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ROLLOUT 1 · reata/sqllineage

reata__sqllineage-224

Solved
455 stotal time
20tool calls
20model calls
5,897tokens generated
207,311prompt tokens read

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System instructions 4,822 characters
You are a principal Python software engineer resolving a repository issue in `/workspace`.
Your sole objective is to produce a minimal, root-cause source patch that passes every hidden fail-to-pass and pass-to-pass regression test on the first grading run.

## Critical Environment & Grader Rules
1. **Air-Gapped Sandbox & Available CLI Tools**: No network access. Never run `pip`, `uv`, `conda`, or `git fetch`. Note: `rg` (`ripgrep`) is NOT installed in the container — always use `grep -rn --include="*.py"` for fast exact searches so you never waste a tool call on `command not found`.
2. **Protected Grading Paths**: Before running official verification, the grading harness **strips and reverts all changes** to `tests/`, `test/`, `testing/`, `test_*.py`, `*_test.py`, `conftest.py`, `pyproject.toml`, `setup.cfg`, `pytest.ini`, and `tox.ini`. Every part of your fix MUST reside in non-test production source files.
3. **Untracked File Trap (`git add -N .`)**: `submit_patch` stages ALL untracked files inside `/workspace`! Never leave reproduction or scratch files inside `/workspace` — run reproductions inline via `python3 - <<'PY'` or inside `/tmp/repro.py` in a single `run_command`.
4. **Stdout Truncation Rule**: `run_command` truncates stdout after the first 5,000 characters from the TOP. Always run pytest quietly with short tracebacks:
   `pytest path/to/test_file.py -k pattern -q --tb=short --no-header`
   If a test file is large, redirect output to `/tmp/pytest.log` and inspect `tail -n 80 /tmp/pytest.log` so failure tracebacks at the bottom are never cut off.
5. **Strict Pacing Discipline**: `get_status` and `submit_patch` are free and do NOT count toward `max_tool_calls`. Target **16-22 counted tool calls total**, and **begin your first `edit_file` change no later than tool call 15**. Reserve at least 4 calls for verification, `git status --short && git diff`, and submission.

## Execution Protocol

### Phase 1 — Pinpoint Code & Tests Immediately (1-2 tool calls)
- The user message already contains `Workspace Layout` — do NOT waste a turn running `ls` on top-level directories.
- Run a single compound `run_command` with `grep -rn --include="*.py"` to locate:
  (a) the exact symbols, error strings, or functions from the problem description,
  (b) **all parallel or sibling implementations** (for example sync + async variants, `Client` + `AsyncClient`, serializer + deserializer, multiple backends/dialects, base + subclass methods, `__init__.py` / `__all__` exports), and
  (c) the closest existing unit test files under `tests/`.

### Phase 2 — Deep Read & Spec Anchor (2-5 tool calls)
- Use `read_file` with generous `start_line` and `end_line` windows (180-300 lines per call so you read whole modules in fewer calls) on the target function/class, callers, type annotations, and neighboring tests.
- Before editing, verify every explicit and implicit requirement from the issue: exact parameter names, defaults, boundary/domain edge cases, exception types/messages, `None` vs empty collection vs falsy (`0`, `False`, `""`) semantics, mutability/copying, and return types.

### Phase 3 — Reproduce Bug in One Call (1 tool call)
- Run ONE concise command (`python3 - <<'PY' ... PY` or targeted `pytest ... -q --tb=short --no-header`) via `run_command` to observe the exact pre-fix failure. Do NOT spend multiple tool calls writing separate reproduction scripts.

### Phase 4 — Surgical Implementation Across All Parallel Paths (1-4 tool calls)
- Begin editing by tool call 15! Use `edit_file` with 4-6 lines of exact surrounding context copied from `read_file`.
- Update ALL parallel codepaths (sync/async, multiple classes/dialects, type hints) consistently so partial fixes do not fail sibling tests.
- **2-Strike Edit Rule**: If `edit_file` fails twice on the same block due to whitespace or escaping, do not retry `edit_file` a third time — apply an atomic Python transformation via `run_command` and immediately verify `python3 -m py_compile path/to/file.py`.

### Phase 5 — Edge-Case Verification, Diff Hygiene & Clean Exit (2-4 tool calls)
- Run a single compound `run_command` testing both your reproduction + boundary edge cases (`None`, empty input, leading/trailing delimiters, subdomain/prefix boundaries, subclass/async parity) AND the relevant existing `pytest` module(s) with `-q --tb=short --no-header`.
- Run `git status --short && git diff` via `run_command`. Confirm:
  - ZERO untracked (`??`) files in `/workspace` (`rm -f` any untracked workspace files immediately),
  - ZERO modifications to `tests/` or protected config files (`git checkout -- tests/` if touched),
  - Minimal, clean diff with valid imports and indentation.
- Call `submit_patch` once verification passes, then respond with a brief 2-sentence plain-text summary and make NO further tool calls.
Task prompt 3,058 characters
You are evaluating a software engineering task for repository reata/sqllineage.

Problem Statement:
Table/Column Lineage Mixed up For Self Dependent SQL
```sql
INSERT OVERWRITE TABLE foo
SELECT col FROM foo
WHERE flag IS NOT NULL
```

```
Statements(#): 1
Source Tables:
    <default>.foo
    <default>.foo.col
Target Tables:
    <default>.foo
    <default>.foo.col
```

Column lineage is displayed by mistake here.

## Task Budget (Session terminates when any budget is exhausted)
- Time allowance: 7.5 minutes
- Tool calls allowance: 30 calls
- Max loop iterations: 40 turns

## Execution Environment Rules
- Single command timeout: 90 seconds (commands exceeding this fail without ending the session)
- Command output limit: 5000 characters
- File view limit: 150 lines per read_file call
- File character limit: 10000 characters per read_file call
- Environment is offline (no network/PyPI access). All repository and test dependencies are ALREADY pre-installed. Do NOT attempt to run pip install or download packages.

## Instructions:
0. All source code is under `/workspace`. Do NOT search outside `/workspace` (e.g. `/usr/`, `/wheels/`, system site-packages). If imports fail, the issue is in the source code under `/workspace`, not in missing system packages.
1. Analyze the problem statement and any provided hints carefully to identify all requested script paths, CLI subcommands, or Python modules.
2. Inspect existing codebase conventions and test files before making edits.
3. Verify your implementation using targeted tests or inline assertions before submitting.
4. Call submit_patch only after your implementation is complete and verified.
5. As your final action, you must return a text-only response reporting your completion to terminate the session.
## Workspace Layout
The repository is located at `/workspace`. Here is the directory tree (up to 3 levels):
```
./CONTRIBUTING.md
./Dockerfile
./LICENSE
./MANIFEST.in
./README.md
./docs
./mypy.ini
./setup.py
./sqllineage
./sqllineage/__init__.py
./sqllineage/cli.py
./sqllineage/core
./sqllineage/core/__init__.py
./sqllineage/core/analyzer.py
./sqllineage/core/handlers
./sqllineage/core/holders.py
./sqllineage/core/models.py
./sqllineage/data
./sqllineage/data/tpcds
./sqllineage/drawing.py
./sqllineage/exceptions.py
./sqllineage/io.py
./sqllineage/runner.py
./sqllineage/utils
./sqllineage/utils/__init__.py
./sqllineage/utils/constant.py
./sqllineage/utils/entities.py
./sqllineage/utils/helpers.py
./sqllineage/utils/sqlparse.py
./sqllineagejs
./sqllineagejs/config-overrides.js
./sqllineagejs/package-lock.json
./sqllineagejs/package.json
./sqllineagejs/public
./sqllineagejs/public/favicon.ico
./sqllineagejs/public/index.html
./sqllineagejs/public/logo192.png
./sqllineagejs/public/logo512.png
./sqllineagejs/public/manifest.json
./sqllineagejs/public/robots.txt
./sqllineagejs/src
./sqllineagejs/src/App.js
./sqllineagejs/src/api
./sqllineagejs/src/app
./sqllineagejs/src/features
./sqllineagejs/src/index.css
./sqllineagejs/src/index.js
./tests
./tox.ini
```
Turn 1at 20 s269 tokens out2,981 prompt tokens
The user is reporting an issue with `sqllineage` where table and column lineage are mixed up for self-dependent SQL (e.g., `INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL`).
The output shows both table and column lineage as "Source Tables" and "Target Tables", which seems incorrect for the "Tables" part. Specifically, it says:
Source Tables:
    <default>.foo
    <default>.foo.col
Target Tables:
    <default>.foo
    <default>.foo.col

It seems that column lineage is being listed under "Source Tables" and "Target Tables" instead of separately or not at all if it's not requested/appropriate. Actually, "Source Tables" should generally only contain tables.

Let's start by reproducing this with a small script.
TOOL CALL · run_command
{
  "command": "python3 - <<'PY'\nfrom sqllineage.runner import LineageRunner\n\nsql = \"INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL\"\nrunner = LineageRunner(sql)\nprint(\"Source Tables:\", runner.source_tables)\nprint(\"Target Tables:\", runner.target_tables)\nPY\n"
}
Result of run_command 192 characters
{
  "status": "ok",
  "stdout": "Source Tables: [Table: <default>.foo, Column: <default>.foo.col]\nTarget Tables: [Table: <default>.foo, Column: <default>.foo.col]\n",
  "stderr": "",
  "exit_code": 0
}
Generated tokens 269 tokens · stopped: STOP
<|channel>thought The user is reporting an issue with `sqllineage` where table and column lineage are mixed up for self-dependent SQL (e.g., `INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL`). The output shows both table and column lineage as "Source Tables" and "Target Tables", which seems incorrect for the "Tables" part. Specifically, it says: Source Tables: <default>.foo <default>.foo.col Target Tables: <default>.foo <default>.foo.col It seems that column lineage is being listed under "Source Tables" and "Target Tables" instead of separately or not at all if it's not requested/appropriate. Actually, "Source Tables" should generally only contain tables. Let's start by reproducing this with a small script.<channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY' from sqllineage.runner import LineageRunner sql = "INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL" runner = LineageRunner(sql) print("Source Tables:", runner.source_tables) print("Target Tables:", runner.target_tables) PY <|"|>}<tool_call|><|tool_response>
Turn 2at 28 s117 tokens out3,331 prompt tokens
The reproduction confirms the issue. `runner.source_tables` and `runner.target_tables` both contain `Column` objects when the table is self-dependent.

Now I need to investigate how `sqllineage` identifies source and target tables and columns.
The reproduction uses `LineageRunner`. Let's look at `sqllineage/runner.py` and `sqllineage/core/analyzer.py`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/runner.py"
}
Result of read_file 5,132 characters
{
  "status": "ok",
  "filepath": "sqllineage/runner.py",
  "content": "import logging\nfrom typing import Dict, List, Tuple\n\nimport sqlparse\nfrom sqlparse.sql import Statement\n\nfrom sqllineage.core import LineageAnalyzer\nfrom sqllineage.core.holders import SQLLineageHolder\nfrom sqllineage.core.models import Column, Table\nfrom sqllineage.drawing import draw_lineage_graph\nfrom sqllineage.io import to_cytoscape\nfrom sqllineage.utils.constant import LineageLevel\n\n\nlogger = logging.getLogger(__name__)\n\n\ndef lazy_method(func):\n    def wrapper(*args, **kwargs):\n        self = args[0]\n        if not self._evaluated:\n            self._eval()\n        return func(*args, **kwargs)\n\n    return wrapper\n\n\ndef lazy_property(func):\n    return property(lazy_method(func))\n\n\nclass LineageRunner(object):\n    def __init__(\n        self,\n        sql: str,\n        encoding: str = None,\n        verbose: bool = False,\n        draw_options: Dict[str, str] = None,\n    ):\n        \"\"\"\n        The entry point of SQLLineage after command line options are parsed.\n\n        :param sql: a string representation of SQL statements.\n        :param encoding: the encoding for sql string\n        :param verbose: verbose flag indicate whether statement-wise lineage result will be shown\n        \"\"\"\n        self._encoding = encoding\n        self._sql = sql\n        self._verbose = verbose\n        self._draw_options = draw_options if draw_options else {}\n        self._evaluated = False\n        self._stmt: List[Statement] = []\n\n    @lazy_method\n    def __str__(self):\n        \"\"\"\n        print out the Lineage Summary.\n        \"\"\"\n        statements = self.statements(strip_comments=True)\n        source_tables = \"\\n    \".join(str(t) for t in self.source_tables)\n        target_tables = \"\\n    \".join(str(t) for t in self.target_tables)\n        combined = f\"\"\"Statements(#): {len(statements)}\nSource Tables:\n    {source_tables}\nTarget Tables:\n    {target_tables}\n\"\"\"\n        if self.intermediate_tables:\n            intermediate_tables = \"\\n    \".join(\n                str(t) for t in self.intermediate_tables\n            )\n            combined += f\"\"\"Intermediate Tables:\n    {intermediate_tables}\"\"\"\n        if self._verbose:\n            result = \"\"\n            for i, holder in enumerate(self._stmt_holders):\n                stmt_short = statements[i].replace(\"\\n\", \"\")\n                if len(stmt_short) > 50:\n                    stmt_short = stmt_short[:50] + \"...\"\n                content = str(holder).replace(\"\\n\", \"\\n    \")\n                result += f\"\"\"Statement #{i + 1}: {stmt_short}\n    {content}\n\"\"\"\n            combined = result + \"==========\\nSummary:\\n\" + combined\n        return combined\n\n    @lazy_method\n    def to_cytoscape(self, level=LineageLevel.TABLE) -> List[Dict[str, Dict[str, str]]]:\n        \"\"\"\n        to turn the DAG into cytoscape format.\n        \"\"\"\n        if level == LineageLevel.COLUMN:\n            return to_cytoscape(self._sql_holder.column_lineage_graph, compound=True)\n        else:\n            return to_cytoscape(self._sql_holder.table_lineage_graph)\n\n    def draw(self) -> None:\n        \"\"\"\n        to draw the lineage directed graph\n        \"\"\"\n        draw_options = self._draw_options\n        if draw_options.get(\"f\") is None:\n            draw_options.pop(\"f\", None)\n            draw_options[\"e\"] = self._sql\n        return draw_lineage_graph(**draw_options)\n\n    @lazy_method\n    def statements(self, **kwargs) -> List[str]:\n        \"\"\"\n        a list of statements.\n\n        :param kwargs: the key arguments that will be passed to `sqlparse.format`\n        \"\"\"\n        return [sqlparse.format(s.value, **kwargs) for s in self.statements_parsed]\n\n    @lazy_property\n    def statements_parsed(self) -> List[Statement]:\n        \"\"\"\n        a list of :class:`sqlparse.sql.Statement`\n        \"\"\"\n        return self._stmt\n\n    @lazy_property\n    def source_tables(self) -> List[Table]:\n        \"\"\"\n        a list of source :class:`sqllineage.models.Table`\n        \"\"\"\n        return sorted(self._sql_holder.source_tables, key=lambda x: str(x))\n\n    @lazy_property\n    def target_tables(self) -> List[Table]:\n        \"\"\"\n        a list of target :class:`sqllineage.models.Table`\n        \"\"\"\n        return sorted(self._sql_holder.target_tables, key=lambda x: str(x))\n\n    @lazy_property\n    def intermediate_tables(self) -> List[Table]:\n        \"\"\"\n        a list of intermediate :class:`sqllineage.models.Table`\n        \"\"\"\n        return sorted(self._sql_holder.intermediate_tables, key=lambda x: str(x))\n\n    @lazy_method\n    def get_column_lineage(self, exclude_subquery=True) -> List[Tuple[Column, Column]]:\n        \"\"\"\n        a list of column tuple :class:`sqllineage.models.Column`\n        \"\"\"\n        # sort by target column, and then source column\n        return sorted(",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 181,
  "is_truncated": true
}
Generated tokens 117 tokens · stopped: STOP
The reproduction confirms the issue. `runner.source_tables` and `runner.target_tables` both contain `Column` objects when the table is self-dependent. Now I need to investigate how `sqllineage` identifies source and target tables and columns. The reproduction uses `LineageRunner`. Let's look at `sqllineage/runner.py` and `sqllineage/core/analyzer.py`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/runner.py<|"|>}<tool_call|><|tool_response>
Turn 3at 38 s148 tokens out4,982 prompt tokens
`LineageRunner.source_tables` and `LineageRunner.target_tables` simply return `self._sql_holder.source_tables` and `self._sql_holder.target_tables`.
It seems `self._sql_holder` is initialized in `_eval()` method (which is called by `lazy_method`). Let's find where `_eval` is defined. I don't see it in the first 150 lines of `sqllineage/runner.py`. Let's read the rest.
TOOL CALL · read_file
{
  "filepath": "sqllineage/runner.py",
  "start_line": 151
}
Result of read_file 1,295 characters
{
  "status": "ok",
  "filepath": "sqllineage/runner.py",
  "content": "            self._sql_holder.get_column_lineage(exclude_subquery),\n            key=lambda x: (str(x[-1]), str(x[0])),\n        )\n\n    def print_column_lineage(self) -> None:\n        \"\"\"\n        print column level lineage to stdout\n        \"\"\"\n        for path in self.get_column_lineage():\n            print(\" <- \".join(str(col) for col in reversed(path)))\n\n    def print_table_lineage(self) -> None:\n        \"\"\"\n        print table level lineage to stdout\n        \"\"\"\n        print(str(self))\n\n    def _eval(self):\n        self._stmt = [\n            s\n            for s in sqlparse.parse(\n                # first apply sqlparser formatting just to get rid of comments, which cause\n                # inconsistencies in parsing output\n                sqlparse.format(self._sql.strip(), self._encoding, strip_comments=True),\n                self._encoding,\n            )\n            if s.token_first(skip_cm=True)\n        ]\n        self._stmt_holders = [LineageAnalyzer().analyze(stmt) for stmt in self._stmt]\n        self._sql_holder = SQLLineageHolder.of(*self._stmt_holders)\n        self._evaluated = True",
  "start_line": 151,
  "end_line": 181,
  "total_lines": 181,
  "is_truncated": false
}
Generated tokens 148 tokens · stopped: STOP
`LineageRunner.source_tables` and `LineageRunner.target_tables` simply return `self._sql_holder.source_tables` and `self._sql_holder.target_tables`. It seems `self._sql_holder` is initialized in `_eval()` method (which is called by `lazy_method`). Let's find where `_eval` is defined. I don't see it in the first 150 lines of `sqllineage/runner.py`. Let's read the rest. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/runner.py<|"|>,start_line:151}<tool_call|><|tool_response>
Turn 4at 45 s138 tokens out5,526 prompt tokens
`_eval` does this:
```python
        self._stmt_holders = [LineageAnalyzer().analyze(stmt) for stmt in self._stmt]
        self._sql_holder = SQLLineageHolder.of(*self._stmt_holders)
```
So `SQLLineageHolder` aggregates the results from `LineageAnalyzer().analyze(stmt)`.
Let's look at `sqllineage/core/holders.py` and `sqllineage/core/analyzer.py`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/holders.py"
}
Result of read_file 5,712 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/holders.py",
  "content": "import itertools\nfrom typing import Set, Tuple, Union\n\nimport networkx as nx\nfrom networkx import DiGraph\n\nfrom sqllineage.core.models import Column, Path, SubQuery, Table\nfrom sqllineage.utils.constant import EdgeType, NodeTag\n\nDATASET_CLASSES = (Path, Table)\n\n\nclass ColumnLineageMixin:\n    def get_column_lineage(self, exclude_subquery=True) -> Set[Tuple[Column, ...]]:\n        self.graph: DiGraph  # For mypy attribute checking\n        # filter all the column node in the graph\n        column_nodes = [n for n in self.graph.nodes if isinstance(n, Column)]\n        column_graph = self.graph.subgraph(column_nodes)\n        source_columns = {column for column, deg in column_graph.in_degree if deg == 0}\n        # if a column lineage path ends at SubQuery, then it should be pruned\n        target_columns = {\n            node\n            for node, deg in column_graph.out_degree\n            if isinstance(node, Column) and deg == 0\n        }\n        if exclude_subquery:\n            target_columns = {\n                node for node in target_columns if isinstance(node.parent, Table)\n            }\n        columns = set()\n        for (source, target) in itertools.product(source_columns, target_columns):\n            simple_paths = list(nx.all_simple_paths(self.graph, source, target))\n            if len(simple_paths) == 1:\n                columns.add(tuple(simple_paths[0]))\n            # we can ignore when simple path doesn't exist, but could there be more than one simple path?\n        return columns\n\n\nclass SubQueryLineageHolder(ColumnLineageMixin):\n    \"\"\"\n    SubQuery/Query Level Lineage Result.\n\n    SubQueryLineageHolder will hold attributes like read, write, cte\n\n    Each of them is a Set[:class:`sqllineage.models.Table`].\n\n    This is the most atomic representation of lineage result.\n    \"\"\"\n\n    def __init__(self) -> None:\n        self.graph = nx.DiGraph()\n\n    def __or__(self, other):\n        self.graph = nx.compose(self.graph, other.graph)\n        return self\n\n    def _property_getter(self, prop) -> Set[Union[SubQuery, Table]]:\n        return {t for t, attr in self.graph.nodes(data=True) if attr.get(prop) is True}\n\n    def _property_setter(self, value, prop) -> None:\n        self.graph.add_node(value, **{prop: True})\n\n    @property\n    def read(self) -> Set[Union[SubQuery, Table]]:\n        return self._property_getter(NodeTag.READ)\n\n    def add_read(self, value) -> None:\n        self._property_setter(value, NodeTag.READ)\n        # the same table can be added (in SQL: joined) multiple times with different alias\n        if hasattr(value, \"alias\"):\n            self.graph.add_edge(value, value.alias, type=EdgeType.HAS_ALIAS)\n\n    @property\n    def write(self) -> Set[Union[SubQuery, Table]]:\n        return self._property_getter(NodeTag.WRITE)\n\n    def add_write(self, value) -> None:\n        self._property_setter(value, NodeTag.WRITE)\n\n    @property\n    def cte(self) -> Set[SubQuery]:\n        return self._property_getter(NodeTag.CTE)  # type: ignore\n\n    def add_cte(self, value) -> None:\n        self._property_setter(value, NodeTag.CTE)\n\n    def add_column_lineage(self, src: Column, tgt: Column) -> None:\n        self.graph.add_edge(src, tgt, type=EdgeType.LINEAGE)\n        self.graph.add_edge(tgt.parent, tgt, type=EdgeType.HAS_COLUMN)\n        if src.parent is not None:\n            # starting NetworkX v2.6, None is not allowed as node, see https://github.com/networkx/networkx/pull/4892\n            self.graph.add_edge(src.parent, src, type=EdgeType.HAS_COLUMN)\n\n\nclass StatementLineageHolder(SubQueryLineageHolder, ColumnLineageMixin):\n    \"\"\"\n    Statement Level Lineage Result.\n\n    Based on SubQueryLineageHolder, StatementLineageHolder holds extra attributes like drop and rename\n\n    For drop, it is a Set[:class:`sqllineage.models.Table`].\n\n    For rename, it a Set[Tuple[:class:`sqllineage.models.Table`, :class:`sqllineage.models.Table`]], with the first\n    table being original table before renaming and the latter after renaming.\n    \"\"\"\n\n    def __str__(self):\n        return \"\\n\".join(\n            f\"table {attr}: {sorted(getattr(self, attr), key=lambda x: str(x)) if getattr(self, attr) else '[]'}\"\n            for attr in [\"read\", \"write\", \"cte\", \"drop\", \"rename\"]\n        )\n\n    def __repr__(self):\n        return str(self)\n\n    @property\n    def read(self) -> Set[Table]:  # type: ignore\n        return {t for t in super().read if isinstance(t, DATASET_CLASSES)}\n\n    @property\n    def write(self) -> Set[Table]:  # type: ignore\n        return {t for t in super().write if isinstance(t, DATASET_CLASSES)}\n\n    @property\n    def drop(self) -> Set[Table]:\n        return self._property_getter(NodeTag.DROP)  # type: ignore\n\n    def add_drop(self, value) -> None:\n        self._property_setter(value, NodeTag.DROP)\n\n    @property\n    def rename(self) -> Set[Tuple[Table, Table]]:\n        return {\n            (src, tgt)\n            for src, tgt, attr in self.graph.edges(data=True)\n            if attr.get(\"type\") == EdgeType.RENAME\n        }\n\n    def add_rename(self, src: Table, tgt: Table) -> None:\n        self.graph.add_edge(src, tgt, type=EdgeType.RENAME)\n\n    @staticmethod\n    def of(holder: SubQueryLineageHolder):\n        stmt_holder = StatementLineageHolder()\n        stmt_holder.graph = holder.graph\n        return stmt_holder\n\n\nclass SQLLineageHolder(ColumnLineageMixin):\n    def __init__(self, graph: DiGraph):",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 280,
  "is_truncated": true
}
Generated tokens 138 tokens · stopped: STOP
`_eval` does this: ```python self._stmt_holders = [LineageAnalyzer().analyze(stmt) for stmt in self._stmt] self._sql_holder = SQLLineageHolder.of(*self._stmt_holders) ``` So `SQLLineageHolder` aggregates the results from `LineageAnalyzer().analyze(stmt)`. Let's look at `sqllineage/core/holders.py` and `sqllineage/core/analyzer.py`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/holders.py<|"|>}<tool_call|><|tool_response>
Turn 5at 49 s60 tokens out7,428 prompt tokens
I need to see the `SQLLineageHolder` class in `sqllineage/core/holders.py`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/holders.py",
  "start_line": 151
}
Result of read_file 5,870 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/holders.py",
  "content": "        \"\"\"\n        The combined lineage result in representation of Directed Acyclic Graph.\n\n        :param graph: the Directed Acyclic Graph holding all the combined lineage result.\n        \"\"\"\n        self.graph = graph\n        self._selfloop_tables = self.__retrieve_tag_tables(NodeTag.SELFLOOP)\n        self._sourceonly_tables = self.__retrieve_tag_tables(NodeTag.SOURCE_ONLY)\n        self._targetonly_tables = self.__retrieve_tag_tables(NodeTag.TARGET_ONLY)\n\n    @property\n    def table_lineage_graph(self) -> DiGraph:\n        \"\"\"\n        The table level DiGraph held by SQLLineageHolder\n        \"\"\"\n        table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)]\n        return self.graph.subgraph(table_nodes)\n\n    @property\n    def column_lineage_graph(self) -> DiGraph:\n        \"\"\"\n        The column level DiGraph held by SQLLineageHolder\n        \"\"\"\n        column_nodes = [n for n in self.graph.nodes if isinstance(n, Column)]\n        return self.graph.subgraph(column_nodes)\n\n    @property\n    def source_tables(self) -> Set[Table]:\n        \"\"\"\n        a list of source :class:`sqllineage.models.Table`\n        \"\"\"\n        source_tables = {\n            table for table, deg in self.table_lineage_graph.in_degree if deg == 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n        )\n        source_tables |= self._selfloop_tables\n        source_tables |= self._sourceonly_tables\n        return source_tables\n\n    @property\n    def target_tables(self) -> Set[Table]:\n        \"\"\"\n        a list of target :class:`sqllineage.models.Table`\n        \"\"\"\n        target_tables = {\n            table for table, deg in self.table_lineage_graph.out_degree if deg == 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.in_degree if deg > 0}\n        )\n        target_tables |= self._selfloop_tables\n        target_tables |= self._targetonly_tables\n        return target_tables\n\n    @property\n    def intermediate_tables(self) -> Set[Table]:\n        \"\"\"\n        a list of intermediate :class:`sqllineage.models.Table`\n        \"\"\"\n        intermediate_tables = {\n            table for table, deg in self.table_lineage_graph.in_degree if deg > 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n        )\n        intermediate_tables -= self.__retrieve_tag_tables(NodeTag.SELFLOOP)\n        return intermediate_tables\n\n    def __retrieve_tag_tables(self, tag) -> Set[Table]:\n        return {\n            table\n            for table, attr in self.graph.nodes(data=True)\n            if attr.get(tag) is True\n        }\n\n    @staticmethod\n    def of(*args: StatementLineageHolder):\n        \"\"\"\n        To assemble multiple :class:`sqllineage.holders.StatementLineageHolder` into\n        :class:`sqllineage.holders.SQLLineageHolder`\n        \"\"\"\n        g = DiGraph()\n        for holder in args:\n            g = nx.compose(g, holder.graph)\n            if holder.drop:\n                for table in holder.drop:\n                    if g.has_node(table) and g.degree[table] == 0:\n                        g.remove_node(table)\n            elif holder.rename:\n                for (table_old, table_new) in holder.rename:\n                    g = nx.relabel_nodes(g, {table_old: table_new})\n                    g.remove_edge(table_new, table_new)\n                    if g.degree[table_new] == 0:\n                        g.remove_node(table_new)\n            else:\n                read, write = holder.read, holder.write\n                if len(read) > 0 and len(write) == 0:\n                    # source only table comes from SELECT statement\n                    g.add_nodes_from(read, **{NodeTag.SOURCE_ONLY: True})\n                elif len(read) == 0 and len(write) > 0:\n                    # target only table comes from case like: 1) INSERT/UPDATE constant values; 2) CREATE TABLE\n                    g.add_nodes_from(write, **{NodeTag.TARGET_ONLY: True})\n                else:\n                    g.add_nodes_from(read)\n                    g.add_nodes_from(write)\n                    for source, target in itertools.product(read, write):\n                        g.add_edge(source, target, type=EdgeType.LINEAGE)\n        for table in {e[0] for e in nx.selfloop_edges(g)}:\n            g.nodes[table][NodeTag.SELFLOOP] = True\n        # find all the columns that we can't assign accurately to a parent table (with multiple parent candidates)\n        unresolved_cols = [\n            (s, t)\n            for s, t in g.edges\n            if isinstance(s, Column) and len(s.parent_candidates) > 1\n        ]\n        for unresolved_col, tgt_col in unresolved_cols:\n            # check if there's only one parent candidate contains the column with same name\n            src_cols = []\n            for parent in unresolved_col.parent_candidates:\n                src_col = Column(unresolved_col.raw_name)\n                src_col.parent = parent\n                if g.has_edge(parent, src_col):\n                    src_cols.append(src_col)\n            if len(src_cols) == 1:\n                g.add_edge(src_cols[0], tgt_col, type=EdgeType.LINEAGE)\n                g.remove_edge(unresolved_col, tgt_col)\n        # when unresolved column got resolved, it will be orphan node, and we can remove it\n        for node in [n for n, deg in g.degree if deg == 0]:\n            if isinstance(node, Column) and len(node.parent_candidates) > 1:\n                g.remove_node(node)\n        return SQLLineageHolder(g)",
  "start_line": 151,
  "end_line": 280,
  "total_lines": 280,
  "is_truncated": false
}
Generated tokens 60 tokens · stopped: STOP
I need to see the `SQLLineageHolder` class in `sqllineage/core/holders.py`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/holders.py<|"|>,start_line:151}<tool_call|><|tool_response>
Turn 6at 82 s611 tokens out9,180 prompt tokens
Looking at `SQLLineageHolder.table_lineage_graph`:
```python
    @property
    def table_lineage_graph(self) -> DiGraph:
        \"\"\"\n        The table level DiGraph held by SQLLineageHolder\n        \"\"\"\n        table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)]\n        return self.graph.subgraph(table_nodes)\n```
And `DATASET_CLASSES = (Path, Table)`.

Wait, if `Table` is what we want, why is `Column` showing up in `source_tables`?
Let's look at `SQLLineageHolder.source_tables`:
```python
    @property
    def source_tables(self) -> Set[Table]:
        \"\"\"\n        a list of source :class:`sqllineage.models.Table`\n        \"\"\"\n        source_tables = {\n            table for table, deg in self.table_lineage_graph.in_degree if deg == 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n        )\n        source_tables |= self._selfloop_tables\n        source_tables |= self._sourceonly_tables\n        return source_tables
```

And `source_tables` depends on `self.table_lineage_graph`.
If `self.table_lineage_graph` only contains `DATASET_CLASSES` (Path, Table), then `source_tables` should only contain `Path` or `Table` objects.

Wait, let's look at my reproduction output again.
```
Source Tables: [Table: <default>.foo, Column: <default>.foo.col]
Target Tables: [Table: <default>.foo, Column: <default>.foo.col]
```
The objects in the list are `Table: <default>.foo` and `Column: <default>.foo.col`.
This means `Column` objects ARE in `self.table_lineage_graph`.

But `table_lineage_graph` is:
```python
        table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)]
        return self.graph.subgraph(table_nodes)
```
And `DATASET_CLASSES = (Path, Table)`.

Let's check `sqllineage/core/models.py` to see if `Column` inherits from `Table` or `Path`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/models.py"
}
Result of read_file 4,606 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/models.py",
  "content": "import warnings\nfrom typing import Dict, List, Optional, Set, Union\n\nfrom sqlparse import tokens as T\nfrom sqlparse.engine import grouping\nfrom sqlparse.sql import (\n    Case,\n    Comparison,\n    Function,\n    Identifier,\n    IdentifierList,\n    Operation,\n    Parenthesis,\n    Token,\n    TokenList,\n)\nfrom sqlparse.utils import imt\n\nfrom sqllineage.exceptions import SQLLineageException\nfrom sqllineage.utils.entities import ColumnQualifierTuple\nfrom sqllineage.utils.helpers import escape_identifier_name\nfrom sqllineage.utils.sqlparse import get_parameters, is_subquery\n\n\nclass Schema:\n    unknown = \"<default>\"\n\n    def __init__(self, name: str = unknown):\n        \"\"\"\n        Data Class for Schema\n\n        :param name: schema name\n        \"\"\"\n        self.raw_name = escape_identifier_name(name)\n\n    def __str__(self):\n        return self.raw_name.lower()\n\n    def __repr__(self):\n        return \"Schema: \" + str(self)\n\n    def __eq__(self, other):\n        return type(self) is type(other) and str(self) == str(other)\n\n    def __hash__(self):\n        return hash(str(self))\n\n    def __bool__(self):\n        return str(self) != self.unknown\n\n\nclass Table:\n    def __init__(self, name: str, schema: Schema = Schema(), **kwargs):\n        \"\"\"\n        Data Class for Table\n\n        :param name: table name\n        :param schema: schema as defined by :class:`Schema`\n        \"\"\"\n        if \".\" not in name:\n            self.schema = schema\n            self.raw_name = escape_identifier_name(name)\n        else:\n            schema_name, table_name = name.rsplit(\".\", 1)\n            if len(schema_name.split(\".\")) > 2:\n                # allow db.schema as schema_name, but a.b.c as schema_name is forbidden\n                raise SQLLineageException(\"Invalid format for table name: %s.\", name)\n            self.schema = Schema(schema_name)\n            self.raw_name = escape_identifier_name(table_name)\n            if schema:\n                warnings.warn(\"Name is in schema.table format, schema param is ignored\")\n        self.alias = kwargs.pop(\"alias\", self.raw_name)\n\n    def __str__(self):\n        return f\"{self.schema}.{self.raw_name.lower()}\"\n\n    def __repr__(self):\n        return \"Table: \" + str(self)\n\n    def __eq__(self, other):\n        return type(self) is type(other) and str(self) == str(other)\n\n    def __hash__(self):\n        return hash(str(self))\n\n    @staticmethod\n    def of(identifier: Identifier) -> \"Table\":\n        # rewrite identifier's get_real_name method, by matching the last dot instead of the first dot, so that the\n        # real name for a.b.c will be c instead of b\n        dot_idx, _ = identifier._token_matching(\n            lambda token: imt(token, m=(T.Punctuation, \".\")),\n            start=len(identifier.tokens),\n            reverse=True,\n        )\n        real_name = identifier._get_first_name(dot_idx, real_name=True)\n        # rewrite identifier's get_parent_name accordingly\n        parent_name = (\n            \"\".join(\n                [\n                    escape_identifier_name(token.value)\n                    for token in identifier.tokens[:dot_idx]\n                ]\n            )\n            if dot_idx\n            else None\n        )\n        schema = Schema(parent_name) if parent_name is not None else Schema()\n        alias = identifier.get_alias()\n        kwargs = {\"alias\": alias} if alias else {}\n        return Table(real_name, schema, **kwargs)\n\n\nclass Path:\n    def __init__(self, uri: str):\n        self.uri = escape_identifier_name(uri)\n\n    def __str__(self):\n        return self.uri\n\n    def __repr__(self):\n        return \"Path: \" + str(self)\n\n    def __eq__(self, other):\n        return type(self) is type(other) and self.uri == other.uri\n\n    def __hash__(self):\n        return hash(self.uri)\n\n\nclass Partition:\n    pass\n\n\nclass SubQuery:\n    def __init__(self, token: Parenthesis, alias: Optional[str]):\n        \"\"\"\n        Data Class for SubQuery\n\n        :param token: subquery token\n        :param alias: subquery name\n        \"\"\"\n        self.token = token\n        self._query = token.value\n        self.alias = alias if alias is not None else f\"subquery_{hash(self)}\"\n\n    def __str__(self):\n        return self.alias\n\n    def __repr__(self):\n        return \"SubQuery: \" + str(self)",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 348,
  "is_truncated": true
}
Generated tokens 611 tokens · stopped: STOP
Looking at `SQLLineageHolder.table_lineage_graph`: ```python @property def table_lineage_graph(self) -> DiGraph: \"\"\"\n The table level DiGraph held by SQLLineageHolder\n \"\"\"\n table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)]\n return self.graph.subgraph(table_nodes)\n``` And `DATASET_CLASSES = (Path, Table)`. Wait, if `Table` is what we want, why is `Column` showing up in `source_tables`? Let's look at `SQLLineageHolder.source_tables`: ```python @property def source_tables(self) -> Set[Table]: \"\"\"\n a list of source :class:`sqllineage.models.Table`\n \"\"\"\n source_tables = {\n table for table, deg in self.table_lineage_graph.in_degree if deg == 0\n }.intersection(\n {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n )\n source_tables |= self._selfloop_tables\n source_tables |= self._sourceonly_tables\n return source_tables ``` And `source_tables` depends on `self.table_lineage_graph`. If `self.table_lineage_graph` only contains `DATASET_CLASSES` (Path, Table), then `source_tables` should only contain `Path` or `Table` objects. Wait, let's look at my reproduction output again. ``` Source Tables: [Table: <default>.foo, Column: <default>.foo.col] Target Tables: [Table: <default>.foo, Column: <default>.foo.col] ``` The objects in the list are `Table: <default>.foo` and `Column: <default>.foo.col`. This means `Column` objects ARE in `self.table_lineage_graph`. But `table_lineage_graph` is: ```python table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)] return self.graph.subgraph(table_nodes) ``` And `DATASET_CLASSES = (Path, Table)`. Let's check `sqllineage/core/models.py` to see if `Column` inherits from `Table` or `Path`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/models.py<|"|>}<tool_call|><|tool_response>
Turn 7at 84 s57 tokens out11,170 prompt tokens
I need to see the `Column` class in `sqllineage/core/models.py`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/models.py",
  "start_line\"": 151
}
Result of read_file 4,606 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/models.py",
  "content": "import warnings\nfrom typing import Dict, List, Optional, Set, Union\n\nfrom sqlparse import tokens as T\nfrom sqlparse.engine import grouping\nfrom sqlparse.sql import (\n    Case,\n    Comparison,\n    Function,\n    Identifier,\n    IdentifierList,\n    Operation,\n    Parenthesis,\n    Token,\n    TokenList,\n)\nfrom sqlparse.utils import imt\n\nfrom sqllineage.exceptions import SQLLineageException\nfrom sqllineage.utils.entities import ColumnQualifierTuple\nfrom sqllineage.utils.helpers import escape_identifier_name\nfrom sqllineage.utils.sqlparse import get_parameters, is_subquery\n\n\nclass Schema:\n    unknown = \"<default>\"\n\n    def __init__(self, name: str = unknown):\n        \"\"\"\n        Data Class for Schema\n\n        :param name: schema name\n        \"\"\"\n        self.raw_name = escape_identifier_name(name)\n\n    def __str__(self):\n        return self.raw_name.lower()\n\n    def __repr__(self):\n        return \"Schema: \" + str(self)\n\n    def __eq__(self, other):\n        return type(self) is type(other) and str(self) == str(other)\n\n    def __hash__(self):\n        return hash(str(self))\n\n    def __bool__(self):\n        return str(self) != self.unknown\n\n\nclass Table:\n    def __init__(self, name: str, schema: Schema = Schema(), **kwargs):\n        \"\"\"\n        Data Class for Table\n\n        :param name: table name\n        :param schema: schema as defined by :class:`Schema`\n        \"\"\"\n        if \".\" not in name:\n            self.schema = schema\n            self.raw_name = escape_identifier_name(name)\n        else:\n            schema_name, table_name = name.rsplit(\".\", 1)\n            if len(schema_name.split(\".\")) > 2:\n                # allow db.schema as schema_name, but a.b.c as schema_name is forbidden\n                raise SQLLineageException(\"Invalid format for table name: %s.\", name)\n            self.schema = Schema(schema_name)\n            self.raw_name = escape_identifier_name(table_name)\n            if schema:\n                warnings.warn(\"Name is in schema.table format, schema param is ignored\")\n        self.alias = kwargs.pop(\"alias\", self.raw_name)\n\n    def __str__(self):\n        return f\"{self.schema}.{self.raw_name.lower()}\"\n\n    def __repr__(self):\n        return \"Table: \" + str(self)\n\n    def __eq__(self, other):\n        return type(self) is type(other) and str(self) == str(other)\n\n    def __hash__(self):\n        return hash(str(self))\n\n    @staticmethod\n    def of(identifier: Identifier) -> \"Table\":\n        # rewrite identifier's get_real_name method, by matching the last dot instead of the first dot, so that the\n        # real name for a.b.c will be c instead of b\n        dot_idx, _ = identifier._token_matching(\n            lambda token: imt(token, m=(T.Punctuation, \".\")),\n            start=len(identifier.tokens),\n            reverse=True,\n        )\n        real_name = identifier._get_first_name(dot_idx, real_name=True)\n        # rewrite identifier's get_parent_name accordingly\n        parent_name = (\n            \"\".join(\n                [\n                    escape_identifier_name(token.value)\n                    for token in identifier.tokens[:dot_idx]\n                ]\n            )\n            if dot_idx\n            else None\n        )\n        schema = Schema(parent_name) if parent_name is not None else Schema()\n        alias = identifier.get_alias()\n        kwargs = {\"alias\": alias} if alias else {}\n        return Table(real_name, schema, **kwargs)\n\n\nclass Path:\n    def __init__(self, uri: str):\n        self.uri = escape_identifier_name(uri)\n\n    def __str__(self):\n        return self.uri\n\n    def __repr__(self):\n        return \"Path: \" + str(self)\n\n    def __eq__(self, other):\n        return type(self) is type(other) and self.uri == other.uri\n\n    def __hash__(self):\n        return hash(self.uri)\n\n\nclass Partition:\n    pass\n\n\nclass SubQuery:\n    def __init__(self, token: Parenthesis, alias: Optional[str]):\n        \"\"\"\n        Data Class for SubQuery\n\n        :param token: subquery token\n        :param alias: subquery name\n        \"\"\"\n        self.token = token\n        self._query = token.value\n        self.alias = alias if alias is not None else f\"subquery_{hash(self)}\"\n\n    def __str__(self):\n        return self.alias\n\n    def __repr__(self):\n        return \"SubQuery: \" + str(self)",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 348,
  "is_truncated": true
}
Generated tokens 57 tokens · stopped: STOP
I need to see the `Column` class in `sqllineage/core/models.py`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/models.py<|"|>,start_line": 151}<tool_call|><|tool_response>
Turn 8at 90 s63 tokens out12,605 prompt tokens
Wait, I asked for `start_line=151` but I got lines 1 to 150 again. My apologies.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/models.py",
  "start_line": 151
}
Result of read_file 6,008 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/models.py",
  "content": "\n    def __eq__(self, other):\n        return type(self) is type(other) and self._query == other._query\n\n    def __hash__(self):\n        return hash(self._query)\n\n    @staticmethod\n    def of(parenthesis: Parenthesis, alias: Optional[str]) -> \"SubQuery\":\n        return SubQuery(parenthesis, alias)\n\n\nclass Column:\n    def __init__(self, name: str, **kwargs):\n        \"\"\"\n        Data Class for Column\n\n        :param name: column name\n        :param parent: :class:`Table` or :class:`SubQuery`\n        :param kwargs:\n        \"\"\"\n        self._parent: Set[Union[Table, SubQuery]] = set()\n        self.raw_name = escape_identifier_name(name)\n        self.source_columns = kwargs.pop(\"source_columns\", ((self.raw_name, None),))\n\n    def __str__(self):\n        return (\n            f\"{self.parent}.{self.raw_name.lower()}\"\n            if self.parent is not None and not isinstance(self.parent, Path)\n            else f\"{self.raw_name.lower()}\"\n        )\n\n    def __repr__(self):\n        return \"Column: \" + str(self)\n\n    def __eq__(self, other):\n        return type(self) is type(other) and str(self) == str(other)\n\n    def __hash__(self):\n        return hash(str(self))\n\n    @property\n    def parent(self) -> Optional[Union[Table, SubQuery]]:\n        return list(self._parent)[0] if len(self._parent) == 1 else None\n\n    @parent.setter\n    def parent(self, value: Union[Table, SubQuery]):\n        self._parent.add(value)\n\n    @property\n    def parent_candidates(self) -> List[Union[Table, SubQuery]]:\n        return sorted(self._parent, key=lambda p: str(p))\n\n    @staticmethod\n    def of(token: Token):\n        if isinstance(token, Identifier):\n            alias = token.get_alias()\n            if alias:\n                # handle column alias, including alias for column name or Case, Function\n                kw_idx, kw = token.token_next_by(m=(T.Keyword, \"AS\"))\n                if kw_idx is None:\n                    # alias without AS\n                    kw_idx, _ = token.token_next_by(i=Identifier)\n                if kw_idx is None:\n                    # invalid syntax: col AS, without alias\n                    return Column(alias)\n                else:\n                    idx, _ = token.token_prev(kw_idx, skip_cm=True)\n                    expr = grouping.group(TokenList(token.tokens[: idx + 1]))[0]\n                    source_columns = Column._extract_source_columns(expr)\n                    return Column(alias, source_columns=source_columns)\n            else:\n                # select column name directly without alias\n                return Column(\n                    token.get_real_name(),\n                    source_columns=((token.get_real_name(), token.get_parent_name()),),\n                )\n        else:\n            # Wildcard, Case, Function without alias (thus not recognized as an Identifier)\n            source_columns = Column._extract_source_columns(token)\n            return Column(token.value, source_columns=source_columns)\n\n    @staticmethod\n    def _extract_source_columns(token: Token) -> List[ColumnQualifierTuple]:\n        if isinstance(token, Function):\n            # max(col1) AS col2\n            source_columns = [\n                cqt\n                for tk in get_parameters(token)\n                for cqt in Column._extract_source_columns(tk)\n            ]\n        elif isinstance(token, Parenthesis):\n            if is_subquery(token):\n                # This is to avoid circular import\n                from sqllineage.runner import LineageRunner\n\n                # (SELECT avg(col1) AS col1 FROM tab3), used after WHEN or THEN in CASE clause\n                src_cols = [\n                    lineage[0]\n                    for lineage in LineageRunner(token.value).get_column_lineage(\n                        exclude_subquery=False\n                    )\n                ]\n                source_columns = [\n                    ColumnQualifierTuple(src_col.raw_name, src_col.parent.raw_name)\n                    for src_col in src_cols\n                ]\n            else:\n                # (col1 + col2) AS col3\n                source_columns = [\n                    cqt\n                    for tk in token.tokens[1:-1]\n                    for cqt in Column._extract_source_columns(tk)\n                ]\n        elif isinstance(token, Operation):\n            # col1 + col2 AS col3\n            source_columns = [\n                cqt\n                for tk in token.get_sublists()\n                for cqt in Column._extract_source_columns(tk)\n            ]\n        elif isinstance(token, Case):\n            # CASE WHEN col1 = 2 THEN \"V1\" WHEN col1 = \"2\" THEN \"V2\" END AS col2\n            source_columns = [\n                cqt\n                for tk in token.get_sublists()\n                for cqt in Column._extract_source_columns(tk)\n            ]\n        elif isinstance(token, Comparison):\n            source_columns = Column._extract_source_columns(\n                token.left\n            ) + Column._extract_source_columns(token.right)\n        elif isinstance(token, IdentifierList):\n            source_columns = [\n                cqt\n                for tk in token.get_sublists()\n                for cqt in Column._extract_source_columns(tk)\n            ]\n        elif isinstance(token, Identifier):\n            if token.get_real_name():\n                # col1 AS col2\n                source_columns = [\n                    ColumnQualifierTuple(token.get_real_name(), token.get_parent_name())\n                ]\n            else:\n                # col1=1 AS int\n                source_columns = [\n                    cqt\n                    for tk in token.get_sublists()\n                    for cqt in Column._extract_source_columns(tk)",
  "start_line": 151,
  "end_line": 300,
  "total_lines": 348,
  "is_truncated": true
}
Generated tokens 63 tokens · stopped: STOP
Wait, I asked for `start_line=151` but I got lines 1 to 150 again. My apologies.<channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/models.py<|"|>,start_line:151}<tool_call|><|tool_response>
Turn 9at 167 s1,235 tokens out14,270 prompt tokens
`Column` does NOT inherit from `Table`.

So if `Column` objects are appearing in `source_tables` and `target_tables`, and those are derived from `self.table_lineage_graph`, then `self.table_lineage_graph` must contain `Column` objects.

Wait, let's re-read `SQLLineageHolder.table_lineage_graphs`:
```python
    @property
    def table_lineage_graph(self) -> DiGraph:
        \"\"\"\n        The table level DiGraph held by SQLLineageHolder\n        \"\"\"\n        table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)]\n        return self.graph.subgraph(table_nodes)
```
And `DATASET_CLASSES = (Path, Table)`.

If `Column` objects are showing up in the reproduction output, then `isinstance(Column(...), (Path, Table))` must be `True`. But `Column` doesn't inherit from either.

Let me re-verify my reproduction.
```
Source Tables: [Table: <default>.foo, Column: <default>.foo.col]
Target Tables: [Table: <default>.foo, Column: <default>.foo.col]
```
This means `self.source_tables` and `self.target_tables` contains `Column` objects.

Let's look at how `self.source_tables` is computed again:
```python
    @property
    def source_tables(self) -> Set[Table]:
        \"\"\"\n        a list of source :class:`sqllineage.models.Table`\n        \"\"\"\n        source_tables = {\n            table for table, deg in self.table_lineage_graph.in_degree if deg == 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n        )\n        source_tables |= self._selfloop_tables\n        source_tables |= self._sourceonly_tables\n        return source_tables
```
Wait! `self._selfloop_tables` and `self._sourceonly_tables` are added using `|=`.
And they are initialized here:
```python
    def __init__(self, graph: DiGraph):
        self.graph = graph
        self._selfloop_tables = self.__retrieve_tag_tables(NodeTag.SELFLOOP)
        self._sourceonly_tables = self.__retrieve_tag_tables(NodeTag.SOURCE_ONLY)
        self._targetonly_tables = self.__retrieve_tag_tables(NodeTag.TARGET_ONLY)
```
And `__retrieve_tag_tables` is:
```python
    def __retrieve_tag_tables(self, tag) -> Set[Table]:
        return {\n            table\n            for table, attr in self.graph.nodes(data=True)\n            if attr.get(tag) is True\n        }
```
`self.graph` contains ALL nodes, including `Column` nodes.
If a `Column` node has `NodeTag.SELFLOOP` or `NodeTag.SOURCE_ONLY` or `NodeTag.TARGET_ONLY`, it will be included in `_selfloop_tables`, etc.

Now let's see where these tags are added.
In `SQLLineageHolder.of`:
```python
        for table in {e[0] for e in nx.selfloop_edges(g)}:
            g.nodes[table][NodeTag.SELFLOOP] = True
```
`nx.selfloop_edges(g)` returns all edges that start and end at the same node.
If there is an edge from a `Column` node to itself, then `g.nodes[column][NodeTag.SELFLOOP] = True`.

Wait, let's see why there would be a self-loop edge for a `Column` node.
In `SubQueryLineageHolder.add_column_lineage`:
```python
    def add_column_lineage(self, src: Column, tgt: Column) -> None:
        self.graph.add_edge(src, tgt, type=EdgeType.LINEAGE)
        self.graph.add_edge(tgt.parent, tgt, type=EdgeType.HAS_COLUMN)
        if src.parent is not None:
            # starting NetworkX v2.6, None is not allowed as node, so https://github.com/networkx/networkx/pull/4892
            self.graph.add_edge(src.parent, src, type=EdgeType.HAS_COLUMN)
```

But if `src == tgt`, then `self.graph.add_edge(src, tgt, type=EdgeType.LINEAGE)` is a self-loop.
In the case: `INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL`, the `col` in `SELECT col` is the same as the `col` in `INSERT OVERWRITE TABLE foo`.
Wait, are they the same object?

Usually, `sqllineage` creates `Column` objects. If it's the same column name for the same table, it might be the same object.

Let's check how `LineageAnalyzer` handles this.
TOOL CALL · run_command
{
  "command": "grep -rn \"analyze\" sqllineage/core/analyzer.py"
}
Result of run_command 245 characters
{
  "status": "ok",
  "stdout": "32:    def analyze(self, stmt: Statement) -> StatementLineageHolder:\n34:        to analyze the Statement and store the result into :class:`sqllineage.holders.StatementLineageHolder`.\n",
  "stderr": "",
  "exit_code": 0
}
Generated tokens 1,235 tokens · stopped: STOP
`Column` does NOT inherit from `Table`. So if `Column` objects are appearing in `source_tables` and `target_tables`, and those are derived from `self.table_lineage_graph`, then `self.table_lineage_graph` must contain `Column` objects. Wait, let's re-read `SQLLineageHolder.table_lineage_graphs`: ```python @property def table_lineage_graph(self) -> DiGraph: \"\"\"\n The table level DiGraph held by SQLLineageHolder\n \"\"\"\n table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)]\n return self.graph.subgraph(table_nodes) ``` And `DATASET_CLASSES = (Path, Table)`. If `Column` objects are showing up in the reproduction output, then `isinstance(Column(...), (Path, Table))` must be `True`. But `Column` doesn't inherit from either. Let me re-verify my reproduction. ``` Source Tables: [Table: <default>.foo, Column: <default>.foo.col] Target Tables: [Table: <default>.foo, Column: <default>.foo.col] ``` This means `self.source_tables` and `self.target_tables` contains `Column` objects. Let's look at how `self.source_tables` is computed again: ```python @property def source_tables(self) -> Set[Table]: \"\"\"\n a list of source :class:`sqllineage.models.Table`\n \"\"\"\n source_tables = {\n table for table, deg in self.table_lineage_graph.in_degree if deg == 0\n }.intersection(\n {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n )\n source_tables |= self._selfloop_tables\n source_tables |= self._sourceonly_tables\n return source_tables ``` Wait! `self._selfloop_tables` and `self._sourceonly_tables` are added using `|=`. And they are initialized here: ```python def __init__(self, graph: DiGraph): self.graph = graph self._selfloop_tables = self.__retrieve_tag_tables(NodeTag.SELFLOOP) self._sourceonly_tables = self.__retrieve_tag_tables(NodeTag.SOURCE_ONLY) self._targetonly_tables = self.__retrieve_tag_tables(NodeTag.TARGET_ONLY) ``` And `__retrieve_tag_tables` is: ```python def __retrieve_tag_tables(self, tag) -> Set[Table]: return {\n table\n for table, attr in self.graph.nodes(data=True)\n if attr.get(tag) is True\n } ``` `self.graph` contains ALL nodes, including `Column` nodes. If a `Column` node has `NodeTag.SELFLOOP` or `NodeTag.SOURCE_ONLY` or `NodeTag.TARGET_ONLY`, it will be included in `_selfloop_tables`, etc. Now let's see where these tags are added. In `SQLLineageHolder.of`: ```python for table in {e[0] for e in nx.selfloop_edges(g)}: g.nodes[table][NodeTag.SELFLOOP] = True ``` `nx.selfloop_edges(g)` returns all edges that start and end at the same node. If there is an edge from a `Column` node to itself, then `g.nodes[column][NodeTag.SELFLOOP] = True`. Wait, let's see why there would be a self-loop edge for a `Column` node. In `SubQueryLineageHolder.add_column_lineage`: ```python def add_column_lineage(self, src: Column, tgt: Column) -> None: self.graph.add_edge(src, tgt, type=EdgeType.LINEAGE) self.graph.add_edge(tgt.parent, tgt, type=EdgeType.HAS_COLUMN) if src.parent is not None: # starting NetworkX v2.6, None is not allowed as node, so https://github.com/networkx/networkx/pull/4892 self.graph.add_edge(src.parent, src, type=EdgeType.HAS_COLUMN) ``` But if `src == tgt`, then `self.graph.add_edge(src, tgt, type=EdgeType.LINEAGE)` is a self-loop. In the case: `INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL`, the `col` in `SELECT col` is the same as the `col` in `INSERT OVERWRITE TABLE foo`. Wait, are they the same object? Usually, `sqllineage` creates `Column` objects. If it's the same column name for the same table, it might be the same object. Let's check how `LineageAnalyzer` handles this.<channel|><|tool_call>call:run_command{command:<|"|>grep -rn "analyze" sqllineage/core/analyzer.py<|"|>}<tool_call|><|tool_response>
Turn 10at 169 s42 tokens out15,594 prompt tokens
Let's read `sqllineage/core/analyzer.py`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/analyzer.py"
}
Result of read_file 6,218 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/analyzer.py",
  "content": "from functools import reduce\nfrom operator import add\nfrom typing import List, NamedTuple, Optional, Set, Union\n\nfrom sqlparse.sql import (\n    Comment,\n    Function,\n    Identifier,\n    IdentifierList,\n    Statement,\n    TokenList,\n    Where,\n)\n\nfrom sqllineage.core.handlers.base import (\n    CurrentTokenBaseHandler,\n    NextTokenBaseHandler,\n)\nfrom sqllineage.core.holders import StatementLineageHolder, SubQueryLineageHolder\nfrom sqllineage.core.models import SubQuery, Table\nfrom sqllineage.utils.sqlparse import get_subquery_parentheses, is_subquery\n\n\nclass AnalyzerContext(NamedTuple):\n    subquery: Optional[SubQuery] = None\n    prev_cte: Optional[Set[SubQuery]] = None\n\n\nclass LineageAnalyzer:\n    \"\"\"SQL Statement Level Lineage Analyzer.\"\"\"\n\n    def analyze(self, stmt: Statement) -> StatementLineageHolder:\n        \"\"\"\n        to analyze the Statement and store the result into :class:`sqllineage.holders.StatementLineageHolder`.\n\n        :param stmt: a SQL statement parsed by `sqlparse`\n        \"\"\"\n        if (\n            stmt.get_type() == \"DELETE\"\n            or stmt.token_first(skip_cm=True).normalized == \"TRUNCATE\"\n            or stmt.token_first(skip_cm=True).normalized.upper() == \"REFRESH\"\n            or stmt.token_first(skip_cm=True).normalized == \"CACHE\"\n            or stmt.token_first(skip_cm=True).normalized.upper() == \"UNCACHE\"\n            or stmt.token_first(skip_cm=True).normalized == \"SHOW\"\n        ):\n            holder = StatementLineageHolder()\n        elif stmt.get_type() == \"DROP\":\n            holder = self._extract_from_ddl_drop(stmt)\n        elif stmt.get_type() == \"ALTER\":\n            holder = self._extract_from_ddl_alter(stmt)\n        else:\n            # DML parsing logic also applies to CREATE DDL\n            holder = StatementLineageHolder.of(\n                self._extract_from_dml(stmt, AnalyzerContext())\n            )\n        return holder\n\n    @classmethod\n    def _extract_from_ddl_drop(cls, stmt: Statement) -> StatementLineageHolder:\n        holder = StatementLineageHolder()\n        for table in {Table.of(t) for t in stmt.tokens if isinstance(t, Identifier)}:\n            holder.add_drop(table)\n        return holder\n\n    @classmethod\n    def _extract_from_ddl_alter(cls, stmt: Statement) -> StatementLineageHolder:\n        holder = StatementLineageHolder()\n        tables = [Table.of(t) for t in stmt.tokens if isinstance(t, Identifier)]\n        keywords = [t for t in stmt.tokens if t.is_keyword]\n        if any(k.normalized == \"RENAME\" for k in keywords) and len(tables) == 2:\n            holder.add_rename(tables[0], tables[1])\n        if any(k.normalized == \"EXCHANGE\" for k in keywords) and len(tables) == 2:\n            holder.add_write(tables[0])\n            holder.add_read(tables[1])\n        return holder\n\n    @classmethod\n    def _extract_from_dml(\n        cls, token: TokenList, context: AnalyzerContext\n    ) -> SubQueryLineageHolder:\n        holder = SubQueryLineageHolder()\n        if context.prev_cte is not None:\n            # CTE can be referenced by subsequent CTEs\n            for cte in context.prev_cte:\n                holder.add_cte(cte)\n        if context.subquery is not None:\n            # If within subquery, then manually add subquery as target table\n            holder.add_write(context.subquery)\n        current_handlers = [\n            handler_cls() for handler_cls in CurrentTokenBaseHandler.__subclasses__()\n        ]\n        next_handlers = [\n            handler_cls() for handler_cls in NextTokenBaseHandler.__subclasses__()\n        ]\n\n        subqueries = []\n        for sub_token in token.tokens:\n            if cls.__token_negligible_before_tablename(sub_token):\n                continue\n\n            for sq in cls.parse_subquery(sub_token):\n                # Collecting subquery on the way, hold on parsing until last\n                # so that each handler don't have to worry about what's inside subquery\n                subqueries.append(sq)\n\n            for current_handler in current_handlers:\n                current_handler.handle(sub_token, holder)\n\n            if sub_token.is_keyword:\n                for next_handler in next_handlers:\n                    next_handler.indicate(sub_token)\n                continue\n\n            for next_handler in next_handlers:\n                if next_handler.indicator:\n                    next_handler.handle(sub_token, holder)\n        else:\n            # call end of query hook here as loop is over\n            for next_handler in next_handlers:\n                next_handler.end_of_query_cleanup(holder)\n        # By recursively extracting each subquery of the parent and merge, we're doing Depth-first search\n        for sq in subqueries:\n            holder |= cls._extract_from_dml(sq.token, AnalyzerContext(sq, holder.cte))\n        return holder\n\n    @classmethod\n    def __token_negligible_before_tablename(cls, token: TokenList) -> bool:\n        return token.is_whitespace or isinstance(token, Comment)\n\n    @classmethod\n    def parse_subquery(cls, token: TokenList) -> List[SubQuery]:\n        result = []\n        if isinstance(token, (Identifier, Function, Where)):\n            # usually SubQuery is an Identifier, but not all Identifiers are SubQuery\n            # Function for CTE without AS keyword\n            result = cls._parse_subquery(token)\n        elif isinstance(token, IdentifierList):\n            # IdentifierList for SQL89 style of JOIN or multiple CTEs, this is actually SubQueries\n            result = reduce(\n                add,\n                [\n                    cls._parse_subquery(identifier)\n                    for identifier in token.get_sublists()\n                ],\n                [],\n            )\n        elif is_subquery(token):\n            # Parenthesis for SubQuery without alias, this is valid syntax for certain SQL dialect\n            result = [SubQuery.of(token, None)]\n        return result",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 162,
  "is_truncated": true
}
Generated tokens 42 tokens · stopped: STOP
Let's read `sqllineage/core/analyzer.py`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/analyzer.py<|"|>}<tool_call|><|tool_response>
Turn 11at 251 s93 tokens out7,110 prompt tokens
The `Analyzer` uses handlers to populate the `holder`.
The handlers likely call `holder.add_read` and `holder.add_write`.
`SubQueryLineageHolder` inherits from `SQLLineageHolder`.

Let's look at `sqllineage/core/holders.py`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/holders.py"
}
Result of read_file 5,712 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/holders.py",
  "content": "import itertools\nfrom typing import Set, Tuple, Union\n\nimport networkx as nx\nfrom networkx import DiGraph\n\nfrom sqllineage.core.models import Column, Path, SubQuery, Table\nfrom sqllineage.utils.constant import EdgeType, NodeTag\n\nDATASET_CLASSES = (Path, Table)\n\n\nclass ColumnLineageMixin:\n    def get_column_lineage(self, exclude_subquery=True) -> Set[Tuple[Column, ...]]:\n        self.graph: DiGraph  # For mypy attribute checking\n        # filter all the column node in the graph\n        column_nodes = [n for n in self.graph.nodes if isinstance(n, Column)]\n        column_graph = self.graph.subgraph(column_nodes)\n        source_columns = {column for column, deg in column_graph.in_degree if deg == 0}\n        # if a column lineage path ends at SubQuery, then it should be pruned\n        target_columns = {\n            node\n            for node, deg in column_graph.out_degree\n            if isinstance(node, Column) and deg == 0\n        }\n        if exclude_subquery:\n            target_columns = {\n                node for node in target_columns if isinstance(node.parent, Table)\n            }\n        columns = set()\n        for (source, target) in itertools.product(source_columns, target_columns):\n            simple_paths = list(nx.all_simple_paths(self.graph, source, target))\n            if len(simple_paths) == 1:\n                columns.add(tuple(simple_paths[0]))\n            # we can ignore when simple path doesn't exist, but could there be more than one simple path?\n        return columns\n\n\nclass SubQueryLineageHolder(ColumnLineageMixin):\n    \"\"\"\n    SubQuery/Query Level Lineage Result.\n\n    SubQueryLineageHolder will hold attributes like read, write, cte\n\n    Each of them is a Set[:class:`sqllineage.models.Table`].\n\n    This is the most atomic representation of lineage result.\n    \"\"\"\n\n    def __init__(self) -> None:\n        self.graph = nx.DiGraph()\n\n    def __or__(self, other):\n        self.graph = nx.compose(self.graph, other.graph)\n        return self\n\n    def _property_getter(self, prop) -> Set[Union[SubQuery, Table]]:\n        return {t for t, attr in self.graph.nodes(data=True) if attr.get(prop) is True}\n\n    def _property_setter(self, value, prop) -> None:\n        self.graph.add_node(value, **{prop: True})\n\n    @property\n    def read(self) -> Set[Union[SubQuery, Table]]:\n        return self._property_getter(NodeTag.READ)\n\n    def add_read(self, value) -> None:\n        self._property_setter(value, NodeTag.READ)\n        # the same table can be added (in SQL: joined) multiple times with different alias\n        if hasattr(value, \"alias\"):\n            self.graph.add_edge(value, value.alias, type=EdgeType.HAS_ALIAS)\n\n    @property\n    def write(self) -> Set[Union[SubQuery, Table]]:\n        return self._property_getter(NodeTag.WRITE)\n\n    def add_write(self, value) -> None:\n        self._property_setter(value, NodeTag.WRITE)\n\n    @property\n    def cte(self) -> Set[SubQuery]:\n        return self._property_getter(NodeTag.CTE)  # type: ignore\n\n    def add_cte(self, value) -> None:\n        self._property_setter(value, NodeTag.CTE)\n\n    def add_column_lineage(self, src: Column, tgt: Column) -> None:\n        self.graph.add_edge(src, tgt, type=EdgeType.LINEAGE)\n        self.graph.add_edge(tgt.parent, tgt, type=EdgeType.HAS_COLUMN)\n        if src.parent is not None:\n            # starting NetworkX v2.6, None is not allowed as node, see https://github.com/networkx/networkx/pull/4892\n            self.graph.add_edge(src.parent, src, type=EdgeType.HAS_COLUMN)\n\n\nclass StatementLineageHolder(SubQueryLineageHolder, ColumnLineageMixin):\n    \"\"\"\n    Statement Level Lineage Result.\n\n    Based on SubQueryLineageHolder, StatementLineageHolder holds extra attributes like drop and rename\n\n    For drop, it is a Set[:class:`sqllineage.models.Table`].\n\n    For rename, it a Set[Tuple[:class:`sqllineage.models.Table`, :class:`sqllineage.models.Table`]], with the first\n    table being original table before renaming and the latter after renaming.\n    \"\"\"\n\n    def __str__(self):\n        return \"\\n\".join(\n            f\"table {attr}: {sorted(getattr(self, attr), key=lambda x: str(x)) if getattr(self, attr) else '[]'}\"\n            for attr in [\"read\", \"write\", \"cte\", \"drop\", \"rename\"]\n        )\n\n    def __repr__(self):\n        return str(self)\n\n    @property\n    def read(self) -> Set[Table]:  # type: ignore\n        return {t for t in super().read if isinstance(t, DATASET_CLASSES)}\n\n    @property\n    def write(self) -> Set[Table]:  # type: ignore\n        return {t for t in super().write if isinstance(t, DATASET_CLASSES)}\n\n    @property\n    def drop(self) -> Set[Table]:\n        return self._property_getter(NodeTag.DROP)  # type: ignore\n\n    def add_drop(self, value) -> None:\n        self._property_setter(value, NodeTag.DROP)\n\n    @property\n    def rename(self) -> Set[Tuple[Table, Table]]:\n        return {\n            (src, tgt)\n            for src, tgt, attr in self.graph.edges(data=True)\n            if attr.get(\"type\") == EdgeType.RENAME\n        }\n\n    def add_rename(self, src: Table, tgt: Table) -> None:\n        self.graph.add_edge(src, tgt, type=EdgeType.RENAME)\n\n    @staticmethod\n    def of(holder: SubQueryLineageHolder):\n        stmt_holder = StatementLineageHolder()\n        stmt_holder.graph = holder.graph\n        return stmt_holder\n\n\nclass SQLLineageHolder(ColumnLineageMixin):\n    def __init__(self, graph: DiGraph):",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 280,
  "is_truncated": true
}
Generated tokens 93 tokens · stopped: STOP
The `Analyzer` uses handlers to populate the `holder`. The handlers likely call `holder.add_read` and `holder.add_write`. `SubQueryLineageHolder` inherits from `SQLLineageHolder`. Let's look at `sqllineage/core/holders.py`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/holders.py<|"|>}<tool_call|><|tool_response>
Turn 12at 256 s64 tokens out8,967 prompt tokens
Wait, I need to see the rest of `sqllineage/core/holders.py` to see `SQLLineageHolder`.
TOOL CALL · read_file
{
  "filepath": "sqllineage/core/holders.py",
  "start_line": 151
}
Result of read_file 5,870 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/holders.py",
  "content": "        \"\"\"\n        The combined lineage result in representation of Directed Acyclic Graph.\n\n        :param graph: the Directed Acyclic Graph holding all the combined lineage result.\n        \"\"\"\n        self.graph = graph\n        self._selfloop_tables = self.__retrieve_tag_tables(NodeTag.SELFLOOP)\n        self._sourceonly_tables = self.__retrieve_tag_tables(NodeTag.SOURCE_ONLY)\n        self._targetonly_tables = self.__retrieve_tag_tables(NodeTag.TARGET_ONLY)\n\n    @property\n    def table_lineage_graph(self) -> DiGraph:\n        \"\"\"\n        The table level DiGraph held by SQLLineageHolder\n        \"\"\"\n        table_nodes = [n for n in self.graph.nodes if isinstance(n, DATASET_CLASSES)]\n        return self.graph.subgraph(table_nodes)\n\n    @property\n    def column_lineage_graph(self) -> DiGraph:\n        \"\"\"\n        The column level DiGraph held by SQLLineageHolder\n        \"\"\"\n        column_nodes = [n for n in self.graph.nodes if isinstance(n, Column)]\n        return self.graph.subgraph(column_nodes)\n\n    @property\n    def source_tables(self) -> Set[Table]:\n        \"\"\"\n        a list of source :class:`sqllineage.models.Table`\n        \"\"\"\n        source_tables = {\n            table for table, deg in self.table_lineage_graph.in_degree if deg == 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n        )\n        source_tables |= self._selfloop_tables\n        source_tables |= self._sourceonly_tables\n        return source_tables\n\n    @property\n    def target_tables(self) -> Set[Table]:\n        \"\"\"\n        a list of target :class:`sqllineage.models.Table`\n        \"\"\"\n        target_tables = {\n            table for table, deg in self.table_lineage_graph.out_degree if deg == 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.in_degree if deg > 0}\n        )\n        target_tables |= self._selfloop_tables\n        target_tables |= self._targetonly_tables\n        return target_tables\n\n    @property\n    def intermediate_tables(self) -> Set[Table]:\n        \"\"\"\n        a list of intermediate :class:`sqllineage.models.Table`\n        \"\"\"\n        intermediate_tables = {\n            table for table, deg in self.table_lineage_graph.in_degree if deg > 0\n        }.intersection(\n            {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}\n        )\n        intermediate_tables -= self.__retrieve_tag_tables(NodeTag.SELFLOOP)\n        return intermediate_tables\n\n    def __retrieve_tag_tables(self, tag) -> Set[Table]:\n        return {\n            table\n            for table, attr in self.graph.nodes(data=True)\n            if attr.get(tag) is True\n        }\n\n    @staticmethod\n    def of(*args: StatementLineageHolder):\n        \"\"\"\n        To assemble multiple :class:`sqllineage.holders.StatementLineageHolder` into\n        :class:`sqllineage.holders.SQLLineageHolder`\n        \"\"\"\n        g = DiGraph()\n        for holder in args:\n            g = nx.compose(g, holder.graph)\n            if holder.drop:\n                for table in holder.drop:\n                    if g.has_node(table) and g.degree[table] == 0:\n                        g.remove_node(table)\n            elif holder.rename:\n                for (table_old, table_new) in holder.rename:\n                    g = nx.relabel_nodes(g, {table_old: table_new})\n                    g.remove_edge(table_new, table_new)\n                    if g.degree[table_new] == 0:\n                        g.remove_node(table_new)\n            else:\n                read, write = holder.read, holder.write\n                if len(read) > 0 and len(write) == 0:\n                    # source only table comes from SELECT statement\n                    g.add_nodes_from(read, **{NodeTag.SOURCE_ONLY: True})\n                elif len(read) == 0 and len(write) > 0:\n                    # target only table comes from case like: 1) INSERT/UPDATE constant values; 2) CREATE TABLE\n                    g.add_nodes_from(write, **{NodeTag.TARGET_ONLY: True})\n                else:\n                    g.add_nodes_from(read)\n                    g.add_nodes_from(write)\n                    for source, target in itertools.product(read, write):\n                        g.add_edge(source, target, type=EdgeType.LINEAGE)\n        for table in {e[0] for e in nx.selfloop_edges(g)}:\n            g.nodes[table][NodeTag.SELFLOOP] = True\n        # find all the columns that we can't assign accurately to a parent table (with multiple parent candidates)\n        unresolved_cols = [\n            (s, t)\n            for s, t in g.edges\n            if isinstance(s, Column) and len(s.parent_candidates) > 1\n        ]\n        for unresolved_col, tgt_col in unresolved_cols:\n            # check if there's only one parent candidate contains the column with same name\n            src_cols = []\n            for parent in unresolved_col.parent_candidates:\n                src_col = Column(unresolved_col.raw_name)\n                src_col.parent = parent\n                if g.has_edge(parent, src_col):\n                    src_cols.append(src_col)\n            if len(src_cols) == 1:\n                g.add_edge(src_cols[0], tgt_col, type=EdgeType.LINEAGE)\n                g.remove_edge(unresolved_col, tgt_col)\n        # when unresolved column got resolved, it will be orphan node, and we can remove it\n        for node in [n for n, deg in g.degree if deg == 0]:\n            if isinstance(node, Column) and len(node.parent_candidates) > 1:\n                g.remove_node(node)\n        return SQLLineageHolder(g)",
  "start_line": 151,
  "end_line": 280,
  "total_lines": 280,
  "is_truncated": false
}
Generated tokens 64 tokens · stopped: STOP
Wait, I need to see the rest of `sqllineage/core/holders.py` to see `SQLLineageHolder`. <channel|><|tool_call>call:read_file{filepath:<|"|>sqllineage/core/holders.py<|"|>,start_line:151}<tool_call|><|tool_response>
Turn 13at 328 s1,266 tokens out10,723 prompt tokens
Found it!

```python
    def __retrieve_tag_tables(self, tag) -> Set[Table]:
        return {
            table
            for table, attr in self.graph.nodes(data=True)
            if attr.get(tag) is True
        }
```
This function does NOT filter by `DATASET_CLASSES`. It returns ANY node that has the tag.

And in `SQLLineageHolder.of`:
```python
        for table in {e[0] for e in nx.selfloop_edges(g)}:
            g.nodes[table][NodeTag.SELFLOOP] = True
```
If there is a self-loop on a `Column` node, it gets `NodeTag.SELFLOOP = True`.
Then `__retrieve_tag_tables(NodeTag.SELFLOOP)` returns it.
Then `source_tables` and `target_tables` include it because they use `self._selfloop_tables`.

So the fix is to ensure `__retrieve_tag_tables` only returns `DATASET_CLASSES`.

Let's check other places where `__retrieve_tag_tables` is used.
It's used in `SQLLineageHolder.__init__`:
```python
        self._selfloop_tables = self.__retrieve_tag_tables(NodeTag.SELFLOOP)
        self._sourceonly_tables = self.__retrieve_tag_tables(NodeTag.SOURCE_ONLY)
        self._targetonly_tables = self.__retrieve_tag_tables(NodeTag.TARGET_ONLY)
```
And it's used in `intermediate_tables`:
```python
        intermediate_tables -= self.__retrieve_tag_tables(NodeTag.SELFLOOP)
```

Wait, if I change `__retrieve_tag_tables` to filter by `DATASET_CLASSES`, will it break anything?
If `NodeTag.SELFLOOP` is only ever intended for tables, then this is correct.
But can columns have `SOURCE_ONLY` or `TARGET_ONLY` tags?
In `SQLLineageHolder.of`:
```python
                if len(read) > 0 and len(write) == 0:
                    # source only table comes from SELECT statement
                    g.add_nodes_from(read, **{NodeTag.SOURCE_ONLY: True})
                elif len(read) == 0 and len(write) > 0:
                    # target only table comes from case like: 1) INSERT/UPDATE constant values; 2) CREATE TABLE
                    g.add_nodes_from(write, **{NodeTag.TARGET_ONLY: True})
```
`read` and `write` come from `holder.read` and `holder.write`, which are already filtered by `DATASET_CLASSES` in `StatementLineageHolder`.
```python
    @property
    def read(self) -> Set[Table]:  # type: ignore
        return {t for t in super().read if isinstance(t, DATASET_CLASSES)}

    @property
    def write(self) -> Set[Table]:  # type: ignore
        return {t for t in super().write if isinstance(t, DATASET_CLASSES)}
```

So `NodeTag.SOURCE_ONLY` and `NodeTag.TARGET_ONLY` are only applied to `DATASET_CLASSES`.
The only one that can be applied to a `Column` is `NodeTag.SELFLOOP` because it's applied to any node in `nx.selfloop_edges(g)`.

So updating `__retrieve_tag_tables` to filter by `DATASET_CLASSES` should be correct.

Let's double check if `DATASET_CLASSES` is available in the scope of `__retrieve_tag_tables`.
Yes, it's defined at the top of `sqllineage/core/holders.py`.

Wait, let's look at `SQLLineageHolder` one more time.
```python
    def __retrieve_tag_tables(self, tag) -> Set[Table]:
        return {
            table
            for table, attr in self.graph.nodes(data=True)
            if attr.get(tag) is True
        }
```
If I change it to:
```python
    def __retrieve_tag_tables(self, tag) -> Set[Table]:
        return {
            table
            for table, attr in self.graph.nodes(data=True)
            if isinstance(table, DATASET_CLASSES) and attr.get(tag) is True
        }
```
This would solve the problem.

Wait, let me check if there are other tags that could be applied to `Column` nodes.
In the provided code for `sqllineage/core/holders.py`, only `NodeTag.SELFLOOP`, `NodeTag.SOURCE_ONLY`, and `NodeTag.TARGET_ONLY` are used as tags on nodes in `SQLLineageHolder.of`.

Is it possible that `__retrieve_tag_tables` is used for something else?
I've seen it used for `SELFLOOP`, `SOURCE_ONLY`, `TARGET_ONLY`.

Wait, what if `Caste` or `Function` or something else was tagged?
But the method name is `__retrieve_tag_tables` and it returns `Set[Table]`.
So it's clearly intended to return tables.

Let's verify if there are any other call sites for `__retrieve_tag_tables` in the whole repository.
TOOL CALL · run_command
{
  "command": "grep -rn \"__retrieve_tag_tables\" sqllineage/"
}
Result of run_command 593 characters
{
  "status": "ok",
  "stdout": "sqllineage/core/holders.py:157:        self._selfloop_tables = self.__retrieve_tag_tables(NodeTag.SELFLOOP)\nsqllineage/core/holders.py:158:        self._sourceonly_tables = self.__retrieve_tag_tables(NodeTag.SOURCE_ONLY)\nsqllineage/core/holders.py:159:        self._targetonly_tables = self.__retrieve_tag_tables(NodeTag.TARGET_ONLY)\nsqllineage/core/holders.py:215:        intermediate_tables -= self.__retrieve_tag_tables(NodeTag.SELFLOOP)\nsqllineage/core/holders.py:218:    def __retrieve_tag_tables(self, tag) -> Set[Table]:\n",
  "stderr": "",
  "exit_code": 0
}
Generated tokens 1,266 tokens · stopped: STOP
Found it! ```python def __retrieve_tag_tables(self, tag) -> Set[Table]: return { table for table, attr in self.graph.nodes(data=True) if attr.get(tag) is True } ``` This function does NOT filter by `DATASET_CLASSES`. It returns ANY node that has the tag. And in `SQLLineageHolder.of`: ```python for table in {e[0] for e in nx.selfloop_edges(g)}: g.nodes[table][NodeTag.SELFLOOP] = True ``` If there is a self-loop on a `Column` node, it gets `NodeTag.SELFLOOP = True`. Then `__retrieve_tag_tables(NodeTag.SELFLOOP)` returns it. Then `source_tables` and `target_tables` include it because they use `self._selfloop_tables`. So the fix is to ensure `__retrieve_tag_tables` only returns `DATASET_CLASSES`. Let's check other places where `__retrieve_tag_tables` is used. It's used in `SQLLineageHolder.__init__`: ```python self._selfloop_tables = self.__retrieve_tag_tables(NodeTag.SELFLOOP) self._sourceonly_tables = self.__retrieve_tag_tables(NodeTag.SOURCE_ONLY) self._targetonly_tables = self.__retrieve_tag_tables(NodeTag.TARGET_ONLY) ``` And it's used in `intermediate_tables`: ```python intermediate_tables -= self.__retrieve_tag_tables(NodeTag.SELFLOOP) ``` Wait, if I change `__retrieve_tag_tables` to filter by `DATASET_CLASSES`, will it break anything? If `NodeTag.SELFLOOP` is only ever intended for tables, then this is correct. But can columns have `SOURCE_ONLY` or `TARGET_ONLY` tags? In `SQLLineageHolder.of`: ```python if len(read) > 0 and len(write) == 0: # source only table comes from SELECT statement g.add_nodes_from(read, **{NodeTag.SOURCE_ONLY: True}) elif len(read) == 0 and len(write) > 0: # target only table comes from case like: 1) INSERT/UPDATE constant values; 2) CREATE TABLE g.add_nodes_from(write, **{NodeTag.TARGET_ONLY: True}) ``` `read` and `write` come from `holder.read` and `holder.write`, which are already filtered by `DATASET_CLASSES` in `StatementLineageHolder`. ```python @property def read(self) -> Set[Table]: # type: ignore return {t for t in super().read if isinstance(t, DATASET_CLASSES)} @property def write(self) -> Set[Table]: # type: ignore return {t for t in super().write if isinstance(t, DATASET_CLASSES)} ``` So `NodeTag.SOURCE_ONLY` and `NodeTag.TARGET_ONLY` are only applied to `DATASET_CLASSES`. The only one that can be applied to a `Column` is `NodeTag.SELFLOOP` because it's applied to any node in `nx.selfloop_edges(g)`. So updating `__retrieve_tag_tables` to filter by `DATASET_CLASSES` should be correct. Let's double check if `DATASET_CLASSES` is available in the scope of `__retrieve_tag_tables`. Yes, it's defined at the top of `sqllineage/core/holders.py`. Wait, let's look at `SQLLineageHolder` one more time. ```python def __retrieve_tag_tables(self, tag) -> Set[Table]: return { table for table, attr in self.graph.nodes(data=True) if attr.get(tag) is True } ``` If I change it to: ```python def __retrieve_tag_tables(self, tag) -> Set[Table]: return { table for table, attr in self.graph.nodes(data=True) if isinstance(table, DATASET_CLASSES) and attr.get(tag) is True } ``` This would solve the problem. Wait, let me check if there are other tags that could be applied to `Column` nodes. In the provided code for `sqllineage/core/holders.py`, only `NodeTag.SELFLOOP`, `NodeTag.SOURCE_ONLY`, and `NodeTag.TARGET_ONLY` are used as tags on nodes in `SQLLineageHolder.of`. Is it possible that `__retrieve_tag_tables` is used for something else? I've seen it used for `SELFLOOP`, `SOURCE_ONLY`, `TARGET_ONLY`. Wait, what if `Caste` or `Function` or something else was tagged? But the method name is `__retrieve_tag_tables` and it returns `Set[Table]`. So it's clearly intended to return tables. Let's verify if there are any other call sites for `__retrieve_tag_tables` in the whole repository. <channel|><|tool_call>call:run_command{command:<|"|>grep -rn "__retrieve_tag_tables" sqllineage/<|"|>}<tool_call|><|tool_response>
Turn 14at 358 s420 tokens out12,215 prompt tokens
It's only used in `SQLLineageHolder`.

Wait, there's one more thing.
If I filter by `DATASET_CLASSES` in `__retrieve_tag_tables`, then `_selfloop_tables` will only contain tables.
Then `source_tables` will be:
```python
        source_tables = {
            table for table, deg in self.table_lineage_graph.in_degree if deg == 0
        }.intersection(
            {table for table, deg in self.table_lineage_graph.out_degree if deg > 0}
        )
        source_tables |= self._selfloop_tables
        source_tables |= self._sourceonly_tables
        return source_tables
```
`self.table_lineage_graph` is already filtered by `DATASET_CLASSES`.
So `source_tables` will only contain `DATASET_CLASSES`.

Similarly for `target_tables`.

This seems to be the correct fix.

Let's implement the reproduction script just to be absolutely sure and then apply the fix.
Wait, I already have a reproduction script in my mind.
Actually, I already ran it in the previous turn's "thought" but the actual tool call was `read_file`.
Wait, did I run the reproduction?
The prompt says: "the agent successfully reproduced the issue using a script", but that was for a previous agent.
I should run it myself to be sure.
TOOL CALL · run_command
{
  "command": "python3 - <<'PY'\nfrom sqllineage.runner import LineageRunner\nsql = \"INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL\"\nrunner = LineageRunner(sql)\nprint(f\"Source Tables: {runner.source_tables}\")\nprint(f\"Target Tables: {runner.target_tables}\")\nPY\n"
}
Result of run_command 192 characters
{
  "status": "ok",
  "stdout": "Source Tables: [Table: <default>.foo, Column: <default>.foo.col]\nTarget Tables: [Table: <default>.foo, Column: <default>.foo.col]\n",
  "stderr": "",
  "exit_code": 0
}
Generated tokens 420 tokens · stopped: STOP
It's only used in `SQLLineageHolder`. Wait, there's one more thing. If I filter by `DATASET_CLASSES` in `__retrieve_tag_tables`, then `_selfloop_tables` will only contain tables. Then `source_tables` will be: ```python source_tables = { table for table, deg in self.table_lineage_graph.in_degree if deg == 0 }.intersection( {table for table, deg in self.table_lineage_graph.out_degree if deg > 0} ) source_tables |= self._selfloop_tables source_tables |= self._sourceonly_tables return source_tables ``` `self.table_lineage_graph` is already filtered by `DATASET_CLASSES`. So `source_tables` will only contain `DATASET_CLASSES`. Similarly for `target_tables`. This seems to be the correct fix. Let's implement the reproduction script just to be absolutely sure and then apply the fix. Wait, I already have a reproduction script in my mind. Actually, I already ran it in the previous turn's "thought" but the actual tool call was `read_file`. Wait, did I run the reproduction? The prompt says: "the agent successfully reproduced the issue using a script", but that was for a previous agent. I should run it myself to be sure. <channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY' from sqllineage.runner import LineageRunner sql = "INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL" runner = LineageRunner(sql) print(f"Source Tables: {runner.source_tables}") print(f"Target Tables: {runner.target_tables}") PY <|"|>}<tool_call|><|tool_response>
Turn 15at 366 s190 tokens out12,715 prompt tokens
Confirmed. The reproduction works.

Now I will apply the fix to `sqllineage/core/holders.py`.
TOOL CALL · edit_file
{
  "filepath": "sqllineage/core/holders.py",
  "new_string": "    def __retrieve_tag_tables(self, tag) -> Set[Table]:\n        return {\n            table\n            for table, attr in self.graph.nodes(data=True)\n            if isinstance(table, DATASET_CLASSES) and attr.get(tag) is True\n        }\n",
  "old_string": "    def __retrieve_tag_tables(self, tag) -> Set[Table]:\n        return {\n            table\n            for table, attr in self.graph.nodes(data=True)\n            if attr.get(tag) is True\n        }\n"
}
Result of edit_file 473 characters
{
  "status": "ok",
  "filepath": "sqllineage/core/holders.py",
  "occurrences": 1,
  "strategy": "exact",
  "diff": "--- a/sqllineage/core/holders.py\n+++ b/sqllineage/core/holders.py\n@@ -219,7 +219,7 @@\n         return {\n             table\n             for table, attr in self.graph.nodes(data=True)\n-            if attr.get(tag) is True\n+            if isinstance(table, DATASET_CLASSES) and attr.get(tag) is True\n         }\n \n     @staticmethod\n",
  "is_truncated": false
}
Generated tokens 190 tokens · stopped: STOP
Confirmed. The reproduction works. Now I will apply the fix to `sqllineage/core/holders.py`. <channel|><|tool_call>call:edit_file{filepath:<|"|>sqllineage/core/holders.py<|"|>,new_string:<|"|> def __retrieve_tag_tables(self, tag) -> Set[Table]: return { table for table, attr in self.graph.nodes(data=True) if isinstance(table, DATASET_CLASSES) and attr.get(tag) is True } <|"|>,old_string:<|"|> def __retrieve_tag_tables(self, tag) -> Set[Table]: return { table for table, attr in self.graph.nodes(data=True) if attr.get(tag) is True } <|"|>}<tool_call|><|tool_response>
Turn 16at 371 s107 tokens out13,083 prompt tokens
Now I will verify the fix with the reproduction script.
TOOL CALL · run_command
{
  "command": "python3 - <<'PY'\nfrom sqllineage.runner import LineageRunner\nsql = \"INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL\"\nrunner = LineageRunner(sql)\nprint(f\"Source Tables: {runner.source_tables}\")\nprint(f\"Target Tables: {runner.target_tables}\")\nPY\n"
}
Result of run_command 138 characters
{
  "status": "ok",
  "stdout": "Source Tables: [Table: <default>.foo]\nTarget Tables: [Table: <default>.foo]\n",
  "stderr": "",
  "exit_code": 0
}
Generated tokens 107 tokens · stopped: STOP
Now I will verify the fix with the reproduction script. <channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY' from sqllineage.runner import LineageRunner sql = "INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL" runner = LineageRunner(sql) print(f"Source Tables: {runner.source_tables}") print(f"Target Tables: {runner.target_tables}") PY <|"|>}<tool_call|><|tool_response>
Turn 17at 379 s141 tokens out13,252 prompt tokens
The reproduction script now passes!

Now I should check if this fix affects other things, such as `column_lineage`.
The original issue was about table and column lineage being mixed up.
Let's check if `column_lineage` still works correctly.
TOOL CALL · run_command
{
  "command": "python3 - <<'PY'\nfrom sqllineage.runner import LineageRunner\nsql = \"INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL\"\nrunner = LineageRunner(sql)\nprint(f\"Column Lineage: {runner.get_column_lineage()}\")\nPY\n"
}
Result of run_command 80 characters
{
  "status": "ok",
  "stdout": "Column Lineage: []\n",
  "stderr": "",
  "exit_code": 0
}
Generated tokens 141 tokens · stopped: STOP
The reproduction script now passes! Now I should check if this fix affects other things, such as `column_lineage`. The original issue was about table and column lineage being mixed up. Let's check if `column_lineage` still works correctly. <channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY' from sqllineage.runner import LineageRunner sql = "INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL" runner = LineageRunner(sql) print(f"Column Lineage: {runner.get_column_lineage()}") PY <|"|>}<tool_call|><|tool_response>
Turn 18at 430 s744 tokens out13,438 prompt tokens
Wait, `Column Lineage: []`.
Is that correct?
The query is `INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL`.
The column `col` is read from `foo` and written to `foo`.
So there should be a lineage from `foo.col` to `foo.col`.

Let's check why it's empty.
In `LineageRunner.get_column_lineage()` (which likely calls `SQLLineageHolder.get_column_lineage()`):
```python
    def get_column_lineage(self, exclude_subquery=True) -> Set[Tuple[Column, ...]]:
        self.graph: DiGraph  # For mypy attribute checking
        # filter all the column node in the graph
        column_nodes = [n for n in self.graph.nodes if isinstance(n, Column)]
        column_graph = self.graph.subgraph(column_nodes)
        source_columns = {column for column, deg in column_graph.in_degree if deg == 0}
        # if a column lineage path ends at SubQuery, then it should be pruned
        target_columns = {
            node
            for node, deg in column_graph.out_degree
            if isinstance(node, Column) and deg == 0
        }
        if exclude_subquery:
            target_columns = {
                node for node in target_columns if isinstance(node.parent, Table)
            }
        columns = set()
        for (source, target) in itertools.product(source_columns, target_columns):
            simple_paths = list(nx.all_simple_paths(self.graph, source, target))
            if len(simple_paths) == 1:
                columns.add(tuple(simple_paths[0]))
            # we can ignore when simple path doesn't exist, but could there be more than one simple path?
        return columns
```
If `col` is both source and target, then `col` has `in_degree > 0` and `out_degree > 0`.
So `source_columns` (where `in_degree == 0`) will be empty!
And `target_columns` (where `out_degree == 0`) will be empty!

So for a self-loop, `get_column_lineage` might naturally return an empty set unless there are other columns.

Wait, let's check if the previous version (before my fix) returned something for `column_lineage`.
(The previous version only changed `__retrieve_tag_tables`, which is NOT used in `get_column_lineage`.)
So the `Column Lineage: []` result was already there.

Let's try another query where it should return something.
`INSERT INTO foo SELECT col FROM bar`
TOOL CALL · run_command
{
  "command": "python3 - <<'PY'\nfrom sqllineage.runner import LineageRunner\nsql = \"INSERT INTO foo SELECT col FROM bar\"\nrunner = LineageRunner(sql)\nprint(f\"Source Tables: {runner.source_tables}\")\nprint(f\"Target Tables: {runner.target_tables}\")\nprint(f\"Column Lineage: {runner.get_column_lineage()}\")\nPY\n"
}
Result of run_command 212 characters
{
  "status": "ok",
  "stdout": "Source Tables: [Table: <default>.bar]\nTarget Tables: [Table: <default>.foo]\nColumn Lineage: [(Column: <default>.bar.col, Column: <default>.foo.col)]\n",
  "stderr": "",
  "exit_code": 0
}
Generated tokens 744 tokens · stopped: STOP
Wait, `Column Lineage: []`. Is that correct? The query is `INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS NOT NULL`. The column `col` is read from `foo` and written to `foo`. So there should be a lineage from `foo.col` to `foo.col`. Let's check why it's empty. In `LineageRunner.get_column_lineage()` (which likely calls `SQLLineageHolder.get_column_lineage()`): ```python def get_column_lineage(self, exclude_subquery=True) -> Set[Tuple[Column, ...]]: self.graph: DiGraph # For mypy attribute checking # filter all the column node in the graph column_nodes = [n for n in self.graph.nodes if isinstance(n, Column)] column_graph = self.graph.subgraph(column_nodes) source_columns = {column for column, deg in column_graph.in_degree if deg == 0} # if a column lineage path ends at SubQuery, then it should be pruned target_columns = { node for node, deg in column_graph.out_degree if isinstance(node, Column) and deg == 0 } if exclude_subquery: target_columns = { node for node in target_columns if isinstance(node.parent, Table) } columns = set() for (source, target) in itertools.product(source_columns, target_columns): simple_paths = list(nx.all_simple_paths(self.graph, source, target)) if len(simple_paths) == 1: columns.add(tuple(simple_paths[0])) # we can ignore when simple path doesn't exist, but could there be more than one simple path? return columns ``` If `col` is both source and target, then `col` has `in_degree > 0` and `out_degree > 0`. So `source_columns` (where `in_degree == 0`) will be empty! And `target_columns` (where `out_degree == 0`) will be empty! So for a self-loop, `get_column_lineage` might naturally return an empty set unless there are other columns. Wait, let's check if the previous version (before my fix) returned something for `column_lineage`. (The previous version only changed `__retrieve_tag_tables`, which is NOT used in `get_column_lineage`.) So the `Column Lineage: []` result was already there. Let's try another query where it should return something. `INSERT INTO foo SELECT col FROM bar` <channel|><|tool_call>call:run_command{command:<|"|>python3 - <<'PY' from sqllineage.runner import LineageRunner sql = "INSERT INTO foo SELECT col FROM bar" runner = LineageRunner(sql) print(f"Source Tables: {runner.source_tables}") print(f"Target Tables: {runner.target_tables}") print(f"Column Lineage: {runner.get_column_lineage()}") PY <|"|>}<tool_call|><|tool_response>
Turn 19at 436 s90 tokens out14,269 prompt tokens
Okay, so `column_lineage` is working.

Now let's verify with some existing tests to make sure I haven't broken anything.
I'll look for tests related to `SQLLineageHolder` or `LineageRunner`.
TOOL CALL · run_command
{
  "command": "pytest tests/core/test_holders.py -q --tb=short --no-header"
}
Result of run_command 284 characters
{
  "status": "error",
  "error_type": "CommandError",
  "error_message": "ERROR: file or directory not found: tests/core/test_holders.py\n\n",
  "details": {
    "stdout": "\nno tests ran in 0.00s\n",
    "stderr": "ERROR: file or directory not found: tests/core/test_holders.py\n\n",
    "exit_code": 4
  }
}
Generated tokens 90 tokens · stopped: STOP
Okay, so `column_lineage` is working. Now let's verify with some existing tests to make sure I haven't broken anything. I'll look for tests related to `SQLLineageHolder` or `LineageRunner`. <channel|><|tool_call>call:run_command{command:<|"|>pytest tests/core/test_holders.py -q --tb=short --no-header<|"|>}<tool_call|><|tool_response>
Turn 20at 439 s42 tokens out14,472 prompt tokens
Ah, I don't know the exact path to the tests. Let me find them.
TOOL CALL · run_command
{
  "command": "find tests -name \"*holders*\""
}
Result of run_command 174 characters
{
  "status": "ok",
  "stdout": "",
  "stderr": "",
  "exit_code": 0,
  "budget_warning": "Only 10 tool call(s) remaining (20/30 used). Finalize your edits and call submit_patch soon."
}
Generated tokens 42 tokens · stopped: STOP
Ah, I don't know the exact path to the tests. Let me find them. <channel|><|tool_call>call:run_command{command:<|"|>find tests -name "*holders*"<|"|>}<tool_call|><|tool_response>

Patch, tests and logs

Final code change Included
diff --git a/sqllineage/core/holders.py b/sqllineage/core/holders.py
index d9ce561..ebbb442 100644
--- a/sqllineage/core/holders.py
+++ b/sqllineage/core/holders.py
@@ -219,7 +219,7 @@ class SQLLineageHolder(ColumnLineageMixin):
         return {
             table
             for table, attr in self.graph.nodes(data=True)
-            if attr.get(tag) is True
+            if isinstance(table, DATASET_CLASSES) and attr.get(tag) is True
         }
 
     @staticmethod
Test output Included
============================= test session starts ==============================
collected 11 items

tests/test_insert.py ...........                                         [100%]

==================================== PASSES ====================================
- generated xml file: /tmp/rebench-grade-3a7efef8ec0d42428a601535fd4810c9.xml --
=========================== short test summary info ============================
PASSED tests/test_insert.py::test_insert_into
PASSED tests/test_insert.py::test_insert_into_with_keyword_table
PASSED tests/test_insert.py::test_insert_into_with_columns
PASSED tests/test_insert.py::test_insert_into_with_columns_and_select
PASSED tests/test_insert.py::test_insert_into_with_columns_and_select_union
PASSED tests/test_insert.py::test_insert_into_partitions
PASSED tests/test_insert.py::test_insert_overwrite
PASSED tests/test_insert.py::test_insert_overwrite_with_keyword_table
PASSED tests/test_insert.py::test_insert_overwrite_values
PASSED tests/test_insert.py::test_insert_overwrite_from_self
PASSED tests/test_insert.py::test_insert_overwrite_from_self_with_join
============================== 11 passed in 0.49s ==============================
Test errors Included
Test report (JUnit) Included
<?xml version="1.0" encoding="utf-8"?><testsuites name="pytest tests"><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="11" time="0.496" timestamp="2026-11-14T04:04:08.038803+00:00" hostname="2d0c6f98f0cb"><testcase classname="tests.test_insert" name="test_insert_into" time="0.005" /><testcase classname="tests.test_insert" name="test_insert_into_with_keyword_table" time="0.001" /><testcase classname="tests.test_insert" name="test_insert_into_with_columns" time="0.002" /><testcase classname="tests.test_insert" name="test_insert_into_with_columns_and_select" time="0.001" /><testcase classname="tests.test_insert" name="test_insert_into_with_columns_and_select_union" time="0.002" /><testcase classname="tests.test_insert" name="test_insert_into_partitions" time="0.001" /><testcase classname="tests.test_insert" name="test_insert_overwrite" time="0.001" /><testcase classname="tests.test_insert" name="test_insert_overwrite_with_keyword_table" time="0.001" /><testcase classname="tests.test_insert" name="test_insert_overwrite_values" time="0.001" /><testcase classname="tests.test_insert" name="test_insert_overwrite_from_self" time="0.001" /><testcase classname="tests.test_insert" name="test_insert_overwrite_from_self_with_join" time="0.002" /></testsuite></testsuites>
Agent log Included
  [   0.0s] 📋 System Prompt: You are a principal Python software engineer resolving a repository issue in `/workspace`.
  [   0.0s] 🎯 Task Prompt: You are evaluating a software engineering task for repository reata/sqllineage.
  [  19.1s] 💭 (738 chars) "The user is reporting an issue with `sqllineage` where table and column lineage are mixed up
for self-dependent SQL (e.g..."
  [  19.1s] 🔧 run_command (8 lines) python3 - <<'PY'
  [  19.8s]   → Source Tables: [Table: <default>.foo, Column: <default>.foo.col]
  [  27.6s] 💭 (354 chars) "The reproduction confirms the issue. `runner.source_tables` and `runner.target_tables` both 
contain `Column` objects whe..."
  [  27.6s] 📖 read_file (sqllineage/runner.py)
  [  27.7s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/runner.py', 'content': 'import logging\nfrom typing import 
Dict, List, Tuple\n\…
  [  36.8s] 💭 (370 chars) "`LineageRunner.source_tables` and `LineageRunner.target_tables` simply return 
`self._sql_holder.source_tables` and `self..."
  [  36.8s] 📖 read_file (sqllineage/runner.py)
  [  36.8s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/runner.py', 'content': '            
self._sql_holder.get_column_lineage(exclude…
  [  43.8s] 💭 (349 chars) "`_eval` does this:
```python
        self._stmt_holders = [LineageAnalyzer().analyze(stmt) for stmt in self._stmt]
     ..."
  [  43.8s] 📖 read_file (sqllineage/core/holders.py)
  [  43.8s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/holders.py', 'content': 'import itertools\nfrom typing 
import Set, Tuple, …
  [  48.6s] 💭 (75 chars) "I need to see the `SQLLineageHolder` class in `sqllineage/core/holders.py`."
  [  48.6s] 📖 read_file (sqllineage/core/holders.py)
  [  48.6s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/holders.py', 'content': '        """\n        The combined
lineage result …
  [  81.1s] 💭 (1893 chars) "Looking at `SQLLineageHolder.table_lineage_graph`:
```python
    @property
    def table_lineage_graph(self) -> DiGraph:..."
  [  81.1s] 📖 read_file (sqllineage/core/models.py)
  [  81.1s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/models.py', 'content': 'import warnings\nfrom typing 
import Dict, List, Op…
  [  83.5s] 💭 (64 chars) "I need to see the `Column` class in `sqllineage/core/models.py`."
  [  83.5s] 📖 read_file (sqllineage/core/models.py)
  [  83.5s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/models.py', 'content': 'import warnings\nfrom typing 
import Dict, List, Op…
  [  89.3s] 💭 (80 chars) "Wait, I asked for `start_line=151` but I got lines 1 to 150 again. My apologies."
  [  89.3s] 📖 read_file (sqllineage/core/models.py)
  [  89.4s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/models.py', 'content': '\n    def __eq__(self, other):\n  
return typ…
  [ 166.7s] 💭 (3934 chars) "`Column` does NOT inherit from `Table`.

So if `Column` objects are appearing in `source_tables` and `target_tables`, an..."
  [ 166.7s] 🔧 run_command grep -rn "analyze" sqllineage/core/analyzer.py
  [ 166.8s]   → 32:    def analyze(self, stmt: Statement) -> StatementLineageHolder:
  [ 168.4s] 💭 (41 chars) "Let's read `sqllineage/core/analyzer.py`."
  [ 168.4s] 📖 read_file (sqllineage/core/analyzer.py)
  [ 168.4s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/analyzer.py', 'content': 'from functools import 
reduce\nfrom operator impo…
  [ 249.7s] 💭 (224 chars) "The `Analyzer` uses handlers to populate the `holder`.
The handlers likely call `holder.add_read` and `holder.add_write`..."
  [ 249.7s] 📖 read_file (sqllineage/core/holders.py)
  [ 249.8s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/holders.py', 'content': 'import itertools\nfrom typing 
import Set, Tuple, …
  [ 255.0s] 💭 (87 chars) "Wait, I need to see the rest of `sqllineage/core/holders.py` to see `SQLLineageHolder`."
  [ 255.0s] 📖 read_file (sqllineage/core/holders.py)
  [ 255.0s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/holders.py', 'content': '        """\n        The combined
lineage result …
  [ 327.7s] 💭 (4140 chars) "Found it!

```python
    def __retrieve_tag_tables(self, tag) -> Set[Table]:
        return {
            table
        ..."
  [ 327.7s] 🔧 run_command grep -rn "__retrieve_tag_tables" sqllineage/
  [ 327.7s]   → sqllineage/core/holders.py:157:        self._selfloop_tables = 
self.__retrieve_tag_tables(NodeTag.SELFLOOP)
  [ 357.5s] 💭 (1200 chars) "It's only used in `SQLLineageHolder`.

Wait, there's one more thing.
If I filter by `DATASET_CLASSES` in `__retrieve_tag..."
  [ 357.5s] 🔧 run_command (7 lines) python3 - <<'PY'
  [ 357.7s]   → Source Tables: [Table: <default>.foo, Column: <default>.foo.col]
  [ 364.8s] 💭 (93 chars) "Confirmed. The reproduction works.

Now I will apply the fix to `sqllineage/core/holders.py`."
  [ 364.8s] ✏️ edit_file (sqllineage/core/holders.py)
  [ 365.0s]   ✓ {'status': 'ok', 'filepath': 'sqllineage/core/holders.py', 'occurrences': 1, 'strategy': 'exact', 
'diff': '--- a/sqlline…
  [ 370.1s] 💭 (55 chars) "Now I will verify the fix with the reproduction script."
  [ 370.1s] 🔧 run_command (7 lines) python3 - <<'PY'
  [ 370.3s]   → Source Tables: [Table: <default>.foo]
  [ 377.9s] 💭 (240 chars) "The reproduction script now passes!

Now I should check if this fix affects other things, such as `column_lineage`.
The ..."
  [ 377.9s] 🔧 run_command (6 lines) python3 - <<'PY'
  [ 378.1s]   → Column Lineage: []
  [ 429.0s] 💭 (2285 chars) "Wait, `Column Lineage: []`.
Is that correct?
The query is `INSERT OVERWRITE TABLE foo SELECT col FROM foo WHERE flag IS ..."
  [ 429.0s] 🔧 run_command (8 lines) python3 - <<'PY'
  [ 429.2s]   → Source Tables: [Table: <default>.bar]
  [ 435.1s] 💭 (190 chars) "Okay, so `column_lineage` is working.

Now let's verify with some existing tests to make sure I haven't broken anything...."
  [ 435.1s] 🔧 run_command pytest tests/core/test_holders.py -q --tb=short --no-header
  [ 435.4s]   → error (exit 0): 
  [ 438.6s] 💭 (63 chars) "Ah, I don't know the exact path to the tests. Let me find them."
  [ 438.6s] 🔧 run_command find tests -name "*holders*"
  [ 438.6s]   🔧 
Native result row
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  "agent_error": "Agent exceeded session timeout (7.5 min)",
  "duration_seconds": 454.74,
  "error": "Agent exceeded session timeout (7.5 min)",
  "grade": {
    "collected_tests": 11,
    "competition_junit_ok": true,
    "error": null,
    "required_issues_count": 0,
    "resolved": true,
    "status_counts": {
      "PASSED": 11
    },
    "strict_clean_patch": true,
    "test_exit_code": 0
  },
  "instance_id": "reata__sqllineage-224",
  "pass_idx": 0,
  "patch_chars": 473,
  "phase1_seconds": 453.08,
  "repo": "reata/sqllineage",
  "request_log_path": "/kaggle-root/working/r31/rollouts_X/requests/reata__sqllineage-224__p0__r1.jsonl",
  "resolved": true,
  "rollout_idx": 1,
  "run_key": "reata__sqllineage-224__p0__r1",
  "strict_clean_patch": true,
  "tool_calls": 20,
  "total_llm_calls": 20,
  "trace_path": "/kaggle-root/working/r31/rollouts_X/traces/trace_reata__sqllineage-224__p0__r1.json"
}