% 30, 85-91, 113-127, 154-160 reana_client/cli/utils.py 183 52 72% 162, 165-166, 186-190, 193, 197-203, 211-212, 257-258, 288-294, 300-304, 322-328, 340-408 reana_client/cli/workflow.py 579 210 64% 60, 67, 369-370, 388-395, 488-497, 589-668, 718, 726, 731, 749-751, 761-765, 770-773, 800-808, 844-937, 1003-1011, 1013-1020, 1022-1028, 1054-1080, 1207-1235, 1277-1336, 1342, 1412-1421, 1450-1459 reana_client/config.py 35 0 100% reana_client/errors.py 4 0 100% reana_client/printer.py 17 2 88% 41-47 reana_client/utils.py 120 29 76% 31-37, 74, 78, 89, 97, 119-124, 128-131, 166-185, 244-251, 280 reana_client/validation/__init__.py 1 0 100% reana_client/validation/compute_backends.py 14 3 79% 32-38 reana_client/validation/environments.py 200 135 32% 42-62, 81-86, 90, 94-95, 108-121, 129-144, 148-175, 225-244, 249-308, 325, 328-338, 341-363, 380-395, 407-410, 419-429, 434-462, 471-484, 492-503 reana_client/validation/parameters.py 31 0 100% reana_client/validation/utils.py 64 17 73% 39-47, 56, 62-81, 87, 105-109 reana_client/validation/workspace.py 15 0 100% reana_client/version.py 3 0 100% --------------------------------------------------------------------------- TOTAL 2410 992 59% Coverage XML written to file coverage.xml =========================== short test summary info ============================ PASSED tests/test_cli_files.py::test_list_files_server_not_reachable PASSED tests/test_cli_files.py::test_list_files_server_no_token PASSED tests/test_cli_files.py::test_list_files_ok PASSED tests/test_cli_files.py::test_list_files_url PASSED tests/test_cli_files.py::test_download_file PASSED tests/test_cli_files.py::test_download_file_stdout PASSED tests/test_cli_files.py::test_download_multiple_files_stdout PASSED tests/test_cli_files.py::test_upload_file PASSED tests/test_cli_files.py::test_upload_file_respect_gitignore PASSED tests/test_cli_files.py::test_upload_file_skip_empty_git_and_reana_ignore_files PASSED tests/test_cli_files.py::test_upload_file_respect_reanaignore_and_gitignore PASSED tests/test_cli_files.py::test_delete_file PASSED tests/test_cli_files.py::test_delete_non_existing_file PASSED tests/test_cli_files.py::test_move_files PASSED tests/test_cli_files.py::test_list_files_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_valid_filter PASSED tests/test_cli_files.py::test_list_disk_usage_with_invalid_filter PASSED tests/test_cli_files.py::test_list_files_filter_with_filename PASSED tests/test_cli_files.py::test_prune_workspace PASSED tests/test_cli_ping.py::test_ping_token_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_set PASSED tests/test_cli_ping.py::test_ping_server_not_reachable PASSED tests/test_cli_ping.py::test_ping_ok PASSED tests/test_cli_retention_rules.py::test_retention_rules_list PASSED tests/test_cli_secrets.py::test_secrets_list_server_not_reachable PASSED tests/test_cli_secrets.py::test_secrets_list_server_no_token PASSED tests/test_cli_secrets.py::test_secrets_list_ok PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reanauser] PASSED tests/test_cli_secrets.py::test_secrets_add[USER=reana=user] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[wrongformat] PASSED tests/test_cli_secrets.py::test_secrets_add_wrong_format[PASS:123] PASSED tests/test_cli_secrets.py::test_secrets_add_already_exist PASSED tests/test_cli_secrets.py::test_secrets_delete PASSED tests/test_cli_workflows.py::test_workflows_server_not_connected PASSED tests/test_cli_workflows.py::test_workflows_no_token PASSED tests/test_cli_workflows.py::test_workflows_server_ok PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options0-expected_status_filter0] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options1-expected_status_filter1] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options2-expected_status_filter2] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options3-expected_status_filter3] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options4-expected_status_filter4] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options5-expected_status_filter5] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options6-expected_status_filter6] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options7-expected_status_filter7] PASSED tests/test_cli_workflows.py::test_deleted_workflows[cli_options8-expected_status_filter8] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running] PASSED tests/test_cli_workflows.py::test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ] PASSED tests/test_cli_workflows.py::test_workflows_sessions PASSED tests/test_cli_workflows.py::test_workflows_valid_json PASSED tests/test_cli_workflows.py::test_workflows_include_progress PASSED tests/test_cli_workflows.py::test_workflows_without_include_progress PASSED tests/test_cli_workflows.py::test_workflows_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_without_include_workspace_size PASSED tests/test_cli_workflows.py::test_workflows_format PASSED tests/test_cli_workflows.py::test_workflows_filter PASSED tests/test_cli_workflows.py::test_workflow_create_failed PASSED tests/test_cli_workflows.py::test_workflow_create_successful PASSED tests/test_cli_workflows.py::test_workflow_create_not_valid_name PASSED tests/test_cli_workflows.py::test_create_workflow_from_json PASSED tests/test_cli_workflows.py::test_create_snakemake_workflow_from_json_parameters PASSED tests/test_cli_workflows.py::test_workflow_start_successful[created-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[pending-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[queued-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[running-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[deleted-1] PASSED tests/test_cli_workflows.py::test_workflow_start_successful[stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-failed-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[running-stopped-1] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[queued-finished-0] PASSED tests/test_cli_workflows.py::test_workflow_start_follow[pending-deleted-1] PASSED tests/test_cli_workflows.py::test_workflows_validate PASSED tests/test_cli_workflows.py::test_get_workflow_status_ok PASSED tests/test_cli_workflows.py::test_run PASSED tests/test_cli_workflows.py::test_workflow_input_parameters PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info0-True] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info1-False] PASSED tests/test_cli_workflows.py::test_open_interactive_session[jupyter-reana_info2-False] PASSED tests/test_cli_workflows.py::test_close_interactive_session PASSED tests/test_cli_workflows.py::test_multiple_specifications PASSED tests/test_cli_workflows.py::test_yml_ext_specification PASSED tests/test_cli_workflows.py::test_run_with_no_inputs PASSED tests/test_utils.py::test_duration_pending_workflow PASSED tests/test_utils.py::test_duration_finished_workflow PASSED tests/test_utils.py::test_duration_stopped_workflow PASSED tests/test_utils.py::test_duration_running_workflow PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_serial[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends0-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[kubernetes-supported_backends1-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends2-True] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[slurmcern-supported_backends3-False] PASSED tests/test_validate_compute_backends.py::test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:baz-has the correct format-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar-not have an explicit tag-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:master-tag is not recommended-False] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar:-has invalid tag-True] PASSED tests/test_validate_environments.py::test_validate_environment_image_tag[foo:bar -contains illegal characters-True] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-bar-foo:bar] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo--foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-None-foo] PASSED tests/test_validate_environments.py::test_get_full_image_name[foo-latest-foo:latest] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1] PASSED tests/test_validate_environments.py::test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7] PASSED tests/test_validate_parameters.py::test_validate_parameters_cwl PASSED tests/test_validate_parameters.py::test_validate_parameters_serial PASSED tests/test_validate_parameters.py::test_validate_parameters_yadage PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands0-gendata-] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.] PASSED tests/test_validate_parameters.py::test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3] PASSED tests/test_validate_server_capabilities.py::test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4] PASSED tests/test_version.py::test_version XFAIL tests/test_cli_workflows.py::test_open_interactive_session[wrong-interactive-type-reana_info3-True] ======================= 138 passed, 1 xfailed in 11.57s ========================
Test errors Included
/usr/local/lib/python3.10/site-packages/pytest_reana/fixtures.py:19: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources
Test report (JUnit) Included
<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="1" tests="139" time="11.568" timestamp="2026-11-14T04:48:49.383218" hostname="0ff00d0fade3"><testcase classname="tests.test_cli_files" name="test_list_files_server_not_reachable" time="0.002" /><testcase classname="tests.test_cli_files" name="test_list_files_server_no_token" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_ok" time="0.132" /><testcase classname="tests.test_cli_files" name="test_list_files_url" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file" time="0.123" /><testcase classname="tests.test_cli_files" name="test_download_file_stdout" time="0.002" /><testcase classname="tests.test_cli_files" name="test_download_multiple_files_stdout" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_gitignore" time="0.002" /><testcase classname="tests.test_cli_files" name="test_upload_file_skip_empty_git_and_reana_ignore_files" time="0.003" /><testcase classname="tests.test_cli_files" name="test_upload_file_respect_reanaignore_and_gitignore" time="0.004" /><testcase classname="tests.test_cli_files" name="test_delete_file" time="0.122" /><testcase classname="tests.test_cli_files" name="test_delete_non_existing_file" time="0.122" /><testcase classname="tests.test_cli_files" name="test_move_files" time="0.001" /><testcase classname="tests.test_cli_files" name="test_list_files_filter" time="0.122" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_valid_filter" time="0.123" /><testcase classname="tests.test_cli_files" name="test_list_disk_usage_with_invalid_filter" time="0.122" /><testcase classname="tests.test_cli_files" name="test_list_files_filter_with_filename" time="0.123" /><testcase classname="tests.test_cli_files" name="test_prune_workspace" time="0.168" /><testcase classname="tests.test_cli_ping" name="test_ping_token_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_set" time="0.001" /><testcase classname="tests.test_cli_ping" name="test_ping_server_not_reachable" time="0.123" /><testcase classname="tests.test_cli_ping" name="test_ping_ok" time="0.123" /><testcase classname="tests.test_cli_retention_rules" name="test_retention_rules_list" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_not_reachable" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_server_no_token" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_list_ok" time="0.121" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reanauser]" time="0.122" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add[USER=reana=user]" time="0.123" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[wrongformat]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_wrong_format[PASS:123]" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_add_already_exist" time="0.001" /><testcase classname="tests.test_cli_secrets" name="test_secrets_delete" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_not_connected" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_no_token" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_server_ok" time="0.127" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options0-expected_status_filter0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options1-expected_status_filter1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options2-expected_status_filter2]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options3-expected_status_filter3]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options4-expected_status_filter4]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options5-expected_status_filter5]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options6-expected_status_filter6]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options7-expected_status_filter7]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_deleted_workflows[cli_options8-expected_status_filter8]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options0-mytest 15 2018-06-13T10:55:37 - - running\nmytest 2 2018-06-13T09:55:35 - - running\nmytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sorting[cli_options1-mytest 1 * 2018-06-13T09:47:35 2018-06-13T09:47:40 2018-06-13T10:30:03 running 1.55 MiB\nmytest 2 2018-06-13T09:55:35 - - running 540 KiB \nmytest 15 2018-06-13T10:55:37 - - running 192 KiB ]" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_sessions" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_valid_json" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_progress" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_progress" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_include_workspace_size" time="0.123" /><testcase classname="tests.test_cli_workflows" name="test_workflows_without_include_workspace_size" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflows_format" time="0.124" /><testcase classname="tests.test_cli_workflows" name="test_workflows_filter" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_failed" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_successful" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_workflow_create_not_valid_name" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_create_workflow_from_json" time="0.128" /><testcase classname="tests.test_cli_workflows" name="test_create_snakemake_workflow_from_json_parameters" time="0.324" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[created-0]" time="0.120" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[pending-0]" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[queued-0]" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[running-0]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[finished-0]" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[failed-1]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[deleted-1]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_successful[stopped-1]" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-failed-1]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[running-stopped-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[queued-finished-0]" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_start_follow[pending-deleted-1]" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_workflows_validate" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_get_workflow_status_ok" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_run" time="0.002" /><testcase classname="tests.test_cli_workflows" name="test_workflow_input_parameters" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info0-True]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info1-False]" time="0.121" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[jupyter-reana_info2-False]" time="0.122" /><testcase classname="tests.test_cli_workflows" name="test_open_interactive_session[wrong-interactive-type-reana_info3-True]" time="0.123"><skipped type="pytest.xfail" message="" /></testcase><testcase classname="tests.test_cli_workflows" name="test_close_interactive_session" time="0.120" /><testcase classname="tests.test_cli_workflows" name="test_multiple_specifications" time="0.001" /><testcase classname="tests.test_cli_workflows" name="test_yml_ext_specification" time="0.008" /><testcase classname="tests.test_cli_workflows" name="test_run_with_no_inputs" time="0.003" /><testcase classname="tests.test_utils" name="test_duration_pending_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_finished_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_stopped_workflow" time="0.000" /><testcase classname="tests.test_utils" name="test_duration_running_workflow" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends0-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[kubernetes-supported_backends1-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends2-True]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[slurmcern-supported_backends3-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_serial[htcondorcern-supported_backends4-False]" time="0.003" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_yadage[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_snakemake[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends0-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[kubernetes-supported_backends1-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends2-True]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[slurmcern-supported_backends3-False]" time="0.001" /><testcase classname="tests.test_validate_compute_backends" name="test_validate_compute_backends_cwl[htcondorcern-supported_backends4-False]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:baz-has the correct format-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar-not have an explicit tag-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo/bar:latest-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:master-tag is not recommended-False]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:baz-has invalid tag-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar:-has invalid tag-True]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_validate_environment_image_tag[foo:bar -contains illegal characters-True]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-bar-foo:bar]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo--foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-None-foo]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_get_full_image_name[foo-latest-foo:latest]" time="0.000" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1-https://hub.docker.com/v2/repositories/reanahub/reana-env-aliphysics/tags/vAN-20180614-1]" time="0.001" /><testcase classname="tests.test_validate_environments" name="test_image_exists_in_dockerhub[python:2.7-https://hub.docker.com/v2/repositories/library/python/tags/2.7]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_cwl" time="3.990" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_serial" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_parameters_yadage" time="0.003" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands0-gendata-]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands1-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands2-fitdata-"sudo" found in step "fitdata" might be dangerous.]" time="0.001" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands3-installation-"cd /" found in step "installation" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_parameters" name="test_validate_dangerous_operations[commands4-None-"sudo" might be dangerous.]" time="0.000" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args0-appear valid-0-available_workspaces0]" time="0.127" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args1-Please provide your access token by using the -t/--access-token flag, or by setting the REANA_ACCESS_TOKEN environment variable.-1-available_workspaces1]" time="0.121" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[False-cli_args2-Valid REANA specification file.-0-available_workspaces2]" time="0.127" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args3-Workflow workspace appears valid.-0-available_workspaces3]" time="0.129" /><testcase classname="tests.test_validate_server_capabilities" name="test_validate_workspaces[True-cli_args4-Desired workspace "/var/reana" is not valid.-1-available_workspaces4]" time="0.129" /><testcase classname="tests.test_version" name="test_version" time="0.000" /></testsuite></testsuites>
Agent log Included
[ 0.0s] 📋 System Prompt: You are a principal Python software engineer resolving a repository issue in `/workspace`.
[ 0.0s] 🎯 Task Prompt: You are evaluating a software engineering task for repository reanahub/reana-client.
[ 14.9s] 💭 (650 chars) "The problem is that when a workflow is stopped, the duration displayed by `reana-client
status --include-duration` is th..."
[ 14.9s] 🔧 run_command grep -rn --include="*.py" "get_workflow_duration" .
[ 14.9s] → ./reana_client/cli/workflow.py:43: get_workflow_duration,
[ 19.9s] 💭 (114 chars) "Okay, `get_workflow_duration` is defined in `reana_client/utils.py` at line 134.
Let's read the code around there."
[ 19.9s] 📖 read_file (reana_client/utils.py)
[ 19.9s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'content': ' # Return the name given as
parameter without a…
[ 41.8s] 💭 (1016 chars) "The logic currently is:
1. Get `run_started_at` and `run_finished_at` from `progress`.
2. If `run_started_at` exists:
..."
[ 41.8s] 📖 read_file (tests/test_utils.py)
[ 41.9s] ✓ {'status': 'ok', 'filepath': 'tests/test_utils.py', 'content': '# -*- coding: utf-8 -*-\n#\n# This file
is part of REANA…
[ 79.7s] 💭 (275 chars) "I can add a test case for a stopped workflow. I need to know where `run_stopped_at` is
located. The issue says "we only ..."
[ 79.7s] 🔧 run_command (38 lines) python3 - <<'PY'
[ 80.4s] → error (exit 0):
[ 140.7s] 💭 (2522 chars) "The reproduction confirms the bug. `Duration: 169` was printed, which is the duration from
`run_started_at` to the mocke..."
[ 140.7s] ✏️ edit_file (reana_client/utils.py)
[ 140.8s] ✓ {'status': 'ok', 'filepath': 'reana_client/utils.py', 'occurrences': 1, 'strategy': 'exact', 'diff':
'--- a/reana_client…
[ 155.2s] 💭 (64 chars) "Now I will run the reproduction script again to certify the fix."
[ 155.2s] 🔧 run_command (37 lines) python3 - <<'PY'
[ 155.4s] → Duration: 71
[ 161.5s] 💭 (84 chars) "The reproduction script now passes. Now let's run the existing tests for `utils.py`."
[ 161.5s] 🔧 run_command pytest tests/test_utils.py -q --tb=short --no-header
[ 163.4s] → ... [100%]
[ 170.4s] 💭 (119 chars) "The tests passed. I should also verify that no other files were accidentally modified and
there are no untracked files."
[ 170.4s] 🔧 run_command git status --short && git diff
[ 170.4s] → M reana_client/utils.py
[ 176.5s] 💭 (216 chars) "Everything looks correct. I've fixed the bug by incorporating `run_stopped_at` into the
duration calculation when `run_f..."
[ 176.5s] 🤖 submit_patch
[ 176.6s] → submit_patch: {"status": "ok", "patch_size": 824, "files_changed": 1}
[ 185.8s] 💭 (243 chars) "I have completed the task. I've identified the root cause in `get_workflow_duration`, fixed
it by considering `run_stopp..."
[ 185.8s] ✅ Agent finished: The duration of stopped workflows was incorrectly calculated as the time from start until
the current moment because the code only checked for `run_finished_at`. I updated `get_workflow_duration` in `...
Native result row
{
"agent_error": null,
"duration_seconds": 202.79,
"error": null,
"grade": {
"collected_tests": 139,
"competition_junit_ok": true,
"error": null,
"required_issues_count": 0,
"resolved": true,
"status_counts": {
"PASSED": 138,
"SKIPPED": 1
},
"strict_clean_patch": true,
"test_exit_code": 0
},
"instance_id": "reanahub__reana-client-701",
"pass_idx": 0,
"patch_chars": 824,
"phase1_seconds": 188.46,
"repo": "reanahub/reana-client",
"request_log_path": "/kaggle-root/working/r31/rollouts_X/requests/reanahub__reana-client-701__p0__r5.jsonl",
"resolved": true,
"rollout_idx": 5,
"run_key": "reanahub__reana-client-701__p0__r5",
"strict_clean_patch": true,
"tool_calls": 8,
"total_llm_calls": 10,
"trace_path": "/kaggle-root/working/r31/rollouts_X/traces/trace_reanahub__reana-client-701__p0__r5.json"
}