Stratoscale__skipper-164

{
  "status": "ok",
  "stdout": "./skipper/cli.py:117:        fqdn_image = image + ':' + tag\n",
  "stderr": "",
  "exit_code": 0
}

{
  "status": "ok",
  "filepath": "skipper/cli.py",
  "content": "    ctx.obj['workdir'] = ctx.default_map.get('workdir')\n    ctx.obj['workspace'] = ctx.default_map.get('workspace', None)\n    ctx.obj['container_context'] = ctx.default_map.get('container_context')\n    utils.set_remote_registry_login_info(registry, ctx.obj)\n\n\n@cli.command()\n@click.argument('images_to_build', nargs=-1, metavar='[IMAGE...]')\n@click.option('--container-context', help='Container context path', default=None)\n@click.option('-c', '--cache', help='Use cache image', is_flag=True, default=False, envvar='SKIPPER_USE_CACHE_IMAGE')\n@click.pass_context\ndef build(ctx, images_to_build, container_context, cache):\n    \"\"\"\n    Build a container\n    \"\"\"\n    utils.logger.debug(\"Executing build command\")\n\n    valid_images = ctx.obj.get('containers') or utils.get_images_from_dockerfiles()\n    valid_images = {image: os.path.abspath(dockerfile) for image, dockerfile in six.iteritems(valid_images)}\n    valid_images_to_build = {}\n    if not images_to_build:\n        valid_images_to_build = valid_images\n    else:\n        for image in images_to_build:\n            if image not in valid_images:\n                utils.logger.warning('Image %s is not valid for this project! Skipping...', image)\n                continue\n            valid_images_to_build[image] = valid_images[image]\n\n    tag = git.get_hash()\n    for image, dockerfile in six.iteritems(valid_images_to_build):\n        utils.logger.info('Building image: %s', image)\n\n        if not os.path.exists(dockerfile):\n            utils.logger.warning('File %s does not exist! Skipping...', dockerfile)\n            continue\n\n        fqdn_image = image + ':' + tag\n        if container_context is not None:\n            build_context = container_context\n        elif ctx.obj['container_context']:\n            build_context = ctx.obj['container_context']\n        else:\n            build_context = os.path.dirname(dockerfile)\n        command = ['build', '--network=host', '--build-arg', f'TAG={tag}',\n                   '-f', dockerfile, '-t', fqdn_image, build_context]\n        if cache:\n            cache_image = utils.generate_fqdn_image(ctx.obj['registry'], namespace=None, image=image, tag=DOCKER_TAG_FOR_CACHE)\n            runner.run(['pull', cache_image])\n            command.extend(['--cache-from', cache_image])\n        ret = runner.run(command)\n\n        if ret != 0:\n            utils.logger.error('Failed to build image: %s', image)\n            return ret\n\n        if cache:\n            cache_image = utils.generate_fqdn_image(ctx.obj['registry'], namespace=None, image=image, tag=DOCKER_TAG_FOR_CACHE)\n            runner.run(['tag', fqdn_image, cache_image])\n            runner.run(['push', cache_image])\n",
  "start_line": 80,
  "end_line": 140,
  "total_lines": 485,
  "is_truncated": false
}

{
  "status": "ok",
  "filepath": "skipper/git.py",
  "content": "import os.path\nimport logging\nimport subprocess\n\n\ndef get_hash(short=False):\n    if not os.path.exists('.git'):\n        logging.warning('*** Not working in a git repository ***')\n        return 'none'\n\n    git_command = ['git', 'rev-parse']\n    if short:\n        git_command += ['--short']\n    git_command += ['HEAD']\n\n    if uncommitted_changes():\n        logging.warning(\"*** Uncommitted changes present - Build container version might be outdated ***\")\n\n    return subprocess.check_output(git_command).strip()\n\n\ndef uncommitted_changes():\n    \"\"\"Return True is there are uncommitted changes.\"\"\"\n    return subprocess.call(['git', 'diff', '--quiet', 'HEAD']) != 0",
  "start_line": 1,
  "end_line": 24,
  "total_lines": 24,
  "is_truncated": false
}

{
  "status": "ok",
  "stdout": "Type: <class 'bytes'>, Value: b'abc12345'\n",
  "stderr": "",
  "exit_code": 0
}

{
  "status": "ok",
  "stdout": "./skipper/utils.py:186:    return str(subprocess.check_output(cmd).strip())\n./skipper/git.py:19:    return subprocess.check_output(git_command).strip()\n./tests/test_git.py:11:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:19:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:27:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_SHORT)\n./tests/test_git.py:35:    @mock.patch('subprocess.check_output')\n./tests/test_runner.py:69:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:115:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:161:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:212:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:269:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:324:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:373:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:418:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:468:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_cli.py:327:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value=''))\n./tests/test_cli.py:714:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:715:    def test_images_with_single_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:716:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"1234567\"}'\n./tests/test_cli.py:729:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:735:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:736:    def test_images_with_multiple_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:737:        subprocess_check_output_mock.side_effect = [\n./tests/test_cli.py:756:        subprocess_check_output_mock.assert_has_calls(expected_check_output_calls, any_order=True)\n./tests/test_cli.py:768:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:769:    def test_images_with_all_results(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:771:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"aaaaaaa\"}'\n./tests/test_cli.py:793:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:815:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:816:    def test_images_with_remote_results_only(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:838:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:859:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:860:    def test_images_with_missing_remote_results(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:883:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:900:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:901:    def test_images_with_local_result_and_missing_remote_results(self, subprocess_check_output_mock, requests_get_mock,\n./tests/test_cli.py:903:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"aaaaaaa\"}'\n./tests/test_cli.py:926:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:946:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:947:    def test_images_with_with_remote_error(self, subprocess_check_output_mock, requests_get_mock,\n./tests/test_cli.py:970:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:983:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:984:    def test_images_without_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:997:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:1001:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:1002:    def test_rmi_local(self, subprocess_check_output_mock):\n./tests/test_cli.py:1014:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:1071:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value='1234567\\n'))\n./tests/test_cli.py:1088:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value=''))\n./tests/test_cli.py:1115:    @mock.patch('subprocess.check_o",
  "stderr": "",
  "exit_code": 0
}

{
  "status": "ok",
  "filepath": "skipper/utils.py",
  "content": "        if is_tool(DOCKER):\n            CONTAINER_RUNTIME_COMMAND = DOCKER\n        elif is_tool(PODMAN):\n            CONTAINER_RUNTIME_COMMAND = PODMAN\n        else:\n            raise RuntimeError(f\"Nor {PODMAN} nor {DOCKER} are installed\")\n    return CONTAINER_RUNTIME_COMMAND\n\n\ndef get_extra_file(filename):\n    return pkg_resources.resource_filename(\"skipper\", f\"data/{filename}\")\n\n\ndef run_container_command(args):\n    cmd = [get_runtime_command()]\n    cmd.extend(args)\n    return str(subprocess.check_output(cmd).strip())\n\n\ndef create_path_and_add_data(full_path, data, is_file):\n    directory = os.path.dirname(full_path)\n    if not os.path.exists(directory):\n        os.makedirs(directory)\n    if is_file:\n        with open(full_path, \"w\") as _file:\n            _file.write(data)\n\n\ndef set_remote_registry_login_info(registry, ctx_object):\n    try:\n        with open('/'.join([os.path.expanduser('~'), '.docker/config.json'])) as docker_file:",
  "start_line": 170,
  "end_line": 200,
  "total_lines": 210,
  "is_truncated": false
}

{
  "status": "ok",
  "filepath": "tests/test_git.py",
  "content": "import unittest\nimport mock\nfrom skipper import git\n\n\nGIT_HASH_FULL = '00efe974e3cf18c3493f110f5aeda04ff78b125f'\nGIT_HASH_SHORT = '00efe97'\n\n\nclass TestGit(unittest.TestCase):\n    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n    @mock.patch('os.path.exists', return_value=True)\n    def test_get_hash_with_default_argument(self, exists_mock, check_output_mock):\n        git_hash = git.get_hash()\n        exists_mock.assert_called_once_with('.git')\n        check_output_mock.assert_called_once_with(['git', 'rev-parse', 'HEAD'])\n        self.assertEqual(git_hash, GIT_HASH_FULL)\n\n    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n    @mock.patch('os.path.exists', return_value=True)\n    def test_get_full_hash(self, exists_mock, check_output_mock):\n        git_hash = git.get_hash(short=False)\n        exists_mock.assert_called_once_with('.git')\n        check_output_mock.assert_called_once_with(['git', 'rev-parse', 'HEAD'])\n        self.assertEqual(git_hash, GIT_HASH_FULL)\n\n    @mock.patch('subprocess.check_output', return_value=GIT_HASH_SHORT)\n    @mock.patch('os.path.exists', return_value=True)\n    def test_get_short_hash(self, exists_mock, check_output_mock):\n        git_hash = git.get_hash(short=True)\n        exists_mock.assert_called_once_with('.git')\n        check_output_mock.assert_called_once_with(['git', 'rev-parse', '--short', 'HEAD'])\n        self.assertEqual(git_hash, GIT_HASH_SHORT)\n\n    @mock.patch('subprocess.check_output')\n    @mock.patch('os.path.exists', return_value=False)\n    def test_not_in_git_project(self, exists_mock, check_output_mock):\n        git_hash = git.get_hash()\n        exists_mock.assert_called_once_with('.git')\n        check_output_mock.assert_not_called()\n        self.assertEqual(git_hash, 'none')",
  "start_line": 1,
  "end_line": 41,
  "total_lines": 41,
  "is_truncated": false
}

{
  "status": "ok",
  "stdout": "",
  "stderr": "",
  "exit_code": 0
}

{
  "status": "ok",
  "stdout": "Bytes case: abc12345\nString case: abc12345\n",
  "stderr": "",
  "exit_code": 0
}

{
  "status": "ok",
  "stdout": "./skipper/runner.py:6:import subprocess\n./skipper/runner.py:38:    proc = (subprocess.Popen(cmd)\n./skipper/runner.py:40:            subprocess.Popen(cmd, stdout=sys.stderr))\n./skipper/utils.py:6:import subprocess\n./skipper/utils.py:186:    return str(subprocess.check_output(cmd).strip())\n./skipper/config.py:5:from subprocess import check_output\n./skipper/git.py:3:import subprocess\n./skipper/git.py:19:    return subprocess.check_output(git_command).strip()\n./skipper/git.py:24:    return subprocess.call(['git', 'diff', '--quiet', 'HEAD']) != 0\n./tests/test_git.py:11:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:19:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:27:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_SHORT)\n./tests/test_git.py:35:    @mock.patch('subprocess.check_output')\n./tests/test_runner.py:46:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:54:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:68:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:69:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:114:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:115:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:160:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:161:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:211:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:212:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:268:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:269:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:323:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:324:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:372:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:373:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:417:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:418:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:467:    @mock.patch('subprocess.Popen', autospec=False)\n./tests/test_runner.py:468:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_cli.py:327:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value=''))\n./tests/test_cli.py:714:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:715:    def test_images_with_single_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:716:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"1234567\"}'\n./tests/test_cli.py:729:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:735:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:736:    def test_images_with_multiple_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:737:        subprocess_check_output_mock.side_effect = [\n./tests/test_cli.py:756:        subprocess_check_output_mock.assert_has_calls(expected_check_output_calls, any_order=True)\n./tests/test_cli.py:768:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:769:    def test_images_with_all_results(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:771:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"aaaaaaa\"}'\n./tests/test_cli.py:793:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:815:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:816:    def test_images_with_remote_results_only(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:838:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:859:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:860:    def test_images_with_missing_remote_results(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:883:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:900:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:901:    def test_images_with_local_result_and_missing_remote_results(self, subprocess_check_output_mock, requests_get_mock,\n./tests/test_cli.py:903:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"aaaaaaa\"}'\n./tests/test_cli.py:926:        subprocess_check_output_mo",
  "stderr": "",
  "exit_code": 0
}

{
  "status": "ok",
  "filepath": "skipper/config.py",
  "content": "import os\nfrom collections import defaultdict\nfrom re import findall\nfrom string import Template\nfrom subprocess import check_output\n\nimport six\nimport yaml\n\n\ndef load_defaults():\n    skipper_conf = os.environ.get('SKIPPER_CONF', 'skipper.yaml')\n\n    defaults = {}\n    if os.path.exists(skipper_conf):\n        with open(skipper_conf) as confile:\n            config = yaml.safe_load(confile)\n            containers = config.pop('containers', None)\n        _normalize_config(config, defaults)\n        if containers is not None:\n            defaults['containers'] = containers\n    return defaults\n\n\ndef _normalize_config(config, normalized_config):\n    for key, value in six.iteritems(config):\n        if isinstance(value, dict):\n            normalized_config[key] = {}\n            _normalize_config(value, normalized_config[key])\n        elif isinstance(value, list):\n            normalized_config[key] = [_interpolate_env_vars(x) for x in value]\n        else:\n            normalized_key = key.replace('-', '_')\n            normalized_config[normalized_key] = _interpolate_env_vars(value)\n\n\ndef _interpolate_env_vars(key):\n    for match in findall(r'\\$\\(.+\\)', key):\n        output = check_output(\"echo \" + match, shell=True).strip().decode(\"utf-8\")\n        if not output:\n            raise ValueError(match)\n        key = key.replace(match, output)\n    return Template(key).substitute(defaultdict(lambda: \"\", os.environ))",
  "start_line": 1,
  "end_line": 43,
  "total_lines": 43,
  "is_truncated": false
}

{
  "status": "error",
  "error_type": "CommandError",
  "error_message": "",
  "details": {
    "stdout": "",
    "stderr": "",
    "exit_code": 1
  }
}

{
  "status": "ok",
  "filepath": "skipper/runner.py",
  "content": "# pylint: disable=consider-using-with\nimport getpass\nimport grp\nimport logging\nimport os\nimport subprocess\nfrom contextlib import contextmanager\nimport sys\nfrom retry import retry\nfrom skipper import utils\n\n\ndef get_default_net():\n    # The host networking driver only works on Linux hosts, and is not supported on Docker Desktop for Mac,\n    # Docker Desktop for Windows, or Docker EE for Windows Server.\n    return 'host' if sys.platform not in ('darwin', 'win32') else 'bridge'\n\n\n# pylint: disable=too-many-arguments\ndef run(command, fqdn_image=None, environment=None, interactive=False, name=None, net=None, publish=(), volumes=None,\n        workdir=None, use_cache=False, workspace=None, env_file=(), stdout_to_stderr=False):\n\n    if not net:\n        net = get_default_net()\n\n    if fqdn_image is not None:\n        return _run_nested(fqdn_image, environment, command, interactive, name, net, publish, volumes,\n                           workdir, use_cache, workspace, env_file)\n\n    return _run(command, stdout_to_stderr=stdout_to_stderr)\n\n\ndef _run(cmd_args, stdout_to_stderr=False):\n    logger = logging.getLogger('skipper')\n    cmd = [utils.get_runtime_command()]\n    cmd.extend(cmd_args)\n    logger.debug(' '.join(cmd))\n    proc = (subprocess.Popen(cmd)\n            if not stdout_to_stderr else\n            subprocess.Popen(cmd, stdout=sys.stderr))\n    proc.wait()\n    return proc.returncode\n\n\n# pylint: disable=too-many-locals\n# pylint: disable=too-many-arguments\ndef _run_nested(fqdn_image, environment, command, interactive, name, net, publish, volumes, workdir, use_cache, workspace, env_file):\n    cwd = os.getcwd()\n    if workspace is None:\n        workspace = os.path.dirname(cwd)\n    homedir = os.path.expanduser('~')\n    cmd = ['run']\n    if interactive:\n        cmd += ['-i']\n        cmd += ['-e', 'SKIPPER_INTERACTIVE=True']\n    if name:\n        cmd += ['--name', name]\n\n    cmd += ['-t']\n\n    if os.environ.get(\"KEEP_CONTAINERS\", False):\n        cmd += ['-e', 'KEEP_CONTAINERS=True']\n    else:\n        cmd += ['--rm']\n\n    for cmd_limit in utils.SKIPPER_ULIMIT:\n        cmd += cmd_limit\n\n    cmd += ['--privileged']\n\n    cmd = handle_networking(cmd, publish, net)\n\n    for _file in env_file:\n        cmd += ['--env-file', _file]\n\n    environment = environment or []\n    for env in environment:\n        cmd += ['-e', env]\n\n    user = getpass.getuser()\n    user_id = os.getuid()\n    cmd += ['-e', f'SKIPPER_USERNAME={user}']\n    cmd += ['-e', f'SKIPPER_UID={user_id}']\n    cmd += ['-e', f'HOME={homedir}']\n    cmd += ['-e', f'CONTAINER_RUNTIME_COMMAND={utils.get_runtime_command()}']\n\n    if utils.get_runtime_command() == \"docker\":\n        try:\n            docker_gid = grp.getgrnam('docker').gr_gid\n            cmd += ['-e', f'SKIPPER_DOCKER_GID={docker_gid}']\n        except KeyError:\n            pass\n\n    if utils.get_runtime_command() == \"podman\":\n        cmd += ['--group-add', 'keep-groups']\n\n    if use_cache:\n        cmd += ['-e', 'SKIPPER_USE_CACHE_IMAGE=True']\n\n    cmd = handle_volumes_bind_mount(cmd, homedir, volumes, workspace)\n\n    cmd = handle_workdir(cmd, cwd, workdir)\n\n    cmd += ['--entrypoint', '/opt/skipper/skipper-entrypoint.sh']\n    cmd += [fqdn_image]\n    cmd += [' '.join(command)]\n\n    with _network(net):\n        ret = _run(cmd)\n\n    return ret\n\n\ndef handle_workdir(cmd, cwd, workdir):\n    if workdir:\n        cmd += ['-w', workdir]\n    else:\n        cmd += ['-w', cwd]\n    return cmd\n\n\ndef handle_networking(cmd, publish, net):\n    if publish:\n        for port_mapping in publish:\n            cmd += ['-p', port_mapping]\n\n    if net is not None:\n        cmd += ['--net', net]\n\n    return cmd\n\n\ndef handle_volumes_bind_mount(docker_cmd, homedir, volumes, workspace):\n    volumes = volumes or []\n    volumes.extend([f'{homedir}/.netrc:{homedir}/.netrc:ro',\n                    f'{homedir}/.gitconfig:{homedir}/.gitconfig:ro',\n                    f'{homedir}/.docker/config.json:{homedir}/.docker/config.json:ro'])\n\n    # required for docker login (certificates)\n    if os.path.exists('/etc/docker'):\n        volumes.append('/etc/docker:/etc/docker:ro')\n\n    if utils.get_runtime_command() == utils.PODMAN:\n        volumes.extend([\n            f'{workspace}:{workspace}:rw',\n            f'{utils.get_extra_file(\"skipper-entrypoint.sh\")}:/opt/skipper/skipper-entrypoint.sh:rw',\n        ])\n        if os.path.exists('/var/run/docker.sock'):\n            volumes.append('/var/run/docker.sock:/var/run/docker.sock:rw')\n        if os.path.exists('/var/lib/osmosis'):",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 238,
  "is_truncated": true
}

{
  "status": "ok",
  "filepath": "skipper/git.py",
  "occurrences": 1,
  "strategy": "exact",
  "diff": "--- a/skipper/git.py\n+++ b/skipper/git.py\n@@ -16,7 +16,8 @@\n     if uncommitted_changes():\n         logging.warning(\"*** Uncommitted changes present - Build container version might be outdated ***\")\n \n-    return subprocess.check_output(git_command).strip()\n+    res = subprocess.check_output(git_command)\n+    return res.decode('utf-8').strip() if isinstance(res, bytes) else res.strip()\n \n \n def uncommitted_changes():\n",
  "is_truncated": false
}

{
  "status": "error",
  "error_type": "FileEditError",
  "error_message": "Failed to replace: old_string not found. Ensure you're not escaping content incorrectly and check whitespace, indentation, and context."
}

{
  "status": "ok",
  "filepath": "skipper/utils.py",
  "content": "import base64\nimport glob\nimport json\nimport logging\nimport os\nimport subprocess\nfrom shutil import which\nfrom six.moves import http_client\nimport requests\nfrom requests_bearer import HttpBearerAuth\nimport urllib3\nimport pkg_resources\n\n\nREGISTRY_BASE_URL = 'https://%(registry)s/v2/'\nIMAGE_TAGS_URL = REGISTRY_BASE_URL + '%(image)s/tags/list'\nMANIFEST_URL = REGISTRY_BASE_URL + '%(image)s/manifests/%(reference)s'\nDOCKER = \"docker\"\nPODMAN = \"podman\"\n\nlogger = None   # pylint: disable=invalid-name\n\nCONTAINER_RUNTIME_COMMAND = os.getenv(\"CONTAINER_RUNTIME_COMMAND\")\n\nSKIPPER_ULIMIT = [['--ulimit', limit] for limit in os.environ.get('SKIPPER_ULIMITS', 'nofile=65536:65536').split(',')]\n\n\ndef configure_logging(name, level):\n    global logger   # pylint: disable=global-statement,invalid-name\n    logger = logging.getLogger(name)\n\n    formatter = logging.Formatter('[%(name)s] %(message)s')\n\n    console_handler = logging.StreamHandler()\n    console_handler.setLevel(level)\n    console_handler.setFormatter(formatter)\n\n    logger.setLevel(level)\n    logger.addHandler(console_handler)\n\n\ndef get_images_from_dockerfiles():\n    dockerfiles = glob.glob(image_to_dockerfile('*'))\n    images = {dockerfile_to_image(dockerfile): dockerfile for dockerfile in dockerfiles}\n    return images\n\n\ndef local_image_exist(image, tag):\n    name = image + ':' + tag\n    command = [\n        'images',\n        '--format', '{{.ID}}',\n        name\n    ]\n    output = run_container_command(command)\n    return output != ''\n\n\ndef remote_image_exist(registry, image, tag, username, password):\n    urllib3.disable_warnings()\n    url = IMAGE_TAGS_URL % {\"registry\": registry, \"image\": image}\n    headers = {\"Accept\": \"application/vnd.docker.distribution.manifest.v2+json\"}\n    response = requests.get(url=url, verify=False, headers=headers, auth=HttpBearerAuth(username, password))\n\n    if response.status_code != http_client.OK:\n        return False\n\n    info = response.json()\n    return tag in info['tags']\n\n\ndef get_local_images_info(images):\n    command = [\n        'images',\n        '--format', '{\"name\": \"{{.Repository}}\", \"tag\": \"{{.Tag}}\"}',\n    ]\n    images_info = []\n    for image in images:\n        output = run_container_command(command + [image])\n        if output == '':\n            continue\n        image_info = [json.loads(record) for record in output.splitlines()]\n        images_info += [['none', info['name'], info['tag']] for info in image_info]\n\n    return images_info\n\n\ndef get_remote_images_info(images, registry, username, password):\n    images_info = []\n    for image in images:\n        images_info += get_remote_image_info(image, registry, username, password)\n    return images_info\n\n\ndef get_remote_image_info(image, registry, username, password):\n    urllib3.disable_warnings()\n    image_info = []\n    url = IMAGE_TAGS_URL % {\"registry\": registry, \"image\": image}\n    response = requests.get(url=url, verify=False, auth=HttpBearerAuth(username, password))\n    info = response.json()\n    if response.ok:\n        if info['tags']:\n            image_info += [[registry, image, tag] for tag in info['tags']]\n    else:\n        if info['errors'][0]['code'] in ['NAME_UNKNOWN', 'NOT_FOUND']:\n            pass\n        else:\n            raise RuntimeError(info)\n\n    return image_info\n\n\ndef get_image_digest(registry, image, tag, username, password):\n    urllib3.disable_warnings()\n    url = MANIFEST_URL % {\"registry\": registry, \"image\": image, \"reference\": tag}\n    headers = {\"Accept\": \"application/vnd.docker.distribution.manifest.v2+json\"}\n    response = requests.get(url=url, headers=headers, verify=False, auth=HttpBearerAuth(username, password))\n    return response.headers['Docker-Content-Digest']\n\n\ndef delete_image_from_registry(registry, image, tag, username, password):\n    digest = get_image_digest(registry, image, tag, username, password)\n    url = MANIFEST_URL % {\"registry\": registry, \"image\": image, \"reference\": digest}\n    response = requests.delete(url=url, verify=False, auth=HttpBearerAuth(username, password))\n    response.raise_for_status()\n\n\ndef delete_local_image(image, tag):\n    name = image + ':' + tag\n    run_container_command(['rmi', name])\n\n\ndef generate_fqdn_image(registry, namespace, image, tag='latest'):\n    fqdn_image = image\n    if namespace is not None:\n        fqdn_image = namespace + '/' + fqdn_image\n    if registry is not None:\n        fqdn_image = registry + '/' + fqdn_image\n    if tag is not None:\n        fqdn_image = fqdn_image + ':' + tag\n    return fqdn_image\n\n\ndef image_to_dockerfile(image):\n    prefixes = ['Docker', 'Container']\n    docker_files = [file for file in [prefix + \"file.\" + image for prefix in prefixes] if os.path.exists(file)]\n    if len(docker_files) > 1:\n        logger.warning('Found more than one dockerfile for %s. Using %s', image, docker_files[0])\n    return docker_files[0] if len(docker_files) else None\n",
  "start_line": 1,
  "end_line": 150,
  "total_lines": 210,
  "is_truncated": true
}

{
  "status": "ok",
  "filepath": "skipper/utils.py",
  "content": "\ndef dockerfile_to_image(dockerfile):\n    return dockerfile.split('.', 1)[-1]\n\n\ndef is_tool(name):\n    \"\"\"Check whether `name` is on PATH and marked as executable.\"\"\"\n    full_path = which(name)\n    if full_path is None:\n        return False\n    if not os.path.islink(full_path):\n        return True\n    actual_path = os.readlink(full_path)\n    return os.path.basename(actual_path) == name\n\n\ndef get_runtime_command():\n    global CONTAINER_RUNTIME_COMMAND  # pylint: disable=global-statement\n    if not CONTAINER_RUNTIME_COMMAND:\n        if is_tool(DOCKER):\n            CONTAINER_RUNTIME_COMMAND = DOCKER\n        elif is_tool(PODMAN):\n            CONTAINER_RUNTIME_COMMAND = PODMAN\n        else:\n            raise RuntimeError(f\"Nor {PODMAN} nor {DOCKER} are installed\")\n    return CONTAINER_RUNTIME_COMMAND\n\n\ndef get_extra_file(filename):\n    return pkg_resources.resource_filename(\"skipper\", f\"data/{filename}\")\n\n\ndef run_container_command(args):\n    cmd = [get_runtime_command()]\n    cmd.extend(args)\n    return str(subprocess.check_output(cmd).strip())\n\n\ndef create_path_and_add_data(full_path, data, is_file):\n    directory = os.path.dirname(full_path)\n    if not os.path.exists(directory):\n        os.makedirs(directory)\n    if is_file:\n        with open(full_path, \"w\") as _file:\n            _file.write(data)\n\n\ndef set_remote_registry_login_info(registry, ctx_object):\n    try:\n        with open('/'.join([os.path.expanduser('~'), '.docker/config.json'])) as docker_file:\n            docker_config = json.load(docker_file)\n\n        auth = docker_config.get('auths', {}).get(registry, {}).get('auth')\n        if auth:\n            username, password = base64.b64decode(auth).decode().split(r':')\n            ctx_object['username'] = username\n            ctx_object['password'] = password\n    except Exception:  # pylint: disable=broad-except\n        #  Ignore failure and just continue\n        pass",
  "start_line": 151,
  "end_line": 210,
  "total_lines": 210,
  "is_truncated": false
}

{
  "status": "ok",
  "filepath": "skipper/utils.py",
  "occurrences": 1,
  "strategy": "exact",
  "diff": "--- a/skipper/utils.py\n+++ b/skipper/utils.py\n@@ -183,7 +183,8 @@\n def run_container_command(args):\n     cmd = [get_runtime_command()]\n     cmd.extend(args)\n-    return str(subprocess.check_output(cmd).strip())\n+    res = subprocess.check_output(cmd)\n+    return res.decode('utf-8').strip() if isinstance(res, bytes) else res.strip()\n \n \n def create_path_and_add_data(full_path, data, is_file):\n",
  "is_truncated": false
}

{
  "status": "ok",
  "stdout": "./skipper/utils.py:186:    res = subprocess.check_output(cmd)\n./skipper/git.py:19:    res = subprocess.check_output(git_command)\n./tests/test_git.py:11:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:19:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:27:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_SHORT)\n./tests/test_git.py:35:    @mock.patch('subprocess.check_output')\n./tests/test_runner.py:69:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:115:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:161:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:212:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:269:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:324:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:373:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:418:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:468:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_cli.py:327:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value=''))\n./tests/test_cli.py:714:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:715:    def test_images_with_single_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:716:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"1234567\"}'\n./tests/test_cli.py:729:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:735:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:736:    def test_images_with_multiple_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:737:        subprocess_check_output_mock.side_effect = [\n./tests/test_cli.py:756:        subprocess_check_output_mock.assert_has_calls(expected_check_output_calls, any_order=True)\n./tests/test_cli.py:768:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:769:    def test_images_with_all_results(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:771:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"aaaaaaa\"}'\n./tests/test_cli.py:793:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:815:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:816:    def test_images_with_remote_results_only(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:838:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:859:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:860:    def test_images_with_missing_remote_results(self, subprocess_check_output_mock, requests_get_mock, tabulate_mock,\n./tests/test_cli.py:883:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:900:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:901:    def test_images_with_local_result_and_missing_remote_results(self, subprocess_check_output_mock, requests_get_mock,\n./tests/test_cli.py:903:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"aaaaaaa\"}'\n./tests/test_cli.py:926:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:946:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:947:    def test_images_with_with_remote_error(self, subprocess_check_output_mock, requests_get_mock,\n./tests/test_cli.py:970:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:983:    @mock.patch('subprocess.check_output', autospec=True, return_value='')\n./tests/test_cli.py:984:    def test_images_without_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:997:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:1001:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:1002:    def test_rmi_local(self, subprocess_check_output_mock):\n./tests/test_cli.py:1014:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:1071:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value='1234567\\n'))\n./tests/test_cli.py:1088:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value=''))\n./tests/test_cli.py:1115:    @mock.patch('subprocess.check_output', mock.MagicMock(",
  "stderr": "",
  "exit_code": 0
}

{
  "status": "ok",
  "stdout": "./skipper/utils.py:186:    res = subprocess.check_output(cmd)\n./skipper/config.py:5:from subprocess import check_output\n./skipper/config.py:39:        output = check_output(\"echo \" + match, shell=True).strip().decode(\"utf-8\")\n./skipper/git.py:19:    res = subprocess.check_output(git_command)\n./tests/test_git.py:11:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:13:    def test_get_hash_with_default_argument(self, exists_mock, check_output_mock):\n./tests/test_git.py:16:        check_output_mock.assert_called_once_with(['git', 'rev-parse', 'HEAD'])\n./tests/test_git.py:19:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_FULL)\n./tests/test_git.py:21:    def test_get_full_hash(self, exists_mock, check_output_mock):\n./tests/test_git.py:24:        check_output_mock.assert_called_once_with(['git', 'rev-parse', 'HEAD'])\n./tests/test_git.py:27:    @mock.patch('subprocess.check_output', return_value=GIT_HASH_SHORT)\n./tests/test_git.py:29:    def test_get_short_hash(self, exists_mock, check_output_mock):\n./tests/test_git.py:32:        check_output_mock.assert_called_once_with(['git', 'rev-parse', '--short', 'HEAD'])\n./tests/test_git.py:35:    @mock.patch('subprocess.check_output')\n./tests/test_git.py:37:    def test_not_in_git_project(self, exists_mock, check_output_mock):\n./tests/test_git.py:40:        check_output_mock.assert_not_called()\n./tests/test_runner.py:69:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:71:    def test_run_simple_command_nested_network_exist(self, resource_filename_mock, check_output_mock,\n./tests/test_runner.py:74:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_runner.py:115:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:118:                                                         check_output_mock, popen_mock, grp_getgrnam_mock, os_getuid_mock):\n./tests/test_runner.py:120:        check_output_mock.side_effect = [self.NET_NOT_EXISTS, 'new-net-hash', '']\n./tests/test_runner.py:161:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:163:    def test_run_simple_command_nested_with_env(self, resource_filename_mock, check_output_mock, popen_mock, grp_getgrnam_mock, os_getuid_mock):\n./tests/test_runner.py:165:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_runner.py:212:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:215:            self, resource_filename_mock, check_output_mock, popen_mock,\n./tests/test_runner.py:219:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_runner.py:269:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:272:            self, resource_filename_mock, check_output_mock, popen_mock,\n./tests/test_runner.py:276:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_runner.py:324:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:327:                                                   check_output_mock, popen_mock, grp_getgrnam_mock, os_getuid_mock):\n./tests/test_runner.py:329:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_runner.py:373:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:375:    def test_run_complex_command_nested(self, resource_filename_mock, check_output_mock, popen_mock, grp_getgrnam_mock, os_getuid_mock):\n./tests/test_runner.py:377:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_runner.py:418:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:420:    def test_run_complex_command_nested_with_env(self, resource_filename_mock, check_output_mock, popen_mock, grp_getgrnam_mock, os_getuid_mock):\n./tests/test_runner.py:422:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_runner.py:468:    @mock.patch('subprocess.check_output', autospec=False)\n./tests/test_runner.py:470:    def test_run_complex_command_nested_with_special_case_verification(self, resource_filename_mock, check_output_mock,\n./tests/test_runner.py:476:        check_output_mock.side_effect = [self.NET_LS, '']\n./tests/test_cli.py:327:    @mock.patch('subprocess.check_output', mock.MagicMock(autospec=True, return_value=''))\n./tests/test_cli.py:714:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:715:    def test_images_with_single_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./tests/test_cli.py:716:        subprocess_check_output_mock.return_value = '{\"name\": \"my_image\", \"tag\": \"1234567\"}'\n./tests/test_cli.py:729:        subprocess_check_output_mock.assert_called_once_with(expected_command)\n./tests/test_cli.py:735:    @mock.patch('subprocess.check_output', autospec=True)\n./tests/test_cli.py:736:    def test_images_with_multiple_local_results(self, subprocess_check_output_mock, tabulate_mock):\n./te",
  "stderr": "",
  "exit_code": 0,
  "budget_warning": "Only 10 tool call(s) remaining (20/30 used). Finalize your edits and call submit_patch soon."
}

{
  "status": "ok",
  "stdout": "......                                                                   [100%]\n=============================== warnings summary ===============================\n../usr/local/lib/python3.10/site-packages/requests_bearer/requests_bearer.py:19\n  /usr/local/lib/python3.10/site-packages/requests_bearer/requests_bearer.py:19: DeprecationWarning: invalid escape sequence '\\w'\n    params = dict(re.findall('(\\w+)=\"([^\"]+)\",?', response.headers['WWW-Authenticate'][7:]))\n\nskipper/utils.py:12\n  /workspace/skipper/utils.py:12: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n    import pkg_resources\n\ntests/test_utils.py::TestUtils::test_get_runtime_command\n  /workspace/tests/test_utils.py:16: DeprecationWarning: Please use assertEqual instead.\n    self.assertEquals(res, utils.DOCKER)\n\ntests/test_utils.py::TestUtils::test_get_runtime_command\n  /workspace/tests/test_utils.py:20: DeprecationWarning: Please use assertEqual instead.\n    self.assertEquals(res, utils.PODMAN)\n\ntests/test_utils.py::TestUtils::test_get_runtime_command\n  /workspace/tests/test_utils.py:27: DeprecationWarning: Please use assertEqual instead.\n    self.assertEquals(res, utils.DOCKER)\n\n-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html\n6 passed, 5 warnings in 0.21s\n",
  "stderr": "",
  "exit_code": 0,
  "budget_warning": "Only 9 tool call(s) remaining (21/30 used). Finalize your edits and call submit_patch soon."
}

{
  "status": "ok",
  "stdout": "........................................................................ [ 82%]\n...............                                                          [100%]\n=============================== warnings summary ===============================\nskipper/utils.py:12\n  /workspace/skipper/utils.py:12: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.\n    import pkg_resources\n\n../usr/local/lib/python3.10/site-packages/click/core.py:1219\n  /usr/local/lib/python3.10/site-packages/click/core.py:1219: DeprecationWarning: invalid escape sequence '\\s'\n    \"\"\"A parameter to a command comes in two versions: they are either\n\n../usr/local/lib/python3.10/site-packages/click/_compat.py:14\n  /usr/local/lib/python3.10/site-packages/click/_compat.py:14: DeprecationWarning: invalid escape sequence '\\['\n    _ansi_re = re.compile('\\033\\[((?:\\d|;)*)([a-zA-Z])')\n\n../usr/local/lib/python3.10/site-packages/click/decorators.py:93\n  /usr/local/lib/python3.10/site-packages/click/decorators.py:93: DeprecationWarning: invalid escape sequence '\\s'\n    \"\"\"Creates a new :class:`Command` and uses the decorated function as\n\n-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html\n87 passed, 4 warnings in 0.47s\n",
  "stderr": "",
  "exit_code": 0,
  "budget_warning": "Only 8 tool call(s) remaining (22/30 used). Finalize your edits and call submit_patch soon."
}

{
  "status": "ok",
  "stdout": " M skipper/git.py\n M skipper/utils.py\ndiff --git a/skipper/git.py b/skipper/git.py\nindex daa02c6..46509f9 100644\n--- a/skipper/git.py\n+++ b/skipper/git.py\n@@ -16,7 +16,8 @@ def get_hash(short=False):\n     if uncommitted_changes():\n         logging.warning(\"*** Uncommitted changes present - Build container version might be outdated ***\")\n \n-    return subprocess.check_output(git_command).strip()\n+    res = subprocess.check_output(git_command)\n+    return res.decode('utf-8').strip() if isinstance(res, bytes) else res.strip()\n \n \n def uncommitted_changes():\ndiff --git a/skipper/utils.py b/skipper/utils.py\nindex dc0bbcf..c88b4a3 100644\n--- a/skipper/utils.py\n+++ b/skipper/utils.py\n@@ -183,7 +183,8 @@ def get_extra_file(filename):\n def run_container_command(args):\n     cmd = [get_runtime_command()]\n     cmd.extend(args)\n-    return str(subprocess.check_output(cmd).strip())\n+    res = subprocess.check_output(cmd)\n+    return res.decode('utf-8').strip() if isinstance(res, bytes) else res.strip()\n \n \n def create_path_and_add_data(full_path, data, is_file):\n",
  "stderr": "",
  "exit_code": 0,
  "budget_warning": "Only 7 tool call(s) remaining (23/30 used). Finalize your edits and call submit_patch soon."
}

{
  "status": "error",
  "error_type": "CommandError",
  "error_message": "ls: cannot access 'tests/test_config.py': No such file or directory\n",
  "details": {
    "stdout": "",
    "stderr": "ls: cannot access 'tests/test_config.py': No such file or directory\n",
    "exit_code": 2
  },
  "budget_warning": "Only 6 tool call(s) remaining (24/30 used). Finalize your edits and call submit_patch soon."
}

{
  "status": "error",
  "error_type": "CommandError",
  "error_message": "",
  "details": {
    "stdout": "",
    "stderr": "",
    "exit_code": 1
  },
  "budget_warning": "Only 5 tool call(s) remaining (25/30 used). Finalize your edits and call submit_patch soon."
}

{
  "status": "ok",
  "patch_size": 1027,
  "files_changed": 2
}